AT18996.complete Sequence
443 bp assembled on 2011-03-18
GenBank Submission: BT126171.1
> AT18996.complete
TTCACACCAGTCTACAAACACACTCACAGGCAGACTGAAACATAGAGTCT
TGATCAAATTTTAATAGTACGCTTTGCATTTTGTCGTAGCTTTTTGCAAT
GATTTGCGTATCACGTCTGGTCATCATCAATTTGCCCAGTGTCTGGTCAT
CCAAGAGATCCAAAGACTCGGAGGAAAAGGATAGCAAAGATTCTGTAAAG
CCAGCTGCACCCAGGGATTTTCAGAGACCTTTGCAGATCCACACAAAAAG
GGGCTACATCAAGTGGTTCAACAAGCTGAGTCGCTGCCACAAAACTCGTC
ATTTTTCAGGCAGAATGCATCCCAGGCTGTAGAAACGAATTAAAAACCAG
GATCTCACCTCGGTTGTTGCTTACTTGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AT18996.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 8310567..8310756 | 377..188 | 950 | 100 | Minus |
chr3L | 24539361 | chr3L | 8310803..8310991 | 189..1 | 945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8318540..8318731 | 379..188 | 945 | 99.5 | Minus |
3L | 28110227 | 3L | 8318778..8318966 | 189..1 | 945 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 8311640..8311831 | 379..188 | 945 | 99.4 | Minus |
3L | 28103327 | 3L | 8311878..8312066 | 189..1 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 22:33:14 has no hits.
AT18996.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:34:01 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 8310803..8310991 | 1..189 | 100 | | Minus |
chr3L | 8310567..8310754 | 190..377 | 100 | <- | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:22 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43059-RA | 1..234 | 99..332 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:48 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43059-RA | 1..234 | 99..332 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:30:04 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43059-RA | 1..234 | 99..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:21 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43059-RA | 1..377 | 1..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:48 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43059-RA | 1..377 | 1..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:04 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43059-RA | 1..377 | 1..377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:01 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8318778..8318966 | 1..189 | 100 | | Minus |
3L | 8318542..8318729 | 190..377 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:01 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8318778..8318966 | 1..189 | 100 | | Minus |
3L | 8318542..8318729 | 190..377 | 99 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:34:01 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8318778..8318966 | 1..189 | 100 | | Minus |
3L | 8318542..8318729 | 190..377 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:48 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8311642..8311829 | 190..377 | 99 | <- | Minus |
arm_3L | 8311878..8312066 | 1..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:07 Download gff for
AT18996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8311878..8312066 | 1..189 | 100 | | Minus |
3L | 8311642..8311829 | 190..377 | 99 | <- | Minus |
AT18996.hyp Sequence
Translation from 98 to 331
> AT18996.hyp
MICVSRLVIINLPSVWSSKRSKDSEEKDSKDSVKPAAPRDFQRPLQIHTK
RGYIKWFNKLSRCHKTRHFSGRMHPRL*
AT18996.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43059-PA | 77 | CG43059-PA | 1..77 | 1..77 | 414 | 100 | Plus |
AT18996.pep Sequence
Translation from 98 to 331
> AT18996.pep
MICVSRLVIINLPSVWSSKRSKDSEEKDSKDSVKPAAPRDFQRPLQIHTK
RGYIKWFNKLSRCHKTRHFSGRMHPRL*
AT18996.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43059-PA | 77 | CG43059-PA | 1..77 | 1..77 | 414 | 100 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:25:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM24948-PA | 110 | GM24948-PA | 18..110 | 1..77 | 371 | 79.6 | Plus |