BDGP Sequence Production Resources |
Search the DGRC for AT19180
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 191 |
Well: | 80 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG11291-RA |
Protein status: | AT19180.pep: validated not full length |
Preliminary Size: | 747 |
Sequenced Size: | 1269 |
Gene | Date | Evidence |
---|---|---|
CG11291 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11291 | 2002-02-22 | Blastp of sequenced clone |
CG11291 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11291 | 2008-04-29 | Release 5.5 accounting |
CG11291 | 2008-08-15 | Release 5.9 accounting |
CG11291 | 2008-12-18 | 5.12 accounting |
1269 bp (1269 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089370
> AT19180.complete TTAAGGCGCAGTCTAAGCCATCTGGACAAGCTGCCGAAGGCAAAGGTGGC CGAATGGCTGGCCGGGATCGACACCATTATTTGCAGCACGGATGGGGTGC TGTGGCAGGAGAATACCCCCATTGAGGGCTCTGTAGAGGCATTCAATGCC ATAATTTCAAAGGGAAAGCGATGTCTCATAGCCACCAACGAGTGCTGCCT AACAAACAAGGATCTGTTCCAGAAGGCCAAGTGCCTGGGCTTCAATGTCA AGGAGCAGGACATTTTCAGCTCGTCGGGTGCCATTGCGAGTTACCTTAGC GACCGGAAGTTTAAGAAGAAAATCCTCGTTTTGGGTGGTGACGGTATCCG CAAAGATCTGAAAGAGGCCGGATTCTGTTCCGTGGTAAACGATCTGCAGC CAAATGACCAGAAAAAAATCGACTTCGTCAGGAGCTTAGTTCTCGATCCG GATGTGGGAGCTGTTTTGGTGGCCAGAGACGACAACATGATAGCGAACGA GTTGCTTGTGGCCTGCAACTATCTTCAAAATCCCAAAGTCTTGTTCCTTA CCACTTGCATTGATGGATTCCAGCCATTTGGGAAAAAGAGGATCCCAGAT GCCGGATCTCTGGCCTCTGCCATCGAGATAATTGTACAACGCAAGCCTAT CGTTTTGGGCAAACCGAATCAGCGGATTTTGGGCAAGTTGATGAAGTCTG GCGAAATAAAGCCCGAAAAGACGCTTGTCATTGGAAACTCGCTTAAATCA GACATTTTATTTGCAAGTATATGTGGTTTCCAATCATTATTGGTGGGCTG CGATAACGGAGCGATCGAAAAAGCCGAGAAAATTAAAAAAGAGGGAGATG AGAAGAAAATGAAACTTGTTCCAGATGCTTTTCTCTCCGGTCTTGCTTCT TTTGGGGAGTATTTATGCATCTAGGTGATGTCGGGCAAGAAAAGCGATTT CCATATCCAAAAAACATACCCAGCTGACCAAAAAGTAATTTAGATCATAT TCAAAATTCAAACTAAGCCGCTCAAAAGCTGAACAGCTGTTTTGTTTCTG AGCACTCCTGTGTGCTAAATGATTTCGGTATTTTGGCTTTTAGCACAAGT CGCGAGTCAGTGCTACCAGTATATTTGTAAATTTTTAGTTTTAAAATTTG TAATCTAAAATAGTAAAGCAAATTGCCAGTTTTCTGTTGAAACTAATAGT TTTGCATTATACACTGAAACGAACATTTTCAATAAATAACTTTTAGGACA AAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18098035..18098775 | 1..741 | 3660 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 18098829..18099292 | 741..1204 | 2200 | 98.3 | Plus |
chr3R | 27901430 | chr3R | 15665901..15665943 | 1207..1249 | 215 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22211444..22212184 | 1..741 | 3705 | 100 | Plus |
2R | 25286936 | 2R | 22212238..22212704 | 741..1207 | 2335 | 100 | Plus |
3R | 32079331 | 3R | 19841998..19842043 | 1207..1252 | 230 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22212643..22213383 | 1..741 | 3705 | 100 | Plus |
2R | 25260384 | 2R | 22213437..22213903 | 741..1207 | 2335 | 100 | Plus |
