Clone AT19257 Report

Search the DGRC for AT19257

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:192
Well:57
Vector:pOTB7
Associated Gene/TranscriptCG32181-RB
Protein status:AT19257.pep: gold
Sequenced Size:2246

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7446 2002-01-01 Sim4 clustering to Release 2
CG32181 2002-05-17 Blastp of sequenced clone
CG32181 2003-01-01 Sim4 clustering to Release 3
CG32181 2008-04-29 Release 5.5 accounting
CG32181 2008-08-15 Release 5.9 accounting
CG32181 2008-12-18 5.12 accounting

Clone Sequence Records

AT19257.complete Sequence

2246 bp (2246 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118698

> AT19257.complete
CCTCGTGCCGATACTATTTTGCAACACTTCTGGAACCAAATGAAGTTATT
ATAAATATACCAACAGTTACACACATATTTTTGGTCATCGAATTGATTTT
AAATCATCAAAACTGTACTCCGATTTTTTAGATTGTTTGAATTCTGTTCT
GCTGCCCGATGAGCTGTATTTGGCATTCAATCGGTTTTTGGGAAACCAGA
AGGATCTGAACGAAGCAAGTTCAACCCGAAATCCCTGCCAGAGGTTCTCT
CAAGGAACGGATCCCATTAGCGACGACGACAGCTTCGATCCCTGTCCTAC
CGTTAGTAGGTTCTCAATGCCACGCAACCCTGTTGAACCATTTCAAGAAC
CCCTATACCAACATACCCTCGATGGCAGCAGACAGAAACATTCGTCGGTG
ACACAGGATGTGCTCCCGCCCTCTTATAACAAGGACGATGAATATCAATG
TTGCAACATGCCGGAGTGCCCGAATAATAGCATACCCCTTCAGATTCCGA
AAAATTCTTTACCTCGCTTTCAACCTCTAGTCAACGTATCTCAACATTCC
CGATCCCATAGCTTCCCCAGGCAAAATTACAGAAATAATAAGACTAGTCA
TCATAATTCCACCCACAACCACTCGGACAAAAGGATCAAACCGCAAACAC
CGTGCGAGTTAAAAGTACCGAGCGGAAACCGTTGTCCCACCGATCAGAGC
AGTAATCATGATACGGCTACTGGCTGCAGAAATAACACCTCAATCGATTG
GAATAATAGCTCTCAAGTTGGCATGAACTATGGCGAGTTTCAAAGACGCC
AATTGCTGTTGCAAAAAATTCAACAGCAGCAATATCAGCAACAGCAAGCT
AGACAGCAGAATCAAGCGAATTTATCTTGGTTGGAAGATGAAGATCCCAT
TGAATTTGCACCTGATCTCAATAGCACGAGAATAAATCAAGATGATCGTC
ACCAGCAATCCCGCCTGCAACCAAACTCAATTTGTCAGAAATGCAACTCT
CGCCAGCAACAAAGTGCGTCACGATCAATTCTTGAGTGCGATCAAACACC
AGAAATGGTGCGTAATCAAACGAAGTACGAAACCAAAACTAATGAAACAA
GTTATCTTCAGCCACCAGAGACTTTGCGAAACGCTAGATGTAAACCACAG
GCGAACCAGAGTCTCAGAAACCAGTCGCAAGATATTTGCCAAGATGTCTC
TATGAATCAGATATCCAATTGTGAGCAATCTATGAGTAAGAATACAAAAT
ATTACTCGGATCCCCCCGAAAGTCAATATAGTTGCTGTAGTCGTGGCTCT
ACTGCCTGTGACAGAAGTATGAAAGATAGTCAAAACTATGCCTGTTGTGC
AAACACGTCTGCCTCCGGAAATCAAAGACTTTTGGAAATGTCTCAAGTAA
TGTCAGGGAGGTCGTGCTCGACTCCAACTTCGCTGGAGAAAACTAAGCGA
AATTCTTCCTTGCGAGGACGTTCAATGCGAGTGCCCGTTCAAACACCTGA
GGATCGTTTGGTTGAGCGCATTCAGAACGAATATCACGAAACCTTTGTAA
ATGATCCCTATTGTCCTGGCGTTATACAAGCCAGTCTCGATGGAAGTGAG
AATTTCAACGAGTACTCCAGGGAGATTGCTTTTGCAGGACCCATTCCGGA
GAAACCATATCCGGTGGATCCTGTCACCATGATAGAAGCAATCAAGTTGC
GCATCGACCACGAGCGCAAAGAGATACGCAAAGAAAAGAATCGAAGTGAG
GAGGGAAATAGAGATTTGAGAAATCAATCAAAAGAGCGCAGGTCAAGGCG
TCCACGGACAACAATCAGTGAGGAAATTGATTCTCATTTTAGTCCGAAAA
TTAAGTCGGAAGTCAATAGAAGTGTGGCTGCCTTTCTGAAAGCCGAGACC
GAGTATCGTACCAGTTTCGAAAGAGATTCCGCCTTTGATGCGCATATCAA
TCGCTTTGAAACTAATCTCTTTGATGAAAGAATTAAAGTCCATTCCTATT
CAGCCACAACAACGCCCACTCATCGGTAAATTTAAACGGATTTTCAATCG
GAAAAATGCATTTATGCGTCTCACTGGACTTCATTTTGCTCGGGACACAA
TATTTTTAATGAATGTAGTGCGTTTCGTATCAACAGAGCCAAAATATGAG
TGATTTATTATTTTTTGCAACTGAACCATTCTTAATACCAACAGAAGTCA
CTACAATAAAGTTTCAAAAAAGTCCCCTAAAAAAAAAAAAAAAAAA

