Clone AT18705 Report

Search the DGRC for AT18705

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:187
Well:5
Vector:pOTB7
Associated Gene/TranscriptCG12470-RA
Protein status:AT18705.pep: gold
Sequenced Size:1100

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12470 2003-01-01 Sim4 clustering to Release 3
CG12470 2004-07-13 Blastp of sequenced clone
CG12470 2008-04-29 Release 5.5 accounting
CG12470 2008-08-15 Release 5.9 accounting
CG12470 2008-12-18 5.12 accounting

Clone Sequence Records

AT18705.complete Sequence

1100 bp (1100 high quality bases) assembled on 2004-07-13

GenBank Submission: BT015302

> AT18705.complete
CTTGGCTATCACCAGCCATATGGCAAAACATCAGAAGTAAAATTGTCTGT
GAACACACAAAGCACACGAAAAAATCTCGGAAAAAAAACTGTACAAAATT
TAACTTCGCTCTCGACCAGATTTACAAAATTTTTTTTTGGCCAAACTTAA
AATTAGGAATACAAGAGAACGGTGTGTGTACCAAAATCAAATCGTGTTTA
GCTAGTTGACGTCAGGATATATGCTACTTTGATTCGTTAACTATTTTCAA
GTGATCGGAAGCAAACGCAGAGGCATTTCTAATTTGTGCGTTGCGCGACT
TTCAGAGATCGTAGACTCGATTAACCATGGGTAAAAAGGGCAAAGGAAAG
AAGGGCAAGAAGCCCGCCGCAGTTGTGGCTCCCATCGAAGCGCCACCATG
TCCTCCGTGTCCGGAACCACCAAAGCAGATGCAACCACTTGACGCTTGTC
CAGAGTCTAGCGGACCCCACGATGTCCTTCGGGCTCAACCGAATCATTAC
CCGGCTCTTCTTCGTATTCCGGAAACAATGGCGGTGGTGGGCTCTGAGAA
TGGATGCTACGATAGCATTTGCAAGCTCCTGAGAGCCGGATTCCGGTGTG
CCGAGCGGGTTTTCGTGATGGCCCCTTGGGGCAACTACGTGGTTTTCCGG
TATCACAACAATAATGACTTTATTTACTTCCTGTTTGATGGATGCACCTG
CGATGTTAATAGGTTCCGCTATCTAGACCTCAGCTGCGGAACTGCTGGAT
TTCTTTTCTTCGATAATATGCACGACGTTATTAGTTATATTATCCAGTCT
CGAAAGACGCGTCTATATCTGGAGAATCTAAACAAGATTGCCATTGATCA
GATTGTGGAGGAGTATGGCGCTGTAACGTACACCCAAAAGGCAAAATGCA
TGCGATTCGCTTAAATAGGTCCCATATGATTTCTAACAAAAGAGGGCAAC
GCATACACAACGAGGATAATACTGGACGACAAGCTTTGCTCTAAACATTT
AACATATTTTGGCACAATCTTTATCAATAAATAATAATCTCTTTGAAAGC
AACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT18705.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-RA 1249 CG12470-RA 43..1105 1..1062 5260 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 202091..202937 208..1054 4235 100 Plus
chrX 22417052 chrX 201686..201894 1..208 995 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 308089..308943 208..1062 4260 99.9 Plus
X 23542271 X 307684..307892 1..208 995 99.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 316187..317041 208..1062 4260 99.8 Plus
X 23527363 X 315782..315990 1..208 1005 99.5 Plus
Blast to na_te.dros performed on 2019-03-16 15:47:49 has no hits.

