Clone AT19250 Report

Search the DGRC for AT19250

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:192
Well:50
Vector:pOTB7
Associated Gene/TranscriptCG15435-RA
Protein status:AT19250.pep: gold
Preliminary Size:1669
Sequenced Size:1871

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15435 2002-01-01 Sim4 clustering to Release 2
CG15435 2002-03-28 Blastp of sequenced clone
CG15435 2003-01-01 Sim4 clustering to Release 3
CG15435 2008-04-29 Release 5.5 accounting
CG15435 2008-08-15 Release 5.9 accounting
CG15435 2008-12-18 5.12 accounting

Clone Sequence Records

AT19250.complete Sequence

1871 bp (1871 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094657

> AT19250.complete
AGCTAACTGGACATCACTGCCGCAAGTGGGTGGACTGTTGAGTTTTGAAC
CTTCAGTGGTAGGGCAACACTCGCCGGAGTGTTGAAAATTGTCATTGTTT
ATTTTTTCCGGCATAAGCATTAAGTTTAAGGTTTGCCATAAGTATGACGT
CGTGGGGCAATATCTGCCGCATCTGCAGCAGCCCCGCAGACTACGAGATA
TTCGCCAAGATTCCCACGTATTTGCACGGCTCCACAAACGAGTTTCTCAA
CTGGCAAAAGCCCATAAACGTTCTGCTGGAGGAGACGACGGGCCTGAAAA
ACTCCACGGACGACGGACTGCCACGCAACATATGTGCGCCGTGCATCTCC
TATCTCAAGCATGCCGTCACATTCCGGGAACAGTGCATCAAGAACGCGCT
GAGTCTCAAGCTGGCGGAGCTCTACCAGCAGAAGAGGGTCAACGTTTCGG
ATGCGAACAAGATGGACAAGGAGAGCGCCCTCTTCACGGCGGAGGATCTG
AATTATGTGGAGCAGAGGCCAGTGCATAATCTTCTGCTAAACAACAGCGC
CAACAAACTGGAGTCATCCAAGGACAAGGTACACAAGCGACTGCTCAATC
AGACGACTACCCAGCTAGACGGCAATGCTGAGCAGAAGATCCAGTACTTA
AACGTGCTGTTCAACAAGCAGCAGCCTCACAACAGCATGCCCAGGCAACC
GCGGGATGGCGAACTGCCATCGAGCAGTGGCCAAAATGACGACGAAGATG
ACGACTATGCGGTGGCCAGTTCCAGCGACGACAACGAGGAGGCGGCCCTG
CTGCGCAAGCACAAGAACTGCTATAACTACACCGAGACCAACTTCGAGGA
GGACGATCCCATGGAGCAGGATCAGCTGCAGCTGCGCGACATCAAAGTGA
ACATACCGGAGCCCATGTGGAAGGAGCGCAAGTGTCCGGCATGCTCCAAA
CGCTTCATGTTCGAGGACTCGCATCAGTCGCATCTGGACAACTGCGTCGA
ATACCAGTTCGTCACGTTTGTTACCGAGGTGACCAAGTTGCTCGAGATTA
GGCGACAGAAAATGGTCTCGCCGCACGAGTTCATCCGCCGCATGATATTC
GCTCTGCACAAAACTTGCGCCTGGCTGCAGGAACATTCCATAGACTCGCT
TCTGGCCGAGAAGCTCAATCAGGTGAAGGTGTCCAACGGTGAGAAGATAG
CTGAGCCGCCAATTCCCATAGATATACCCGATCCCCGGCCGGTGCAGGAA
CCATCTCTATTCGACTGTGCCAGCGGAACGACGACTCCGATCACGGAGGA
GAACAACGTGCTGTACGCCATTGAGCGCTCTGAAAGTTGCCATTCCCAGG
GCACGCCGACGGTGAAAAAACCCATTCCCATTCGCGGAAAGGCGGCGCTG
GGAATCGGGCTGGACAAGCACAGGGAGAGAGCCACGTTCCTCGAGAAGCT
GCAACGGGCCGCTGTCTCTCCTGGCACAGTTTCGCAGGGTCCAGCGCCCG
TTTTCTCAGCCCGCTGCGGGCAGTGCAATTTAGAATTTGACTCAGTCTCC
GAACTGGAGGTGCACAACCACAATGCCCACAGGGGCAATGAACTGAACGC
CGACGACGAAGCCAAAAGGCGTCAAATAATCGCCCTCTTCGAGGATGATA
TTTAGGTTTTACAAAGTCCTGTTTTTCATGCCGGTGGCTCAATCAAACTA
GTAATCATGTTGACCACTTTGCATCTGTGTTTTTGTCGTATTGTATTTAT
TTATTATTTATTTATTTTATTCTGTTTCCATTAGTGATTTAGTTTTGCTT
AGCGGCAATCCATGTTCATTTACAATACATTCTCGAGTACTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