AT19257.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32181-RB 2527 CG32181-RB 157..2375 11..2229 11095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17751669..17752097 1497..1925 2145 100 Plus
chr3L 24539361 chr3L 17752232..17752535 1925..2228 1520 100 Plus
chr3L 24539361 chr3L 17749599..17749872 139..412 1370 100 Plus
chr3L 24539361 chr3L 17750351..17750607 652..908 1285 100 Plus
chr3L 24539361 chr3L 17751226..17751477 1172..1423 1260 100 Plus
chr3L 24539361 chr3L 17750032..17750205 446..619 870 100 Plus
chr3L 24539361 chr3L 17749386..17749514 11..139 645 100 Plus
chr3L 24539361 chr3L 17750665..17750773 908..1016 545 100 Plus
chr3L 24539361 chr3L 17750990..17751087 1074..1171 490 100 Plus
chr3L 24539361 chr3L 17751530..17751602 1424..1496 365 100 Plus
chr3L 24539361 chr3L 17750833..17750892 1016..1075 300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17762038..17762466 1497..1925 2145 100 Plus
3L 28110227 3L 17762601..17762905 1925..2229 1525 100 Plus
3L 28110227 3L 17759968..17760241 139..412 1370 100 Plus
3L 28110227 3L 17760720..17760976 652..908 1285 100 Plus
3L 28110227 3L 17761595..17761846 1172..1423 1260 100 Plus
3L 28110227 3L 17760401..17760574 446..619 870 100 Plus
3L 28110227 3L 17759755..17759883 11..139 645 100 Plus
3L 28110227 3L 17761034..17761142 908..1016 545 100 Plus
3L 28110227 3L 17761359..17761456 1074..1171 490 100 Plus
3L 28110227 3L 17761899..17761971 1424..1496 365 100 Plus
3L 28110227 3L 17761202..17761261 1016..1075 300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17755138..17755566 1497..1925 2145 100 Plus
3L 28103327 3L 17755701..17756005 1925..2229 1525 100 Plus
3L 28103327 3L 17753068..17753341 139..412 1370 100 Plus
3L 28103327 3L 17753820..17754076 652..908 1285 100 Plus
3L 28103327 3L 17754695..17754946 1172..1423 1260 100 Plus
3L 28103327 3L 17753501..17753674 446..619 870 100 Plus
3L 28103327 3L 17752855..17752983 11..139 645 100 Plus
3L 28103327 3L 17754134..17754242 908..1016 545 100 Plus
3L 28103327 3L 17754459..17754556 1074..1171 490 100 Plus
3L 28103327 3L 17754999..17755071 1424..1496 365 100 Plus
3L 28103327 3L 17754302..17754361 1016..1075 300 100 Plus
3L 28103327 3L 17753413..17753446 412..445 170 100 Plus
3L 28103327 3L 17753728..17753760 620..652 165 100 Plus
Blast to na_te.dros performed 2019-03-16 07:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6844 791..865 131 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1060..1126 799..865 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2287..2450 694..865 119 56.4 Plus
roo 9092 roo DM_ROO 9092bp 1072..1162 771..859 117 62 Plus
roo 9092 roo DM_ROO 9092bp 1112..1190 821..903 115 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2315..2405 771..865 114 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6793 800..865 114 69.7 Plus

