Clone AT18809 Report

Search the DGRC for AT18809

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:188
Well:9
Vector:pOTB7
Associated Gene/TranscriptCG16894-RA
Protein status:AT18809.pep: gold
Sequenced Size:1000

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16894 2011-05-11 Manual selection by Charles Yu

Clone Sequence Records

AT18809.complete Sequence

1000 bp assembled on 2011-09-22

GenBank Submission: BT132645.1

> AT18809.complete
ACGAGCTCTTCCAAGTTTTAGGTTGTCATAGCTTAAATATTTGGTGGAGC
CATAGACTCCATCTCGTGCGATAGCCAAACAGTGCGATCACCATGTGGTA
TTCAACGGTTAGGAACCCAAGTATTGCCCTCATCAAACAGGGCTACCATA
TTCTCGCCGAATACAATCTGGTGAAGGAAGAGCTAAAGAACATCTATGCC
ATACCCAGTTACGCTTGTGGATTGCACTGGTTCGGCGTCATCTTTGTGCA
CAGTGGAATCTATGCGGGCAGCGTGTTTCGCTTCTCCATTCTGCTGCCGG
AAAATTTTCCGGCGGACATCAGCCTGCCCACGGTGGTCTTCTCGACGGAG
GTCCTACATCCGCACATCTGTCCGCAGAATAAGACCCTCGATCTGGCGCA
TTTCCTGAACGAGTGGCGCAAGGATGAGCACCACATCTGGCACGTGCTTC
GCTATATCCAGGCTATTTTCGCGGATCCAGAGGGCAGTATTTGCACCGGA
CAATCCTCTTCGGGGGATCTCGTGATCATGGATGAGGTTAGAAACATGAA
TGCCTTGAATATGTTGGCCAAAAGCCGGCCTGAATACATCAAACGAGTCC
AGGAGCAAGCAATCTTGTCGAGAAATCTTATCTACGACCGACCACCAACG
GAAGATCCGCACTATATTATCGTGGAGCCCTATTGTGCGGAACGGCATCT
GAAGTTCATGGACCAACTGAAGAGTCCCTGTTGGAAGGAGGCCACTTCCA
TGGACTGCTCCCAGCCGTCGGAGTACCTGGGACACATCGATTCCTCGAGG
CAGCTGGACGAGGAAGAGGCGAATCAGGTGGAGAAGCTACATCGCGGACG
TATTCCGGAACACCAGCGTGAAGAGTCGGAAGTTTCCCTGTAGCTTAATG
GAGATGCTAGCATACACGACCCATAACACATTTGTTACCCTGTATTCATA
AAATAAAAATATTTATTATTGTATTGTAATATATATTAATCTTTAAAAAA

AT18809.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16098667..16099660 994..1 4955 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20211584..20212578 995..1 4975 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20212783..20213777 995..1 4975 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:08:42 has no hits.

AT18809.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:09:50 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16098720..16099660 1..941 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-09-22 11:50:27 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
CG16894-RA 1..801 93..893 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:37:18 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
CG16894-RA 1..801 93..893 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:23:59 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
CG16894-RA 1..801 93..893 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 11:50:26 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
CG16894-RA 42..1016 1..975 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:37:18 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
CG16894-RA 42..1035 1..994 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:59 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
CG16894-RA 42..1035 1..994 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:09:50 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20211585..20212578 1..994 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:09:50 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20211585..20212578 1..994 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:09:50 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20211585..20212578 1..994 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:37:18 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16099090..16100083 1..994 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:35:29 Download gff for AT18809.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20212784..20213777 1..994 100   Minus

AT18809.hyp Sequence

Translation from 92 to 892

> AT18809.hyp
MWYSTVRNPSIALIKQGYHILAEYNLVKEELKNIYAIPSYACGLHWFGVI
FVHSGIYAGSVFRFSILLPENFPADISLPTVVFSTEVLHPHICPQNKTLD
LAHFLNEWRKDEHHIWHVLRYIQAIFADPEGSICTGQSSSGDLVIMDEVR
NMNALNMLAKSRPEYIKRVQEQAILSRNLIYDRPPTEDPHYIIVEPYCAE
RHLKFMDQLKSPCWKEATSMDCSQPSEYLGHIDSSRQLDEEEANQVEKLH
RGRIPEHQREESEVSL*