3R | 31820162 | 3R | 19582829..19582874 | 1207..1252 | 230 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 716..779 | 922..860 | 119 | 67.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18098035..18098774 | 1..740 | 99 | -> | Plus |
chr2R | 18098829..18099303 | 741..1221 | 96 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..927 | 1..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..927 | 1..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..927 | 1..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..927 | 1..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..927 | 1..924 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..1210 | 1..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..1210 | 1..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 74..1280 | 1..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 4..1210 | 1..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11291-RA | 74..1280 | 1..1207 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22211444..22212183 | 1..740 | 100 | -> | Plus |
2R | 22212238..22212712 | 741..1220 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22211444..22212183 | 1..740 | 100 | -> | Plus |
2R | 22212238..22212712 | 741..1220 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22211444..22212183 | 1..740 | 100 | -> | Plus |
2R | 22212238..22212712 | 741..1220 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18098949..18099688 | 1..740 | 100 | -> | Plus |
arm_2R | 18099743..18100217 | 741..1220 | 98 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22212643..22213382 | 1..740 | 100 | -> | Plus |
2R | 22213437..22213911 | 741..1220 | 98 | -> | Plus |
Translation from 0 to 923
> AT19180.pep LRRSLSHLDKLPKAKVAEWLAGIDTIICSTDGVLWQENTPIEGSVEAFNA IISKGKRCLIATNECCLTNKDLFQKAKCLGFNVKEQDIFSSSGAIASYLS DRKFKKKILVLGGDGIRKDLKEAGFCSVVNDLQPNDQKKIDFVRSLVLDP DVGAVLVARDDNMIANELLVACNYLQNPKVLFLTTCIDGFQPFGKKRIPD AGSLASAIEIIVQRKPIVLGKPNQRILGKLMKSGEIKPEKTLVIGNSLKS DILFASICGFQSLLVGCDNGAIEKAEKIKKEGDEKKMKLVPDAFLSGLAS FGEYLCI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12617-PA | 318 | GF12617-PA | 2..305 | 1..306 | 755 | 47.4 | Plus |
Dana\GF10231-PA | 308 | GF10231-PA | 2..308 | 1..306 | 536 | 36.4 | Plus |
Dana\GF25232-PA | 316 | GF25232-PA | 3..301 | 2..299 | 515 | 36.8 | Plus |
Dana\GF10230-PA | 309 | GF10230-PA | 5..272 | 1..266 | 459 | 37.6 | Plus |
Dana\GF25233-PA | 315 | GF25233-PA | 9..315 | 8..305 | 407 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22174-PA | 314 | GG22174-PA | 2..308 | 1..307 | 1417 | 88.6 | Plus |
Dere\GG14490-PA | 307 | GG14490-PA | 2..307 | 1..306 | 622 | 38.4 | Plus |
Dere\GG15774-PA | 315 | GG15774-PA | 3..301 | 2..299 | 515 | 36.5 | Plus |
