Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT18929.complete Sequence
2157 bp assembled on 2011-04-26
GenBank Submission: BT126376.1
> AT18929.complete
GCAAAATTGTATGTGAAGCCCAGGTTTTTTGTAATTCCATCAAAATGTCC
ATCGTCCTTGATGTTATCCAACAAGTTGTGTTGCAGAAAGCTTACGATCT
AACATGCGAGGCAGCCATTTTAGCCTTGAGAAAATGTGGCAAACTGAAAA
TAGAGGATGGTAAATCGAAAGCAAAGCGTGAAAAGCCTCTACCTCCGGTC
AAGCCTATTTCCCAGGAAGCGGTTTCACCAATGAAAGCTCCAACGATTCC
CGAGGCTAACACCATTCCAAAATATACGGGACGGGACATGCCTCGAAAGA
ACTTTGGCTCCATCGATCCCCCCCAATGCTCCTGCATGCGTGTGTGCCGA
GATAGTTACTTCTCTTAGACGAAAAAGAACGCTTAAAAACAATTGCAACT
TTAATAGAATAGGAATAGCAAAATTTCAAGGGACCTCAGGCATCGAATCT
CATTCCATCTTGTATCCGTACAATTATCAAACGTAACACTAATAACAGTT
TTTGGTAGCAACTAACAGGTTTGAATATGAGTATTTACGGTGGTTTAGGC
CACGTCTGCTCCCAAGGAGTGCAGATCGTACAGGACTTCCAAAATGGCAG
CAACACTCCAGGCCTGCGTGCGACAGGAGTCACCGCAGTAGGAGCCATTA
TCGTTGGTCAACTCGGGCAATCCGCGCCAATGGGATGTCTGTAGCTCTCG
GAGATGGGCCCGTAGTATGGCCCAGGTCTCGGCAATGGTCTCGTCCAAAT
GGCCACACTTTTTGGCGAAGATCAGGCGCGCCCGCAGGTAAAAACCGATG
GGCCATACCCACTCCGGCCCCTGGTGGTAGTTTGCGCCATGGGCTACAGT
GCAATCGGTGGAGTCATTTGAGTTGTCATAGTTGGCCCTATAGTTCCAGT
CCTCGGGATCCAGCGTCTTCATGCCCAGCGGTCCCAGAAGATACTTTTTG
GCGCGCTCCAGTGCACGCCAGGCATTCTGAGGATTGCACAGGTCGGGAGC
CACGGTCAAGGTGATGGGGAAGTTGCATCGCAGCTGGTAGTCCGTCCAAC
TCTGGGTGGCTCCATAGCTGTCCTTGTAGATAAGCTTCTTGTTGGCCACC
GAGCAGGTTTCCGATTCGGATACAAAGAAATACTTGTCAAAGTTGTTCTT
GATGCGATCCGCCCACTCCTTGTAGCTCCACTTGGTCACTTCGCCCGATG
GACCCTTTCGTTCCACGCCGGTGTACGGGATAACCTCCTTTTCGGCTAGG
CTTTGCATAAACCGGAGTACGGCATACTGGAGGCCAACGAGCTCCACGGC
TGATCCGTCGCGCGGCGTACTTGGACGTCCCTTGTTTCCGGCCTTCTGTG
AGGATCCCATTTTGTCCATCCAAGTGCCGCAGTTGAAGTTATTGCCTCCG
AATACAAAGCCAGTCTCCGGGTGAATTCCGATCTGATTGTTAAAGCCCTG
GTCCACCATGTGCGCATCGATCTCATAGCCTGCATTGCGCTCCCTATACT
GCAAGCCCTGAAAATGCACCTGCAGTGCCTCCTGCATCACGTCGAAGAGA
AGTTGGTCGAAGGCACCTGGAGCATGGGCATCGGCATCGTCGTACGGAAA
GATGCGGGACACTTTGTCCTTTAGGATCTCGGCACCCTTGGGGGCATCCT
CCACATACTGCTTGATGCAGTACATCCACCACCAGATGGCATCGCGGCAG
TTGAATCTCGGCTTGCTGCCGCTGTCCAAAAGATTCGGAATGAGTCCGTG
TCGAAGGGTCTGACCAAATCCAATGATGATGAAGCGAGCTTCGTTGTAAC
GGCCGGTGAGGAACATGGAGCCACGCAGAGCGATGAAGGTATCACGGCCC
CAGCACCGCATATAGCCTACATAAATGGTTGAATATTCCATTATTCCGTT
TCGATTGTTAAATATAATAGATAAACTCACCCGTTGAGAAATGCGGCAGA
CCAGCAAATAGAGTCACACATTGCTTTGGAGGCTTGGGTGGACTTAGAGC
AGGACTGAATCCCGGCAGATTGGCCGACTTGCAAACGGAGAGGAACTGCA
ACGTGGACAGGGCCAGGGATTGTGGGAAACTGTGGCCATTCTTAATGAAG
CTGTAAAAATTAAAGACTTAATAAAAACTCCATGAATGCAAAAAAAAAAA
AAAAAAA
AT18929.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:35:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 17204266..17206261 | 2139..144 | 9920 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 17206319..17206465 | 147..1 | 675 | 97.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21317807..21319803 | 2140..144 | 9865 | 99.6 | Minus |
2R | 25286936 | 2R | 21319861..21320007 | 147..1 | 720 | 99.3 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 21319006..21321002 | 2140..144 | 9865 | 99.5 | Minus |
2R | 25260384 | 2R | 21321060..21321206 | 147..1 | 720 | 99.3 | Minus |
Blast to na_te.dros performed on 2019-03-15 10:35:56 has no hits.