AT18809.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG16894-PA 266 CG16894-PA 1..266 1..266 1426 100 Plus
cbx-PB 244 CG10536-PB 16..209 11..211 492 45.5 Plus
cbx-PA 214 CG10536-PA 5..179 29..211 457 45.4 Plus
cbx-PC 183 CG10536-PC 5..148 29..211 360 39.9 Plus

AT18809.pep Sequence

Translation from 92 to 892

> AT18809.pep
MWYSTVRNPSIALIKQGYHILAEYNLVKEELKNIYAIPSYACGLHWFGVI
FVHSGIYAGSVFRFSILLPENFPADISLPTVVFSTEVLHPHICPQNKTLD
LAHFLNEWRKDEHHIWHVLRYIQAIFADPEGSICTGQSSSGDLVIMDEVR
NMNALNMLAKSRPEYIKRVQEQAILSRNLIYDRPPTEDPHYIIVEPYCAE
RHLKFMDQLKSPCWKEATSMDCSQPSEYLGHIDSSRQLDEEEANQVEKLH
RGRIPEHQREESEVSL*

AT18809.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13159-PA 266 GF13159-PA 1..249 1..249 1023 75.1 Plus
Dana\GF13050-PA 242 GF13050-PA 16..209 11..211 497 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20882-PA 266 GG20882-PA 1..262 1..262 1265 88.9 Plus
Dere\GG25253-PA 244 GG25253-PA 16..209 11..211 485 44.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22748-PA 211 GH22748-PA 12..205 10..206 567 53.5 Plus
Dgri\GH20212-PA 246 GH20212-PA 16..209 11..210 455 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16894-PA 266 CG16894-PA 1..266 1..266 1426 100 Plus
CG46338-PB 244 CG46338-PB 16..209 11..211 492 45.5 Plus
CG46338-PA 214 CG46338-PA 5..179 29..211 457 45.4 Plus
CG46338-PC 183 CG46338-PC 5..148 29..211 360 39.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18531-PA 256 GI18531-PA 6..250 4..250 636 47.2 Plus
Dmoj\GI20739-PA 245 GI20739-PA 16..210 11..211 460 44.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11711-PA 262 GL11711-PA 1..250 1..249 849 59.6 Plus
Dper\GL10235-PA 244 GL10235-PA 16..209 11..211 478 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14202-PA 262 GA14202-PA 1..250 1..249 859 60.4 Plus
Dpse\GA10380-PA 244 GA10380-PA 16..209 11..211 478 45.5 Plus
Dpse\GA10380-PB 214 GA10380-PB 5..179 29..211 441 45.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19805-PA 266 GM19805-PA 1..266 1..266 1367 94 Plus
Dsec\GM20572-PA 244 GM20572-PA 16..209 11..211 499 46 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25298-PA 188 GD25298-PA 1..143 1..142 629 82.8 Plus
Dsim\GD10043-PA 244 GD10043-PA 16..209 11..211 501 46 Plus
Dsim\GD25298-PA 188 GD25298-PA 110..188 187..266 346 83.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21397-PA 256 GJ21397-PA 8..247 6..246 699 52.5 Plus
Dvir\GJ20476-PA 245 GJ20476-PA 16..209 11..210 482 45.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15683-PA 273 GK15683-PA 1..260 1..258 822 57.3 Plus
Dwil\GK21357-PA 251 GK21357-PA 16..209 11..211 436 40.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13821-PA 266 GE13821-PA 1..262 1..262 1265 88.5 Plus
Dyak\GE21973-PA 244 GE21973-PA 16..209 11..211 492 45 Plus