Clone AT19138 Report

Search the DGRC for AT19138

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:191
Well:38
Vector:pOTB7
Associated Gene/TranscriptCG30109-RB
Protein status:AT19138.pep: gold
Sequenced Size:1308

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30108 2003-01-01 Sim4 clustering to Release 3
CG30109 2003-01-01 Sim4 clustering to Release 3
CG30109 2004-03-05 Blastp of sequenced clone
CG30109 2008-04-29 Release 5.5 accounting
CG30109 2008-08-15 Release 5.9 accounting
CG30108 2008-08-15 Release 5.9 accounting
CG30109 2008-12-18 5.12 accounting
CG30108 2008-12-18 5.12 accounting

Clone Sequence Records

AT19138.complete Sequence

1308 bp (1308 high quality bases) assembled on 2004-03-05

GenBank Submission: BT012332

> AT19138.complete
GTTCGACGTACCTTTGTCACATTTTTTCGGAACTCTATAATAGGCATTAT
AAATTAAAACCAAAATATACCTAGTAAACAAATGAGCAGCGTTGGCGAGG
ATTGCAACGAGCTGAAGCAGCAGTACGATGCCTGTTTCAACAGCTGGTTT
TCTGAACGCTTCCTAAAAGGTCAAATGGATGACTCAGCGTGTGCTCCGAT
TTTCCGGGTTTATCAGGAATGCGTCAAGGTGAGCTAATCGGCTCCCTAAC
CACGTATGGTTTGACCAACCTGTAATCCCCAGCGCGCTATTAAGGAGAAG
AAGATCGATTTGCAAGAGATAGATCCGATCTTCGAAACCGGGCTTGAGGA
GAATAATGCGAATAGATCTGATGCAAAACAGCAGCAGGCGGGCGAAAGCT
GACCCCGTAAGCTGCTCCATATAGCCATCCTAATCCTCGCCAGCGTTAAT
TGGTGGCTGCACGCGCTACAAAATACTTGTAAAGAGAAACATTTCGTAGT
ACTTTGACTGTTAATAGTATCATCATGAAACATGGACAACTGATTTCGTT
ATAACCAGAGTGCCTTTATTAAAATAAATTAGATGTTCTTAAAGAATTGA
AAATTCAAATTTCGATAGCACGTTCAGTTTCAACGAAACGTACATCGATA
TGCTGTGTCCCACATCTCTGATAGCTTATCTGTAGTATGACCCTCACACA
AACCATTCTCACATTTTTTTCGACTTATTATTCAATAGAGAAATTATAAC
TGAAACTCAAAGAGCTTCACTCCACAAATGAACAGCATTGGCGAGGATTG
CAATGAGCTAAAGAAGCAGTACGACGCCTGCTTCAACAGCTGGTTCTCGG
AAGGCTTCCTTAAGGGCCAGACGGATGACTCGGGCTGCGCGCCGATTTTC
CGGGTCTATCAGGAGTGCGTCAAGCGCGCCATGAGGGAGCAAAAGATTGA
GCTGCGGGAGGTCGGATCTGAGTACTGCACCGGCTCGGAGTACGACAATG
CGAGTAGTTCCGGCGGAAAGACGCAACCCAAGACAAAAAGTTGACCCGTT
ACGCAGCTCCAGCATCCTGGCAACGGCATTGAATCCACAGTGGGCCAGAA
CCCGGGACACAATGACCTCACCGGTAATCAGCGCCGACACCAGAGTGGAG
GAACAGCCTAGGTCTACCAAGTACCAGAAGCAGCTTTGGTTTAGTTCCAT
GACTCGTATCCTTATGTAAATTATTTAGTGAATGTTTTATAAATAAGTTC
AAGTAGCGAACTATAAAAAATGTTATATTCAGACAGAAAAAAAAAAAAAA
AAAAAAAA