AT19257.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:38:38 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17749381..17749513 6..138 98 -> Plus
chr3L 17749599..17749872 139..412 100 -> Plus
chr3L 17749945..17749977 413..445 100 -> Plus
chr3L 17750032..17750205 446..619 100 -> Plus
chr3L 17750259..17750291 620..652 100 -> Plus
chr3L 17750352..17750606 653..907 100 -> Plus
chr3L 17750665..17750772 908..1015 100 -> Plus
chr3L 17750833..17750892 1016..1075 100 -> Plus
chr3L 17750992..17751087 1076..1171 100 -> Plus
chr3L 17751226..17751477 1172..1423 100 -> Plus
chr3L 17751530..17751602 1424..1496 100 -> Plus
chr3L 17751669..17752096 1497..1924 100 -> Plus
chr3L 17752232..17752535 1925..2228 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:13:50 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RA 1..1722 317..2029 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:48 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RB 1..1713 317..2029 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:41:22 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RB 1..1713 317..2029 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:23 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RA 1..1722 317..2029 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:17 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RB 1..1713 317..2029 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:54 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RA 1..2235 3..2228 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:48 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RB 54..2276 6..2228 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:41:22 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RB 54..2276 6..2228 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:24 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RA 1..2235 3..2228 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:17 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
CG32181-RB 54..2276 6..2228 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:38 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17761595..17761846 1172..1423 100 -> Plus
3L 17761899..17761971 1424..1496 100 -> Plus
3L 17759750..17759882 6..138 98 -> Plus
3L 17759968..17760241 139..412 100 -> Plus
3L 17760314..17760346 413..445 100 -> Plus
3L 17760401..17760574 446..619 100 -> Plus
3L 17760628..17760660 620..652 100 -> Plus
3L 17760721..17760975 653..907 100 -> Plus
3L 17761034..17761141 908..1015 100 -> Plus
3L 17761202..17761261 1016..1075 100 -> Plus
3L 17761361..17761456 1076..1171 100 -> Plus
3L 17762038..17762465 1497..1924 100 -> Plus
3L 17762601..17762904 1925..2228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:38 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17761595..17761846 1172..1423 100 -> Plus
3L 17761899..17761971 1424..1496 100 -> Plus
3L 17759750..17759882 6..138 98 -> Plus
3L 17759968..17760241 139..412 100 -> Plus
3L 17760314..17760346 413..445 100 -> Plus
3L 17760401..17760574 446..619 100 -> Plus
3L 17760628..17760660 620..652 100 -> Plus
3L 17760721..17760975 653..907 100 -> Plus
3L 17761034..17761141 908..1015 100 -> Plus
3L 17761202..17761261 1016..1075 100 -> Plus
3L 17761361..17761456 1076..1171 100 -> Plus
3L 17762038..17762465 1497..1924 100 -> Plus
3L 17762601..17762904 1925..2228 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:38:38 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17761595..17761846 1172..1423 100 -> Plus
3L 17761899..17761971 1424..1496 100 -> Plus
3L 17759750..17759882 6..138 98 -> Plus
3L 17759968..17760241 139..412 100 -> Plus
3L 17760314..17760346 413..445 100 -> Plus
3L 17760401..17760574 446..619 100 -> Plus
3L 17760628..17760660 620..652 100 -> Plus
3L 17760721..17760975 653..907 100 -> Plus
3L 17761034..17761141 908..1015 100 -> Plus
3L 17761202..17761261 1016..1075 100 -> Plus
3L 17761361..17761456 1076..1171 100 -> Plus
3L 17762038..17762465 1497..1924 100 -> Plus
3L 17762601..17762904 1925..2228 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:41:22 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17753414..17753446 413..445 100 -> Plus
arm_3L 17753501..17753674 446..619 100 -> Plus
arm_3L 17753728..17753760 620..652 100 -> Plus
arm_3L 17752850..17752982 6..138 98 -> Plus
arm_3L 17753068..17753341 139..412 100 -> Plus
arm_3L 17753821..17754075 653..907 100 -> Plus
arm_3L 17754134..17754241 908..1015 100 -> Plus
arm_3L 17754302..17754361 1016..1075 100 -> Plus
arm_3L 17754461..17754556 1076..1171 100 -> Plus
arm_3L 17754695..17754946 1172..1423 100 -> Plus
arm_3L 17754999..17755071 1424..1496 100 -> Plus
arm_3L 17755138..17755565 1497..1924 100 -> Plus
arm_3L 17755701..17756004 1925..2228 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:42 Download gff for AT19257.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17753068..17753341 139..412 100 -> Plus
3L 17753414..17753446 413..445 100 -> Plus
3L 17753501..17753674 446..619 100 -> Plus
3L 17753728..17753760 620..652 100 -> Plus
3L 17753821..17754075 653..907 100 -> Plus
3L 17754134..17754241 908..1015 100 -> Plus
3L 17754302..17754361 1016..1075 100 -> Plus
3L 17754461..17754556 1076..1171 100 -> Plus
3L 17754695..17754946 1172..1423 100 -> Plus
3L 17754999..17755071 1424..1496 100 -> Plus
3L 17755138..17755565 1497..1924 100 -> Plus
3L 17755701..17756004 1925..2228 100   Plus
3L 17752850..17752982 6..138 98 -> Plus

