Clone AT18937 Report

Search the DGRC for AT18937

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:189
Well:37
Vector:pOTB7
Associated Gene/TranscriptPGAP5-RB
Protein status:AT18937.pep: gold
Sequenced Size:1437

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8455 2002-01-01 Sim4 clustering to Release 2
CG8455 2002-03-19 Blastp of sequenced clone
CG8455 2003-01-01 Sim4 clustering to Release 3
CG8455 2008-04-29 Release 5.5 accounting
CG8455 2008-08-15 Release 5.9 accounting
CG8455 2008-12-18 5.12 accounting

Clone Sequence Records

AT18937.complete Sequence

1437 bp (1437 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094655

> AT18937.complete
CTGAAATGCGCTTTCTTTATGCCTGCTTTGTGATCGTGCTGTGCGCCCTG
ATCTTCTGCGAATATGTGGCGGACTTTGTGGTGCTGCAAAAGTGCAAGTG
GCCGGAGATAAAGCGAAAGAAGTATGTGGACGATCCGCTTAGGGCAATGA
TTCTAGCGGATCCGCATCTGCTGGGACCGCATCGTGGTCACTGGCTGGAC
AAGCTCTACCGGGAGTGGCACATGACGCGGGCCTTTCAGGCGGCATCACG
TCTGTTCCAGCCCGACGTGGTCTTCGTCTTGGGCGATTTGTTCGACGAGG
GCGACATGGTCAGCGACAAGCAGTTTCAGGAATATGTGTGGCGCTACCTG
AAGATGTTCCACCTACCACCGGGAATTCCGCTCATCAGTGTCGCGGGAAA
TCATGACGTGGGCTTCCATTACAAAATGCATCCCTTCTTTATGTCGCGTT
TTGAGAGTTATCTGAACAACTCCTCGGTCAATTTGTACACCATTAAACAA
ATCCATTTTGTGGTGATAAATTCGATGGCTATGGAAGGTGATGGTTGCAT
GTTTTGCACCCAGGCCGAGGATCAGTTGAAAAACATTTCGCGGACTTTGT
ACTGCATGAAGTATCCACTAGAGGCGGAGTGCGCTCGCACCAGGCGGCAC
CCGTACAGCCAGCCAATTCTATTGCAGCACTTTCCCACCTACCGCATTTC
GGATACCATGTGCGAGGAGCACGATGCTCCGTACATCGAGGCGTTCCGAG
AGCGGTTTCATGTGCTCTCCAAGGATGCCACGGATATGCTGGGAGAGCTT
CTTAAGCCAAGGCTGGCATTCGCCGGTCATTCACATCACTTCTGTCACAG
TGTAAATCGACTGGGCATCGATGAGTACACGGTGGCCTCATTCAGCTGGC
GAAACAAAGTTAATCCCAGCTTTATGCTGGCCACTATAACCCCCGATGAC
TATGTGGTTTCCAAGTGCAAAATGCTGCCACAGCAGTTTGTCTTCAATAG
CTATCTGAGTGCTGGCATTCTTTGCCTAATTGTCATCGGGTTCCAGCTAC
GAAAGTGCATCCAAAGCAGAAGACAGTCGTCGGCTGTAGATCATCGGAAG
GTTAATTATTTAGACTAGATACGCCAGATTCCAGACTCAGATCCCAGATC
CAGATCCAGACAGAGGTCATATCATTCCTGCTGCTTTGCAACCGCTTAAC
TATATTCTAGGTGTACAAAATTCGGATAGTATGTATGATCTATTTATTGA
ATTTATCACAGACATTATGCTTGTAAAGTCAAACGGAATACATAATGAGA
CACAGTCTGCTGACTACAAATCGAAAATGCCAAAAAAATAATGCTTGAAC
AAAGGCTGGAAAGTAAAGAACGGATACAAACAGAACAATTAAATAAAGCT
ATATTATAATACAATAAAAAAAAAAAAAAAAAAAAAA

AT18937.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8455-RB 1575 CG8455-RB 161..1573 1..1413 7020 99.7 Plus
CG8455.a 1570 CG8455.a 161..1568 1..1413 6920 99.4 Plus
CG8455-RA 1656 CG8455-RA 161..1268 1..1108 5495 99.7 Plus
CG8455-RA 1656 CG8455-RA 1334..1638 1109..1413 1525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8198525..8199030 425..930 2530 100 Plus
chr2L 23010047 chr2L 8198034..8198457 1..424 2120 100 Plus
chr2L 23010047 chr2L 8199342..8199648 1109..1415 1535 100 Plus
chr2L 23010047 chr2L 8199097..8199276 929..1108 900 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8199529..8200034 425..930 2500 99.6 Plus
2L 23513712 2L 8199038..8199461 1..424 2105 99.8 Plus
2L 23513712 2L 8200346..8200650 1109..1413 1525 100 Plus
2L 23513712 2L 8200101..8200280 929..1108 900 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8199529..8200034 425..930 2500 99.6 Plus
2L 23513712 2L 8199038..8199461 1..424 2105 99.7 Plus
2L 23513712 2L 8200346..8200650 1109..1413 1525 100 Plus
2L 23513712 2L 8200101..8200280 929..1108 900 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:16:26 has no hits.