AT19138.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30109-RA 1335 CG30109-RA 23..1310 1..1288 6440 100 Plus
CG30108-RB 547 CG30108-RB 232..547 281..596 1580 100 Plus
CG30108-RB 547 CG30108-RB 6..233 1..228 1140 100 Plus
CG30108-RB 547 CG30108-RB 83..256 774..947 465 84.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13556484..13557410 1..924 4420 98.7 Plus
chr2R 21145070 chr2R 13557466..13557829 923..1286 1820 100 Plus
chr2R 21145070 chr2R 13556564..13556714 774..924 440 86.1 Plus
chr2R 21145070 chr2R 13557260..13557416 78..234 440 85.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17669405..17670328 1..924 4620 100 Plus
2R 25286936 2R 17670385..17670750 923..1288 1830 100 Plus
2R 25286936 2R 17670178..17670334 78..234 440 85.4 Plus
2R 25286936 2R 17669482..17669632 774..924 425 85.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17670604..17671527 1..924 4620 100 Plus
2R 25260384 2R 17671584..17671949 923..1288 1830 100 Plus
2R 25260384 2R 17671377..17671533 78..234 440 85.3 Plus
Blast to na_te.dros performed 2019-03-16 18:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 4814..4916 1054..1153 119 62.5 Plus

AT19138.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:47:49 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13556484..13557410 1..924 98 -> Plus
chr2R 13557468..13557829 925..1286 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:13:32 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RA 1..267 778..1044 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:39:30 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RA 1..267 778..1044 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:26:34 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RB 1..267 778..1044 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:23:13 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RA 1..267 778..1044 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:37 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RB 1..267 778..1044 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:47:51 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30108-RB 6..231 1..226 100 == Plus
CG30108-RB 232..547 281..596 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:39:30 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RA 1..1286 1..1286 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:34 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RB 1..609 678..1286 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:23:13 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30108-RB 6..231 1..226 100 == Plus
CG30108-RB 232..547 281..596 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:37 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
CG30109-RB 1..609 678..1286 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:49 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17669405..17670328 1..924 100 -> Plus
2R 17670387..17670748 925..1286 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:49 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17669405..17670328 1..924 100 -> Plus
2R 17670387..17670748 925..1286 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:47:49 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17669405..17670328 1..924 100 -> Plus
2R 17670387..17670748 925..1286 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:34 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13556910..13557833 1..924 100 -> Plus
arm_2R 13557892..13558253 925..1286 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:42 Download gff for AT19138.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17670604..17671527 1..924 100 -> Plus
2R 17671586..17671947 925..1286 100   Plus

AT19138.hyp Sequence

Translation from 777 to 1043

> AT19138.hyp
MNSIGEDCNELKKQYDACFNSWFSEGFLKGQTDDSGCAPIFRVYQECVKR
AMREQKIELREVGSEYCTGSEYDNASSSGGKTQPKTKS*

AT19138.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG30109-PB 88 CG30109-PB 1..88 1..88 476 100 Plus
CG30108-PB 88 CG30108-PB 1..88 1..88 318 67 Plus

AT19138.pep Sequence

Translation from 777 to 1043

> AT19138.pep
MNSIGEDCNELKKQYDACFNSWFSEGFLKGQTDDSGCAPIFRVYQECVKR
AMREQKIELREVGSEYCTGSEYDNASSSGGKTQPKTKS*

AT19138.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11660-PA 87 GF11660-PA 1..83 1..83 347 88 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21808-PA 88 GG21808-PA 1..88 1..88 453 96.6 Plus
Dere\GG21806-PA 87 GG21806-PA 1..83 1..83 327 71.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20078-PA 94 GH20078-PA 1..80 1..79 336 78.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30109-PB 88 CG30109-PB 1..88 1..88 476 100 Plus
CG30108-PB 88 CG30108-PB 1..88 1..88 318 67 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18793-PA 92 GI18793-PA 1..82 1..82 354 78 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16788-PA 86 GL16788-PA 1..73 1..73 341 83.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15656-PA 86 GA15656-PA 1..73 1..73 345 84.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21810-PA 88 GM21810-PA 1..88 1..88 458 98.9 Plus
Dsec\GM21809-PA 88 GM21809-PA 1..88 1..88 342 71.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11301-PA 88 GD11301-PA 1..88 1..88 463 98.9 Plus
Dsim\GD11300-PA 88 GD11300-PA 1..88 1..88 332 70.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21823-PA 90 GJ21823-PA 1..78 1..78 350 79.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15920-PA 88 GK15920-PA 1..73 1..73 338 83.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11884-PA 88 GE11884-PA 1..88 1..88 450 96.6 Plus
Dyak\GE11883-PA 87 GE11883-PA 1..83 1..83 339 74.7 Plus