Clone AT18929 Report

Search the DGRC for AT18929

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:189
Well:29
Vector:pOTB7
Associated Gene/TranscriptCG33655-RB
Protein status:AT18929.pep: gold
Sequenced Size:2157

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33655-RB 2011-03-10 Manual selection by Sue Celniker

Clone Sequence Records

AT18929.complete Sequence

2157 bp assembled on 2011-04-26

GenBank Submission: BT126376.1

> AT18929.complete
GCAAAATTGTATGTGAAGCCCAGGTTTTTTGTAATTCCATCAAAATGTCC
ATCGTCCTTGATGTTATCCAACAAGTTGTGTTGCAGAAAGCTTACGATCT
AACATGCGAGGCAGCCATTTTAGCCTTGAGAAAATGTGGCAAACTGAAAA
TAGAGGATGGTAAATCGAAAGCAAAGCGTGAAAAGCCTCTACCTCCGGTC
AAGCCTATTTCCCAGGAAGCGGTTTCACCAATGAAAGCTCCAACGATTCC
CGAGGCTAACACCATTCCAAAATATACGGGACGGGACATGCCTCGAAAGA
ACTTTGGCTCCATCGATCCCCCCCAATGCTCCTGCATGCGTGTGTGCCGA
GATAGTTACTTCTCTTAGACGAAAAAGAACGCTTAAAAACAATTGCAACT
TTAATAGAATAGGAATAGCAAAATTTCAAGGGACCTCAGGCATCGAATCT
CATTCCATCTTGTATCCGTACAATTATCAAACGTAACACTAATAACAGTT
TTTGGTAGCAACTAACAGGTTTGAATATGAGTATTTACGGTGGTTTAGGC
CACGTCTGCTCCCAAGGAGTGCAGATCGTACAGGACTTCCAAAATGGCAG
CAACACTCCAGGCCTGCGTGCGACAGGAGTCACCGCAGTAGGAGCCATTA
TCGTTGGTCAACTCGGGCAATCCGCGCCAATGGGATGTCTGTAGCTCTCG
GAGATGGGCCCGTAGTATGGCCCAGGTCTCGGCAATGGTCTCGTCCAAAT
GGCCACACTTTTTGGCGAAGATCAGGCGCGCCCGCAGGTAAAAACCGATG
GGCCATACCCACTCCGGCCCCTGGTGGTAGTTTGCGCCATGGGCTACAGT
GCAATCGGTGGAGTCATTTGAGTTGTCATAGTTGGCCCTATAGTTCCAGT
CCTCGGGATCCAGCGTCTTCATGCCCAGCGGTCCCAGAAGATACTTTTTG
GCGCGCTCCAGTGCACGCCAGGCATTCTGAGGATTGCACAGGTCGGGAGC
CACGGTCAAGGTGATGGGGAAGTTGCATCGCAGCTGGTAGTCCGTCCAAC
TCTGGGTGGCTCCATAGCTGTCCTTGTAGATAAGCTTCTTGTTGGCCACC
GAGCAGGTTTCCGATTCGGATACAAAGAAATACTTGTCAAAGTTGTTCTT
GATGCGATCCGCCCACTCCTTGTAGCTCCACTTGGTCACTTCGCCCGATG
GACCCTTTCGTTCCACGCCGGTGTACGGGATAACCTCCTTTTCGGCTAGG
CTTTGCATAAACCGGAGTACGGCATACTGGAGGCCAACGAGCTCCACGGC
TGATCCGTCGCGCGGCGTACTTGGACGTCCCTTGTTTCCGGCCTTCTGTG
AGGATCCCATTTTGTCCATCCAAGTGCCGCAGTTGAAGTTATTGCCTCCG
AATACAAAGCCAGTCTCCGGGTGAATTCCGATCTGATTGTTAAAGCCCTG
GTCCACCATGTGCGCATCGATCTCATAGCCTGCATTGCGCTCCCTATACT
GCAAGCCCTGAAAATGCACCTGCAGTGCCTCCTGCATCACGTCGAAGAGA
AGTTGGTCGAAGGCACCTGGAGCATGGGCATCGGCATCGTCGTACGGAAA
GATGCGGGACACTTTGTCCTTTAGGATCTCGGCACCCTTGGGGGCATCCT
CCACATACTGCTTGATGCAGTACATCCACCACCAGATGGCATCGCGGCAG
TTGAATCTCGGCTTGCTGCCGCTGTCCAAAAGATTCGGAATGAGTCCGTG
TCGAAGGGTCTGACCAAATCCAATGATGATGAAGCGAGCTTCGTTGTAAC
GGCCGGTGAGGAACATGGAGCCACGCAGAGCGATGAAGGTATCACGGCCC
CAGCACCGCATATAGCCTACATAAATGGTTGAATATTCCATTATTCCGTT
TCGATTGTTAAATATAATAGATAAACTCACCCGTTGAGAAATGCGGCAGA
CCAGCAAATAGAGTCACACATTGCTTTGGAGGCTTGGGTGGACTTAGAGC
AGGACTGAATCCCGGCAGATTGGCCGACTTGCAAACGGAGAGGAACTGCA
ACGTGGACAGGGCCAGGGATTGTGGGAAACTGTGGCCATTCTTAATGAAG
CTGTAAAAATTAAAGACTTAATAAAAACTCCATGAATGCAAAAAAAAAAA
AAAAAAA