AT18937.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:17:33 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8198034..8198457 1..424 100 -> Plus
chr2L 8198525..8199029 425..929 100 -> Plus
chr2L 8199098..8199276 930..1108 100 -> Plus
chr2L 8199342..8199648 1109..1415 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:13:09 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 1..1113 6..1118 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:31:59 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 1..1113 6..1118 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:09:59 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 1..1113 6..1118 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:05:01 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 1..1113 6..1118 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:42 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 1..1113 6..1118 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:57:56 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 80..1493 1..1415 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:31:59 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 80..1493 1..1415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:59 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 86..1499 1..1415 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:05:01 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
CG8455-RB 80..1493 1..1415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:42 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
PGAP5-RB 86..1499 1..1415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:33 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8199038..8199461 1..424 99 -> Plus
2L 8199529..8200033 425..929 99 -> Plus
2L 8200102..8200280 930..1108 100 -> Plus
2L 8200346..8200651 1109..1415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:33 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8199038..8199461 1..424 99 -> Plus
2L 8199529..8200033 425..929 99 -> Plus
2L 8200102..8200280 930..1108 100 -> Plus
2L 8200346..8200651 1109..1415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:17:33 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8199038..8199461 1..424 99 -> Plus
2L 8199529..8200033 425..929 99 -> Plus
2L 8200102..8200280 930..1108 100 -> Plus
2L 8200346..8200651 1109..1415 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:59 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8200102..8200280 930..1108 100 -> Plus
arm_2L 8200346..8200651 1109..1415 99   Plus
arm_2L 8199038..8199461 1..424 99 -> Plus
arm_2L 8199529..8200033 425..929 99 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:38:48 Download gff for AT18937.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8199038..8199461 1..424 99 -> Plus
2L 8199529..8200033 425..929 99 -> Plus
2L 8200102..8200280 930..1108 100 -> Plus
2L 8200346..8200651 1109..1415 99   Plus

AT18937.hyp Sequence

Translation from 2 to 1117

> AT18937.hyp
EMRFLYACFVIVLCALIFCEYVADFVVLQKCKWPEIKRKKYVDDPLRAMI
LADPHLLGPHRGHWLDKLYREWHMTRAFQAASRLFQPDVVFVLGDLFDEG
DMVSDKQFQEYVWRYLKMFHLPPGIPLISVAGNHDVGFHYKMHPFFMSRF
ESYLNNSSVNLYTIKQIHFVVINSMAMEGDGCMFCTQAEDQLKNISRTLY
CMKYPLEAECARTRRHPYSQPILLQHFPTYRISDTMCEEHDAPYIEAFRE
RFHVLSKDATDMLGELLKPRLAFAGHSHHFCHSVNRLGIDEYTVASFSWR
NKVNPSFMLATITPDDYVVSKCKMLPQQFVFNSYLSAGILCLIVIGFQLR
KCIQSRRQSSAVDHRKVNYLD*

AT18937.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-PB 370 CG8455-PB 1..370 2..371 2005 100 Plus
PGAP5-PC 367 CG8455-PC 1..367 2..368 1988 100 Plus
PGAP5-PA 367 CG8455-PA 1..367 2..368 1988 100 Plus

AT18937.pep Sequence

Translation from 5 to 1117

> AT18937.pep
MRFLYACFVIVLCALIFCEYVADFVVLQKCKWPEIKRKKYVDDPLRAMIL
ADPHLLGPHRGHWLDKLYREWHMTRAFQAASRLFQPDVVFVLGDLFDEGD
MVSDKQFQEYVWRYLKMFHLPPGIPLISVAGNHDVGFHYKMHPFFMSRFE
SYLNNSSVNLYTIKQIHFVVINSMAMEGDGCMFCTQAEDQLKNISRTLYC
MKYPLEAECARTRRHPYSQPILLQHFPTYRISDTMCEEHDAPYIEAFRER
FHVLSKDATDMLGELLKPRLAFAGHSHHFCHSVNRLGIDEYTVASFSWRN
KVNPSFMLATITPDDYVVSKCKMLPQQFVFNSYLSAGILCLIVIGFQLRK
CIQSRRQSSAVDHRKVNYLD*

AT18937.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14624-PA 368 GF14624-PA 1..366 1..365 1811 89.6 Plus
Dana\GF20377-PA 366 GF20377-PA 1..365 1..362 1511 76.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10521-PA 367 GG10521-PA 1..367 1..367 1956 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11510-PA 370 GH11510-PA 1..370 1..367 1693 81.9 Plus
Dgri\GH21045-PA 355 GH21045-PA 9..144 2..136 150 26.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
PGAP5-PB 370 CG8455-PB 1..370 1..370 2005 100 Plus
PGAP5-PC 367 CG8455-PC 1..367 1..367 1988 100 Plus
PGAP5-PA 367 CG8455-PA 1..367 1..367 1988 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17006-PA 368 GI17006-PA 1..360 1..360 1600 78.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18726-PA 370 GL18726-PA 1..370 1..367 1733 85.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21091-PA 370 GA21091-PA 1..370 1..367 1733 85.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16830-PA 367 GM16830-PA 1..367 1..367 1971 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23512-PA 367 GD23512-PA 1..367 1..367 1978 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24314-PA 369 GJ24314-PA 1..358 1..358 1715 85.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15156-PA 368 GK15156-PA 1..364 1..365 1691 84.4 Plus
Dwil\GK15194-PA 370 GK15194-PA 1..362 1..358 1215 61 Plus
Dwil\GK21981-PA 356 GK21981-PA 9..144 2..136 149 25.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18742-PA 367 GE18742-PA 1..367 1..367 1971 98.6 Plus