AT18929.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:37:04 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 17204266..17206261 | 144..2139 | 99 | <- | Minus |
chr2R | 17206323..17206465 | 1..143 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-27 15:22:53 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33655-RB | 1..324 | 45..368 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:20:56 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33655-RB | 1..324 | 45..368 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:07:36 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33655-RB | 1..324 | 45..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-27 15:22:53 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9485-RC | 3216..3388 | 1932..2103 | 98 | == | Minus |
CG9485-RC | 3389..4878 | 378..1867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:20:56 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33655-RB | 11..2149 | 1..2139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:36 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33655-RB | 11..2149 | 1..2139 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:04 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21317808..21319803 | 144..2139 | 99 | <- | Minus |
2R | 21319865..21320007 | 1..143 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:04 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21317808..21319803 | 144..2139 | 99 | <- | Minus |
2R | 21319865..21320007 | 1..143 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:04 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21317808..21319803 | 144..2139 | 99 | <- | Minus |
2R | 21319865..21320007 | 1..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:20:56 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17205313..17207308 | 144..2139 | 99 | <- | Minus |
arm_2R | 17207370..17207512 | 1..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:06:45 Download gff for
AT18929.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21319007..21321002 | 144..2139 | 99 | <- | Minus |
2R | 21321064..21321206 | 1..143 | 100 | | Minus |
AT18929.pep Sequence
Translation from 2 to 367
> AT18929.pep
KIVCEAQVFCNSIKMSIVLDVIQQVVLQKAYDLTCEAAILALRKCGKLKI
EDGKSKAKREKPLPPVKPISQEAVSPMKAPTIPEANTIPKYTGRDMPRKN
FGSIDPPQCSCMRVCRDSYFS*
AT18929.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF12104-PA | 107 | GF12104-PA | 1..107 | 15..121 | 298 | 58.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33655-PB | 107 | CR33655-PB | 1..107 | 15..121 | 559 | 100 | Plus |
CG33655-PC | 40 | CG33655-PC | 1..34 | 15..48 | 162 | 97.1 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL10751-PA | 185 | GL10751-PA | 130..185 | 65..121 | 146 | 53.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA24471-PA | 185 | GA24471-PA | 130..185 | 65..121 | 146 | 53.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15728-PA | 104 | GM15728-PA | 1..104 | 15..121 | 501 | 92.5 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25206-PA | 104 | GD25206-PA | 1..104 | 15..121 | 512 | 94.4 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ22383-PA | 113 | GJ22383-PA | 1..113 | 15..121 | 140 | 35.2 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK21707-PA | 110 | GK21707-PA | 1..110 | 15..121 | 201 | 46 | Plus |
AT18929.hyp Sequence
Translation from 1513 to 1881
> AT18929.hyp
MHLQCLLHHVEEKLVEGTWSMGIGIVVRKYAGHLVLQDLGTLGGILHILL
DAVHPPPDSIAAVESRLAAAVQKIRNESVSKGLTKSNDDEASLVVTASEE
HGATQSDEGITAPAPHIAYING*
Sequence AT18929.hyp has no blast hits.