Clone AT19426 Report

Search the DGRC for AT19426

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:194
Well:26
Vector:pOTB7
Associated Gene/TranscriptCG5458-RA
Protein status:AT19426.pep: gold
Preliminary Size:1035
Sequenced Size:1317

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5458 2002-01-01 Sim4 clustering to Release 2
CG5458 2002-02-22 Blastp of sequenced clone
CG5458 2008-04-29 Release 5.5 accounting
CG5458 2008-08-15 Release 5.9 accounting
CG5458 2008-12-18 5.12 accounting

Clone Sequence Records

AT19426.complete Sequence

1317 bp (1317 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089373

> AT19426.complete
GCTAAGTTAACTATACAAACAGAATACATTTATTTAATGCCTACACAAAA
TATTTCCCGAACGTAATTCGTAAGTAAAAATCTGTACTTCACTCGGCAAT
AAAAAGAACCGAAAGGAGTTAGTTAACTCAAAATCATCACCATGGCCATG
ACCGAAATGTCCGAGGAGGATCTGTCGGCGCCCGAGGAAGAGGAGGATTT
GGGACCCAATATAGGCCTCTACATAGGCGGTCGAAATGCTGCCGGACAGA
GACAAGGTAGAGGTTGGGCCATCCTGCCCAACGGAGATCAGTATGATGGG
AACTACAGGAAGGGTCGCCGTCACGGCATCGGGGTGTACGTGTTCAAGGA
TGGTTCACGATACTACGGACAGTATCGCTGCGGGAAGCGTTGTGGGCGCG
GCATCTTCATCTATCCGGACGGATCCGTGTACGAGGGCAACTGGCGAAAG
AACTTGAAGCACGGCAAGGGCCGGTACAAGTATGTGAATGGGGACAACTA
TTCGGGTGACTGGTTCAAGGGACAACGTCATGGGGTGGGCATCTATCACT
TTAACAGCGGAAAGGATGGCTGCTGCCTGTCCGTCAGAATGAAGGCCACC
TGGAACAGCAACATGCGAACGGGTCCCTTCGAGCTGTATATCGGCAATGA
GGACAAGTGCACAATACTTCACGGAATTTGGGATAACCTGTACCCGAGTG
GACCGGCCGTGTTTAGCTTCAACAATCGATACCTTCTGCTGGGCTATTTC
CTGCCCGCCAGTTACAACATGAAGGCGATCAGCAACGAAGACGAGATGGA
GGACGCCGAGGAGCGCTTGGAGGACGAGATGGGTGAAGCGGAGCCAATGG
AACCAACACTATGGTTCGCCCAGGAGATGGCCGTGTATGACTTTTCGCTG
CTGCCGCAGGAGCCAGTGCCTCTGGCCATTTCCGATTCCGAGCTGTCCGT
CTGCTCGCTCTCCACTGAGCCGAGCATGCGCAGCGAGGAGAAGATCAGTT
GGTATGGAGAGGGTGAAGAGGCCGAGGGCGAGGAGGGCGGCGAGATGGAG
TGCTTCCCATGCGAGTGCGATCTCACCGATGTCAGCGAGGTGGAGACGGA
GAGCGAGGTGTGCAAAATCGACGCCAATCCATGCTGCATTGAGATCCTCA
AGCAACCAGAGTGTCCAGATCCTTAGGAATGTAGCTGCGCTATTCCACAT
GCATTTGTTATTGTTATTTTATGTTGCCTGCAAATGAAAGAATATATCAG
TATATCTGAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA

AT19426.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-RA 1269 CG5458-RA 1..1269 1..1271 6300 99.8 Plus
CG5287-RA 1562 CG5287-RA 1514..1562 1..49 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13182511..13183558 217..1264 5225 99.9 Plus
chr2L 23010047 chr2L 13182131..13182346 1..216 1080 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13183828..13184882 217..1271 5275 100 Plus
2L 23513712 2L 13183450..13183663 1..216 1015 99.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13183828..13184882 217..1271 5275 100 Plus
2L 23513712 2L 13183450..13183663 1..216 1025 99 Plus
Blast to na_te.dros performed 2019-03-15 17:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1527..1604 1254..1175 116 62.5 Minus

AT19426.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:47:47 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13182131..13182346 1..216 100 -> Plus
chr2L 13182511..13183558 217..1264 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:13:59 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1035 142..1176 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:20 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1035 142..1176 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:23 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1035 142..1176 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:34 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1035 142..1176 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:00 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1035 142..1176 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:06:10 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1262 1..1264 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:20 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1262 1..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:23 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1262 1..1264 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:34 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1262 1..1264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:00 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
CG5458-RA 1..1262 1..1264 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:47 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13183450..13183663 1..216 99 -> Plus
2L 13183828..13184875 217..1264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:47 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13183450..13183663 1..216 99 -> Plus
2L 13183828..13184875 217..1264 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:47 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13183450..13183663 1..216 99 -> Plus
2L 13183828..13184875 217..1264 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:23 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13183450..13183663 1..216 99 -> Plus
arm_2L 13183828..13184875 217..1264 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:55 Download gff for AT19426.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13183450..13183663 1..216 99 -> Plus
2L 13183828..13184875 217..1264 100   Plus

