Clone AT19083 Report

Search the DGRC for AT19083

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:190
Well:83
Vector:pOTB7
Associated Gene/TranscriptCG31845-RA
Protein status:AT19083.pep: wuzgold
Sequenced Size:893

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31845 2003-01-01 Sim4 clustering to Release 3
CG31845 2008-04-29 Release 5.5 accounting
CG31845 2008-08-15 Release 5.9 accounting
CG31845 2008-12-18 5.12 accounting

Clone Sequence Records

AT19083.complete Sequence

893 bp (893 high quality bases) assembled on 2005-07-22

GenBank Submission: BT023798

> AT19083.complete
GAGGGGGGCTGGATATGGAAGGGGGGCTTTGGGAAGCCCAGAACAGGAGT
AGGCAGCAACAGGGCGAAAAAAAAAAAACGGCCATCAATGGAGGCAGCTC
CTCTTGGTTGCAAGTGCAACGGCTCCTAGTTGGCGAGCTGGGGCATTTCC
CCGCCATCCCGTCTCTGTCGCTGTCCCAGTGTTTTTGTGTTTTTGCCATT
CGGTCGCTTTTGGTTCGGTTCGCTGGTTCGACGTTTGGGCCCGCTCGGTC
CCGACGTGTTTTTTGTTGGGTGTCATACAAAAACATTTTGCCGCCAAACA
GAATGGCTAAGGCAGCTCCTCCTGCTGCTCCTCCGGCTCCTGCTGCTGCT
GCTGCTGCTGCTGCCCAACCTGTCAACCGCCTTCCCCCTGGACTCGTCCC
ACTCTCTGCTCCTTCTCCACCAGCGATGCAAACTTTGCGAATCACTTTTT
TGGTTGCATGACCAACGCACAGCACAGCACACCGTGGGCTTGCGTAAGTT
CGGGCTTAAAGTTTGGCCAACGCGGCGTATGAGCAATGTTTAAAGGGTGC
TACCTGACAGAGTTCAGTCCACTCACCTGACAAACAACTGCTCCTGATTG
TTTACCCGCCAGGACACGACCGTCGCACCTGCAAACAGAAGGAATGCTGT
GGAATAATAACTAAAGATGTGCGGATTTCTAGAAGGATATAGGGACTACA
TGTACTAATCAAATAAGAAGAAATATATATCAAGAGGTATTAACTATGCC
CCCAGTAAATCGAGTTCAATTCAAGCTTTCAGCGGAACTTAACTAGTTTT
CAGTTTTGTACAATCGTACTATGATATAGTAAAGTTAAGAACTAGAAATA
AATGTAATATAACTATGTAAAAAAAAAAAAAAAAAAAAAAAAA

AT19083.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31845-RA 869 CG31845-RA 1..869 1..869 4330 99.8 Plus
CG9008-RB 2202 CG9008-RB 519..572 629..576 270 100 Minus
CG9008.a 1478 CG9008.a 520..572 629..577 265 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13775907..13776548 1..642 3210 100 Plus
chr2L 23010047 chr2L 13776603..13776836 635..868 1155 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13777195..13777836 1..642 3195 99.8 Plus
2L 23513712 2L 13777891..13778125 635..869 1160 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13777195..13777836 1..642 3195 99.8 Plus
2L 23513712 2L 13777891..13778125 635..869 1160 99.5 Plus
Blast to na_te.dros performed on 2019-03-16 04:51:22 has no hits.

AT19083.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:52:08 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13775907..13776547 1..641 93 -> Plus
chr2L 13776610..13776836 642..868 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:13:27 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG31845-RA 1..447 15..461 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:34 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG31845-RA 1..447 15..461 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:37:18 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG31845-RA 1..447 15..461 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:34:47 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG31845-RA 1..868 1..868 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:34 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG31845-RA 1..868 1..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:34 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 507..573 577..642 92   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:37:18 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG31845-RA 1..868 1..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:15 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
CG9008-RA 507..573 577..642 92   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:08 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13777195..13777835 1..641 99 -> Plus
2L 13777898..13778124 642..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:08 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13777195..13777835 1..641 99 -> Plus
2L 13777898..13778124 642..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:52:08 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13777195..13777835 1..641 99 -> Plus
2L 13777898..13778124 642..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:34 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13777195..13777835 1..641 99 -> Plus
arm_2L 13777898..13778124 642..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:34 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13777195..13777835 1..641 99 -> Plus
arm_2L 13777898..13778124 642..868 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:55 Download gff for AT19083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13777195..13777835 1..641 99 -> Plus
2L 13777898..13778124 642..868 100   Plus

AT19083.hyp Sequence

Translation from 2 to 460

> AT19083.hyp
GELDMEGGLWEAQNRSRQQQGEKKKTAINGGSSSWLQVQRLLVGELGHFP
AIPSLSLSQCFCVFAIRSLLVRFAGSTFGPARSRRVFCWVSYKNILPPNR
MAKAAPPAAPPAPAAAAAAAAQPVNRLPPGLVPLSAPSPPAMQTLRITFL
VA*
Sequence AT19083.hyp has no blast hits.

AT19083.pep Sequence

Translation from 2 to 460

> AT19083.pep
GGLDMEGGLWEAQNRSRQQQGEKKKTAINGGSSSWLQVQRLLVGELGHFP
AIPSLSLSQCFCVFAIRSLLVRFAGSTFGPARSRRVFCWVSYKNILPPNR
MAKAAPPAAPPAPAAAAAAAAQPVNRLPPGLVPLSAPSPPAMQTLRITFL
VA*

AT19083.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20034-PA 104 GF20034-PA 29..90 17..88 132 45.8 Plus