Dere\GG14489-PA | 320 | GG14489-PA | 19..315 | 11..305 | 480 | 35.4 | Plus |
Dere\GG15776-PA | 315 | GG15776-PA | 3..309 | 2..299 | 411 | 35 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14576-PA | 309 | GH14576-PA | 2..309 | 1..306 | 610 | 39 | Plus |
Dgri\GH14574-PA | 319 | GH14574-PA | 8..314 | 1..305 | 515 | 36.9 | Plus |
Dgri\GH23184-PA | 319 | GH23184-PA | 8..314 | 1..305 | 508 | 36.5 | Plus |
Dgri\GH14463-PA | 316 | GH14463-PA | 3..301 | 2..299 | 475 | 34.3 | Plus |
Dgri\GH14464-PA | 314 | GH14464-PA | 2..314 | 1..305 | 324 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11291-PA | 308 | CG11291-PA | 2..308 | 1..307 | 1570 | 100 | Plus |
CG32488-PB | 307 | CG32488-PB | 3..307 | 2..306 | 599 | 39.2 | Plus |
CG32488-PA | 307 | CG32488-PA | 3..307 | 2..306 | 599 | 39.2 | Plus |
CG5567-PA | 330 | CG5567-PA | 18..315 | 2..298 | 517 | 37.2 | Plus |
CG32487-PA | 320 | CG32487-PA | 19..315 | 11..305 | 461 | 35.9 | Plus |
CG5577-PB | 315 | CG5577-PB | 9..308 | 8..298 | 376 | 34 | Plus |
CG5577-PA | 315 | CG5577-PA | 9..308 | 8..298 | 376 | 34 | Plus |
CG10352-PB | 315 | CG10352-PB | 3..280 | 4..278 | 285 | 30.2 | Plus |
CG15739-PB | 308 | CG15739-PB | 6..300 | 7..305 | 273 | 25.7 | Plus |
CG15739-PA | 308 | CG15739-PA | 6..300 | 7..305 | 273 | 25.7 | Plus |
CG2680-PB | 305 | CG2680-PB | 6..300 | 7..305 | 184 | 26.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13900-PA | 307 | GI13900-PA | 2..307 | 1..305 | 641 | 40.8 | Plus |
Dmoj\GI13899-PA | 314 | GI13899-PA | 3..309 | 1..305 | 563 | 38.8 | Plus |
Dmoj\GI13608-PA | 316 | GI13608-PA | 3..301 | 2..299 | 462 | 33.9 | Plus |
Dmoj\GI13609-PA | 310 | GI13609-PA | 10..310 | 8..305 | 389 | 33.9 | Plus |
Dmoj\GI10972-PA | 323 | GI10972-PA | 20..285 | 7..267 | 258 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17529-PA | 336 | GL17529-PA | 2..308 | 1..306 | 751 | 49.2 | Plus |
Dper\GL13742-PA | 308 | GL13742-PA | 2..308 | 1..306 | 627 | 40.2 | Plus |
Dper\GL16692-PA | 317 | GL16692-PA | 2..306 | 1..304 | 608 | 39.5 | Plus |
Dper\GL18198-PA | 305 | GL18198-PA | 2..305 | 1..306 | 605 | 39.9 | Plus |
Dper\GL22743-PA | 314 | GL22743-PA | 5..305 | 2..301 | 486 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24194-PA | 336 | GA24194-PA | 2..308 | 1..306 | 742 | 48.9 | Plus |
Dpse\GA16942-PA | 308 | GA16942-PA | 2..308 | 1..306 | 630 | 40.2 | Plus |
Dpse\GA18976-PA | 314 | GA18976-PA | 5..305 | 2..301 | 486 | 36.1 | Plus |
Dpse\GA16941-PA | 321 | GA16941-PA | 25..310 | 16..299 | 447 | 34.3 | Plus |
Dpse\GA18982-PA | 313 | GA18982-PA | 12..281 | 11..266 | 357 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14093-PA | 307 | GM14093-PA | 2..307 | 1..306 | 619 | 38.4 | Plus |
