Clone AT18996 Report

Search the DGRC for AT18996

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:189
Well:96
Vector:pOTB7
Associated Gene/TranscriptCG43059-RA
Protein status:AT18996.pep: gold
Sequenced Size:443

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG43059-RA 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

AT18996.complete Sequence

443 bp assembled on 2011-03-18

GenBank Submission: BT126171.1

> AT18996.complete
TTCACACCAGTCTACAAACACACTCACAGGCAGACTGAAACATAGAGTCT
TGATCAAATTTTAATAGTACGCTTTGCATTTTGTCGTAGCTTTTTGCAAT
GATTTGCGTATCACGTCTGGTCATCATCAATTTGCCCAGTGTCTGGTCAT
CCAAGAGATCCAAAGACTCGGAGGAAAAGGATAGCAAAGATTCTGTAAAG
CCAGCTGCACCCAGGGATTTTCAGAGACCTTTGCAGATCCACACAAAAAG
GGGCTACATCAAGTGGTTCAACAAGCTGAGTCGCTGCCACAAAACTCGTC
ATTTTTCAGGCAGAATGCATCCCAGGCTGTAGAAACGAATTAAAAACCAG
GATCTCACCTCGGTTGTTGCTTACTTGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT18996.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8310567..8310756 377..188 950 100 Minus
chr3L 24539361 chr3L 8310803..8310991 189..1 945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8318540..8318731 379..188 945 99.5 Minus
3L 28110227 3L 8318778..8318966 189..1 945 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8311640..8311831 379..188 945 99.4 Minus
3L 28103327 3L 8311878..8312066 189..1 945 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:33:14 has no hits.

AT18996.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:34:01 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8310803..8310991 1..189 100   Minus
chr3L 8310567..8310754 190..377 100 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:22 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
CG43059-RA 1..234 99..332 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:48 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
CG43059-RA 1..234 99..332 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:04 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
CG43059-RA 1..234 99..332 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:21 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
CG43059-RA 1..377 1..377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:48 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
CG43059-RA 1..377 1..377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:04 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
CG43059-RA 1..377 1..377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:01 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8318778..8318966 1..189 100   Minus
3L 8318542..8318729 190..377 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:01 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8318778..8318966 1..189 100   Minus
3L 8318542..8318729 190..377 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:01 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8318778..8318966 1..189 100   Minus
3L 8318542..8318729 190..377 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:48 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8311642..8311829 190..377 99 <- Minus
arm_3L 8311878..8312066 1..189 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:07 Download gff for AT18996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8311878..8312066 1..189 100   Minus
3L 8311642..8311829 190..377 99 <- Minus

AT18996.hyp Sequence

Translation from 98 to 331

> AT18996.hyp
MICVSRLVIINLPSVWSSKRSKDSEEKDSKDSVKPAAPRDFQRPLQIHTK
RGYIKWFNKLSRCHKTRHFSGRMHPRL*

AT18996.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG43059-PA 77 CG43059-PA 1..77 1..77 414 100 Plus

AT18996.pep Sequence

Translation from 98 to 331

> AT18996.pep
MICVSRLVIINLPSVWSSKRSKDSEEKDSKDSVKPAAPRDFQRPLQIHTK
RGYIKWFNKLSRCHKTRHFSGRMHPRL*

AT18996.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG43059-PA 77 CG43059-PA 1..77 1..77 414 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24948-PA 110 GM24948-PA 18..110 1..77 371 79.6 Plus