AT19257.pep Sequence

Translation from 316 to 2028

> AT19257.pep
MPRNPVEPFQEPLYQHTLDGSRQKHSSVTQDVLPPSYNKDDEYQCCNMPE
CPNNSIPLQIPKNSLPRFQPLVNVSQHSRSHSFPRQNYRNNKTSHHNSTH
NHSDKRIKPQTPCELKVPSGNRCPTDQSSNHDTATGCRNNTSIDWNNSSQ
VGMNYGEFQRRQLLLQKIQQQQYQQQQARQQNQANLSWLEDEDPIEFAPD
LNSTRINQDDRHQQSRLQPNSICQKCNSRQQQSASRSILECDQTPEMVRN
QTKYETKTNETSYLQPPETLRNARCKPQANQSLRNQSQDICQDVSMNQIS
NCEQSMSKNTKYYSDPPESQYSCCSRGSTACDRSMKDSQNYACCANTSAS
GNQRLLEMSQVMSGRSCSTPTSLEKTKRNSSLRGRSMRVPVQTPEDRLVE
RIQNEYHETFVNDPYCPGVIQASLDGSENFNEYSREIAFAGPIPEKPYPV
DPVTMIEAIKLRIDHERKEIRKEKNRSEEGNRDLRNQSKERRSRRPRTTI
SEEIDSHFSPKIKSEVNRSVAAFLKAETEYRTSFERDSAFDAHINRFETN
LFDERIKVHSYSATTTPTHR*

AT19257.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10548-PA 229 GF10548-PA 32..228 371..569 464 46.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13633-PA 642 GG13633-PA 65..642 1..570 1912 69.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18005-PA 861 GH18005-PA 695..850 393..531 318 41.7 Plus
Dgri\GH16128-PA 99 GH16128-PA 3..98 470..568 147 38.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32181-PB 570 CG32181-PB 1..570 1..570 3044 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12395-PA 213 GI12395-PA 28..212 394..568 367 43.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15272-PA 283 GL15272-PA 110..281 398..567 381 44.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25719-PA 567 GM25719-PA 1..567 1..570 2363 81.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14726-PA 306 GD14726-PA 1..296 1..296 1243 87.5 Plus
Dsim\GD14727-PA 226 GD14727-PA 1..226 337..570 943 77.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12286-PA 228 GJ12286-PA 5..227 392..568 379 39.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12305-PA 247 GK12305-PA 179..246 502..568 161 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19929-PA 643 GE19929-PA 68..643 1..570 1963 70.3 Plus

AT19257.hyp Sequence

Translation from 316 to 2028

> AT19257.hyp
MPRNPVEPFQEPLYQHTLDGSRQKHSSVTQDVLPPSYNKDDEYQCCNMPE
CPNNSIPLQIPKNSLPRFQPLVNVSQHSRSHSFPRQNYRNNKTSHHNSTH
NHSDKRIKPQTPCELKVPSGNRCPTDQSSNHDTATGCRNNTSIDWNNSSQ
VGMNYGEFQRRQLLLQKIQQQQYQQQQARQQNQANLSWLEDEDPIEFAPD
LNSTRINQDDRHQQSRLQPNSICQKCNSRQQQSASRSILECDQTPEMVRN
QTKYETKTNETSYLQPPETLRNARCKPQANQSLRNQSQDICQDVSMNQIS
NCEQSMSKNTKYYSDPPESQYSCCSRGSTACDRSMKDSQNYACCANTSAS
GNQRLLEMSQVMSGRSCSTPTSLEKTKRNSSLRGRSMRVPVQTPEDRLVE
RIQNEYHETFVNDPYCPGVIQASLDGSENFNEYSREIAFAGPIPEKPYPV
DPVTMIEAIKLRIDHERKEIRKEKNRSEEGNRDLRNQSKERRSRRPRTTI
SEEIDSHFSPKIKSEVNRSVAAFLKAETEYRTSFERDSAFDAHINRFETN
LFDERIKVHSYSATTTPTHR*

AT19257.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32181-PB 570 CG32181-PB 1..570 1..570 3044 100 Plus