AT19250.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15435-RA 1934 CG15435-RA 54..1899 1..1846 9230 100 Plus
CG15443-RA 1747 CG15443-RA 1628..1747 1846..1727 600 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4459339..4460881 300..1842 7670 99.8 Plus
chr2L 23010047 chr2L 4458970..4459268 1..299 1495 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4460204..4461750 300..1846 7735 100 Plus
2L 23513712 2L 4459835..4460133 1..299 1495 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4460204..4461750 300..1846 7735 100 Plus
2L 23513712 2L 4459835..4460133 1..299 1495 100 Plus
Blast to na_te.dros performed 2019-03-16 04:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 5050..5140 1817..1728 119 63.4 Minus

AT19250.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:55:34 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4458970..4459268 1..299 100 -> Plus
chr2L 4459339..4460881 300..1842 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:13:49 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1512 144..1655 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:24:00 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1512 144..1655 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:44:06 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1512 144..1655 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:06 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1512 144..1655 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:52:49 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1512 144..1655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:48 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1842 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:24:00 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1842 1..1842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:06 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1807 36..1842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:06 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RA 1..1842 1..1842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:52:49 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
CG15435-RB 107..1948 1..1842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:34 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4459835..4460133 1..299 100 -> Plus
2L 4460204..4461746 300..1842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:34 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4459835..4460133 1..299 100 -> Plus
2L 4460204..4461746 300..1842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:55:34 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4459835..4460133 1..299 100 -> Plus
2L 4460204..4461746 300..1842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:06 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4459835..4460133 1..299 100 -> Plus
arm_2L 4460204..4461746 300..1842 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:33:03 Download gff for AT19250.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4459835..4460133 1..299 100 -> Plus
2L 4460204..4461746 300..1842 100   Plus

AT19250.pep Sequence

Translation from 143 to 1654

> AT19250.pep
MTSWGNICRICSSPADYEIFAKIPTYLHGSTNEFLNWQKPINVLLEETTG
LKNSTDDGLPRNICAPCISYLKHAVTFREQCIKNALSLKLAELYQQKRVN
VSDANKMDKESALFTAEDLNYVEQRPVHNLLLNNSANKLESSKDKVHKRL
LNQTTTQLDGNAEQKIQYLNVLFNKQQPHNSMPRQPRDGELPSSSGQNDD
EDDDYAVASSSDDNEEAALLRKHKNCYNYTETNFEEDDPMEQDQLQLRDI
KVNIPEPMWKERKCPACSKRFMFEDSHQSHLDNCVEYQFVTFVTEVTKLL
EIRRQKMVSPHEFIRRMIFALHKTCAWLQEHSIDSLLAEKLNQVKVSNGE
KIAEPPIPIDIPDPRPVQEPSLFDCASGTTTPITEENNVLYAIERSESCH
SQGTPTVKKPIPIRGKAALGIGLDKHRERATFLEKLQRAAVSPGTVSQGP
APVFSARCGQCNLEFDSVSELEVHNHNAHRGNELNADDEAKRRQIIALFE
DDI*

AT19250.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21255-PA 487 GF21255-PA 1..487 1..503 1909 73.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25007-PA 502 GG25007-PA 1..502 1..503 2487 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13745-PA 540 GH13745-PA 1..540 1..503 1679 64.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15435-PB 503 CG15435-PB 1..503 1..503 2658 100 Plus
CG15435-PA 503 CG15435-PA 1..503 1..503 2658 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17888-PA 525 GI17888-PA 1..525 1..503 1635 65.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15215-PA 576 GL15215-PA 1..576 1..503 1881 65.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13725-PA 575 GA13725-PA 1..575 1..503 1883 65.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18476-PA 503 GM18476-PA 1..503 1..503 2643 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23290-PA 503 GD23290-PA 1..503 1..503 2656 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17390-PA 528 GJ17390-PA 1..528 1..503 1722 67.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23750-PA 518 GK23750-PA 1..518 1..503 1537 62.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18293-PA 502 GE18293-PA 1..502 1..503 2500 92.2 Plus

AT19250.hyp Sequence

Translation from 143 to 1654

> AT19250.hyp
MTSWGNICRICSSPADYEIFAKIPTYLHGSTNEFLNWQKPINVLLEETTG
LKNSTDDGLPRNICAPCISYLKHAVTFREQCIKNALSLKLAELYQQKRVN
VSDANKMDKESALFTAEDLNYVEQRPVHNLLLNNSANKLESSKDKVHKRL
LNQTTTQLDGNAEQKIQYLNVLFNKQQPHNSMPRQPRDGELPSSSGQNDD
EDDDYAVASSSDDNEEAALLRKHKNCYNYTETNFEEDDPMEQDQLQLRDI
KVNIPEPMWKERKCPACSKRFMFEDSHQSHLDNCVEYQFVTFVTEVTKLL
EIRRQKMVSPHEFIRRMIFALHKTCAWLQEHSIDSLLAEKLNQVKVSNGE
KIAEPPIPIDIPDPRPVQEPSLFDCASGTTTPITEENNVLYAIERSESCH
SQGTPTVKKPIPIRGKAALGIGLDKHRERATFLEKLQRAAVSPGTVSQGP
APVFSARCGQCNLEFDSVSELEVHNHNAHRGNELNADDEAKRRQIIALFE
DDI*

AT19250.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15435-PB 503 CG15435-PB 1..503 1..503 2658 100 Plus
CG15435-PA 503 CG15435-PA 1..503 1..503 2658 100 Plus