AT18929.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17204266..17206261 2139..144 9920 99.8 Minus
chr2R 21145070 chr2R 17206319..17206465 147..1 675 97.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21317807..21319803 2140..144 9865 99.6 Minus
2R 25286936 2R 21319861..21320007 147..1 720 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21319006..21321002 2140..144 9865 99.5 Minus
2R 25260384 2R 21321060..21321206 147..1 720 99.3 Minus
Blast to na_te.dros performed on 2019-03-15 10:35:56 has no hits.

AT18929.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:37:04 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17204266..17206261 144..2139 99 <- Minus
chr2R 17206323..17206465 1..143 97   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-27 15:22:53 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
CG33655-RB 1..324 45..368 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:20:56 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
CG33655-RB 1..324 45..368 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:07:36 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
CG33655-RB 1..324 45..368 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-27 15:22:53 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
CG9485-RC 3216..3388 1932..2103 98 == Minus
CG9485-RC 3389..4878 378..1867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:20:56 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
CG33655-RB 11..2149 1..2139 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:36 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
CG33655-RB 11..2149 1..2139 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:04 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21317808..21319803 144..2139 99 <- Minus
2R 21319865..21320007 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:04 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21317808..21319803 144..2139 99 <- Minus
2R 21319865..21320007 1..143 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:37:04 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21317808..21319803 144..2139 99 <- Minus
2R 21319865..21320007 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:20:56 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17205313..17207308 144..2139 99 <- Minus
arm_2R 17207370..17207512 1..143 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:06:45 Download gff for AT18929.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21319007..21321002 144..2139 99 <- Minus
2R 21321064..21321206 1..143 100   Minus

AT18929.pep Sequence

Translation from 2 to 367

> AT18929.pep
KIVCEAQVFCNSIKMSIVLDVIQQVVLQKAYDLTCEAAILALRKCGKLKI
EDGKSKAKREKPLPPVKPISQEAVSPMKAPTIPEANTIPKYTGRDMPRKN
FGSIDPPQCSCMRVCRDSYFS*

AT18929.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12104-PA 107 GF12104-PA 1..107 15..121 298 58.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33655-PB 107 CR33655-PB 1..107 15..121 559 100 Plus
CG33655-PC 40 CG33655-PC 1..34 15..48 162 97.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10751-PA 185 GL10751-PA 130..185 65..121 146 53.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24471-PA 185 GA24471-PA 130..185 65..121 146 53.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15728-PA 104 GM15728-PA 1..104 15..121 501 92.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25206-PA 104 GD25206-PA 1..104 15..121 512 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22383-PA 113 GJ22383-PA 1..113 15..121 140 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21707-PA 110 GK21707-PA 1..110 15..121 201 46 Plus

AT18929.hyp Sequence

Translation from 1513 to 1881

> AT18929.hyp
MHLQCLLHHVEEKLVEGTWSMGIGIVVRKYAGHLVLQDLGTLGGILHILL
DAVHPPPDSIAAVESRLAAAVQKIRNESVSKGLTKSNDDEASLVVTASEE
HGATQSDEGITAPAPHIAYING*
Sequence AT18929.hyp has no blast hits.