AT18705.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:48:56 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 201686..201894 1..208 99 -> Plus
chrX 202092..202937 209..1054 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:12:50 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..588 327..914 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:34 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..588 327..914 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:54:25 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..588 327..914 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:25 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..588 327..914 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:54:12 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..588 327..914 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:42:19 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..1055 1..1054 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:34 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..1055 1..1054 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:54:25 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..1055 1..1054 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:25 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..1055 1..1054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:54:12 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
CG12470-RA 1..1055 1..1054 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:56 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
X 307684..307892 1..208 99 -> Plus
X 308090..308935 209..1054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:56 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
X 307684..307892 1..208 99 -> Plus
X 308090..308935 209..1054 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:48:56 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
X 307684..307892 1..208 99 -> Plus
X 308090..308935 209..1054 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:54:25 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 201717..201925 1..208 99 -> Plus
arm_X 202123..202968 209..1054 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:39 Download gff for AT18705.complete
Subject Subject Range Query Range Percent Splice Strand
X 315782..315990 1..208 99 -> Plus
X 316188..317033 209..1054 100   Plus

AT18705.pep Sequence

Translation from 326 to 913

> AT18705.pep
MGKKGKGKKGKKPAAVVAPIEAPPCPPCPEPPKQMQPLDACPESSGPHDV
LRAQPNHYPALLRIPETMAVVGSENGCYDSICKLLRAGFRCAERVFVMAP
WGNYVVFRYHNNNDFIYFLFDGCTCDVNRFRYLDLSCGTAGFLFFDNMHD
VISYIIQSRKTRLYLENLNKIAIDQIVEEYGAVTYTQKAKCMRFA*

AT18705.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21444-PA 199 GF21444-PA 17..199 13..195 885 95.6 Plus
Dana\GF23714-PA 1104 GF23714-PA 969..1092 55..174 302 44 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12777-PA 198 GG12777-PA 1..198 1..195 1028 98 Plus
Dere\GG25362-PA 1176 GG25362-PA 994..1153 17..162 292 35.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23248-PA 202 GH23248-PA 19..202 14..195 853 84.8 Plus
Dgri\GH16944-PA 180 GH16944-PA 55..164 58..162 274 48.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-PA 195 CG12470-PA 1..195 1..195 1070 100 Plus
ms(3)76Cc-PA 1174 CG9392-PA 1018..1151 30..162 287 42.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14835-PA 202 GI14835-PA 32..202 25..195 870 93 Plus
Dmoj\GI11804-PA 188 GI11804-PA 10..179 17..179 291 35 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20370-PA 200 GL20370-PA 22..200 17..195 860 93.9 Plus
Dper\GL20950-PA 968 GL20950-PA 834..944 54..162 292 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11651-PA 200 GA11651-PA 22..200 17..195 860 93.9 Plus
Dpse\GA28640-PA 994 GA28640-PA 860..970 54..162 292 45.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19054-PA 195 GM19054-PA 1..195 1..195 1049 100 Plus
Dsec\GM19622-PA 1003 GM19622-PA 827..982 20..164 304 37.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16498-PA 195 GD16498-PA 1..195 1..195 1049 100 Plus
Dsim\GD14821-PA 286 GD14821-PA 151..265 55..164 305 44.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19500-PA 206 GJ19500-PA 23..206 14..195 858 91.8 Plus
Dvir\GJ13507-PA 940 GJ13507-PA 807..916 58..162 266 42.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24992-PA 201 GK24992-PA 41..201 35..195 853 96.9 Plus
Dwil\GK13028-PA 943 GK13028-PA 804..913 57..162 293 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16603-PA 198 GE16603-PA 1..198 1..195 1022 97 Plus
Dyak\GE19617-PA 1154 GE19617-PA 1022..1131 58..162 299 46.4 Plus
Dyak\GE23214-PA 1027 GE23214-PA 895..1004 58..162 298 46.4 Plus

AT18705.hyp Sequence

Translation from 326 to 913

> AT18705.hyp
MGKKGKGKKGKKPAAVVAPIEAPPCPPCPEPPKQMQPLDACPESSGPHDV
LRAQPNHYPALLRIPETMAVVGSENGCYDSICKLLRAGFRCAERVFVMAP
WGNYVVFRYHNNNDFIYFLFDGCTCDVNRFRYLDLSCGTAGFLFFDNMHD
VISYIIQSRKTRLYLENLNKIAIDQIVEEYGAVTYTQKAKCMRFA*

AT18705.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12470-PA 195 CG12470-PA 1..195 1..195 1070 100 Plus
ms(3)76Cc-PA 1174 CG9392-PA 1018..1151 30..162 287 42.6 Plus