Dsec\GM24299-PA | 315 | GM24299-PA | 3..301 | 2..299 | 518 | 36.8 | Plus |
Dsec\GM14092-PA | 320 | GM14092-PA | 9..315 | 1..305 | 467 | 34.7 | Plus |
Dsec\GM24300-PA | 315 | GM24300-PA | 9..309 | 8..299 | 384 | 33.8 | Plus |
Dsec\GM15895-PA | 423 | GM15895-PA | 364..423 | 248..307 | 291 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11653-PA | 308 | GD11653-PA | 2..308 | 1..307 | 1529 | 96.4 | Plus |
Dsim\GD13365-PA | 307 | GD13365-PA | 2..307 | 1..306 | 620 | 38.8 | Plus |
Dsim\GD12368-PA | 315 | GD12368-PA | 3..301 | 2..299 | 518 | 36.8 | Plus |
Dsim\GD13364-PA | 320 | GD13364-PA | 9..315 | 1..305 | 467 | 34.7 | Plus |
Dsim\GD12369-PA | 315 | GD12369-PA | 9..309 | 8..299 | 383 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11757-PA | 308 | GJ11757-PA | 2..308 | 1..306 | 650 | 42.1 | Plus |
Dvir\GJ11756-PA | 321 | GJ11756-PA | 10..316 | 1..305 | 577 | 39.7 | Plus |
Dvir\GJ13944-PA | 316 | GJ13944-PA | 3..301 | 2..299 | 448 | 33.3 | Plus |
Dvir\GJ13945-PA | 310 | GJ13945-PA | 10..310 | 8..305 | 381 | 32.9 | Plus |
Dvir\GJ18530-PA | 311 | GJ18530-PA | 4..303 | 3..306 | 278 | 26.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20804-PA | 298 | GK20804-PA | 2..296 | 1..294 | 667 | 42 | Plus |
Dwil\GK17623-PA | 311 | GK17623-PA | 2..311 | 1..306 | 648 | 40.6 | Plus |
Dwil\GK16579-PA | 323 | GK16579-PA | 20..318 | 11..305 | 474 | 35 | Plus |
Dwil\GK21181-PA | 318 | GK21181-PA | 5..303 | 2..299 | 462 | 33.1 | Plus |
Dwil\GK10443-PA | 313 | GK10443-PA | 2..313 | 1..305 | 352 | 30.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14167-PA | 311 | GE14167-PA | 2..306 | 1..305 | 1451 | 90.8 | Plus |
Dyak\GE21679-PA | 307 | GE21679-PA | 2..307 | 1..306 | 631 | 39.4 | Plus |
Dyak\GE22109-PA | 315 | GE22109-PA | 3..301 | 2..299 | 512 | 36.1 | Plus |
Dyak\GE21678-PA | 320 | GE21678-PA | 19..315 | 11..305 | 474 | 35.4 | Plus |
Dyak\GE22110-PA | 315 | GE22110-PA | 9..308 | 8..298 | 389 | 33.7 | Plus |
Translation from 1 to 923
> AT19180.hyp LRRSLSHLDKLPKAKVAEWLAGIDTIICSTDGVLWQENTPIEGSVEAFNA IISKGKRCLIATNECCLTNKDLFQKAKCLGFNVKEQDIFSSSGAIASYLS DRKFKKKILVLGGDGIRKDLKEAGFCSVVNDLQPNDQKKIDFVRSLVLDP DVGAVLVARDDNMIANELLVACNYLQNPKVLFLTTCIDGFQPFGKKRIPD AGSLASAIEIIVQRKPIVLGKPNQRILGKLMKSGEIKPEKTLVIGNSLKS DILFASICGFQSLLVGCDNGAIEKAEKIKKEGDEKKMKLVPDAFLSGLAS FGEYLCI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11291-PA | 308 | CG11291-PA | 2..308 | 1..307 | 1570 | 100 | Plus |
CG32488-PB | 307 | CG32488-PB | 3..307 | 2..306 | 599 | 39.2 | Plus |
CG32488-PA | 307 | CG32488-PA | 3..307 | 2..306 | 599 | 39.2 | Plus |
CG5567-PA | 330 | CG5567-PA | 18..315 | 2..298 | 517 | 37.2 | Plus |
CG32487-PA | 320 | CG32487-PA | 19..315 | 11..305 | 461 | 35.9 | Plus |