AT19426.hyp Sequence

Translation from 141 to 1175

> AT19426.hyp
MAMTEMSEEDLSAPEEEEDLGPNIGLYIGGRNAAGQRQGRGWAILPNGDQ
YDGNYRKGRRHGIGVYVFKDGSRYYGQYRCGKRCGRGIFIYPDGSVYEGN
WRKNLKHGKGRYKYVNGDNYSGDWFKGQRHGVGIYHFNSGKDGCCLSVRM
KATWNSNMRTGPFELYIGNEDKCTILHGIWDNLYPSGPAVFSFNNRYLLL
GYFLPASYNMKAISNEDEMEDAEERLEDEMGEAEPMEPTLWFAQEMAVYD
FSLLPQEPVPLAISDSELSVCSLSTEPSMRSEEKISWYGEGEEAEGEEGG
EMECFPCECDLTDVSEVETESEVCKIDANPCCIEILKQPECPDP*

AT19426.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-PA 344 CG5458-PA 1..344 1..344 1905 100 Plus
CG30429-PA 305 CG30429-PA 77..200 36..160 183 32.1 Plus
CG14490-PA 197 CG14490-PA 24..171 30..180 182 32.1 Plus
CG30429-PA 305 CG30429-PA 69..162 51..140 174 36.2 Plus
CG14490-PA 197 CG14490-PA 42..164 25..141 170 34.1 Plus
rtp-PA 198 CG10233-PA 47..157 33..143 159 33 Plus
CG30429-PA 305 CG30429-PA 89..193 21..124 156 31.4 Plus
rtp-PA 198 CG10233-PA 64..147 27..110 155 39.3 Plus

AT19426.pep Sequence

Translation from 141 to 1175

> AT19426.pep
MAMTEMSEEDLSAPEEEEDLGPNIGLYIGGRNAAGQRQGRGWAILPNGDQ
YDGNYRKGRRHGIGVYVFKDGSRYYGQYRCGKRCGRGIFIYPDGSVYEGN
WRKNLKHGKGRYKYVNGDNYSGDWFKGQRHGVGIYHFNSGKDGCCLSVRM
KATWNSNMRTGPFELYIGNEDKCTILHGIWDNLYPSGPAVFSFNNRYLLL
GYFLPASYNMKAISNEDEMEDAEERLEDEMGEAEPMEPTLWFAQEMAVYD
FSLLPQEPVPLAISDSELSVCSLSTEPSMRSEEKISWYGEGEEAEGEEGG
EMECFPCECDLTDVSEVETESEVCKIDANPCCIEILKQPECPDP*

AT19426.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14224-PA 346 GF14224-PA 1..346 1..344 1455 82.8 Plus
Dana\GF11503-PA 305 GF11503-PA 63..204 22..164 151 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23819-PA 344 GG23819-PA 1..344 1..344 1691 95.6 Plus
Dere\GG23038-PA 305 GG23038-PA 77..200 36..160 149 32.1 Plus
Dere\GG21832-PA 189 GG21832-PA 41..173 47..182 144 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11395-PA 341 GH11395-PA 1..340 1..343 1249 71.3 Plus
Dgri\GH22662-PA 300 GH22662-PA 48..187 7..141 162 33.6 Plus
Dgri\GH22033-PA 201 GH22033-PA 23..181 25..158 145 29.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5458-PA 344 CG5458-PA 1..344 1..344 1905 100 Plus
CG30429-PA 305 CG30429-PA 77..200 36..160 183 32.1 Plus
CG14490-PA 197 CG14490-PA 24..171 30..180 182 32.1 Plus
CG30429-PA 305 CG30429-PA 69..162 51..140 174 36.2 Plus
CG14490-PA 197 CG14490-PA 42..164 25..141 170 34.1 Plus
rtp-PA 198 CG10233-PA 47..157 33..143 159 33 Plus
CG30429-PA 305 CG30429-PA 89..193 21..124 156 31.4 Plus
rtp-PA 198 CG10233-PA 64..147 27..110 155 39.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18099-PA 348 GI18099-PA 1..348 1..344 1311 71.6 Plus
Dmoj\GI19121-PA 200 GI19121-PA 44..179 25..158 185 37.4 Plus
Dmoj\GI21175-PA 295 GI21175-PA 48..187 7..141 170 31.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24745-PA 343 GL24745-PA 1..343 1..344 1374 79.2 Plus
Dper\GL17232-PA 186 GL17232-PA 75..160 51..136 146 40.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18894-PA 343 GA18894-PA 1..343 1..344 1376 79.2 Plus
Dpse\GA13025-PA 186 GA13025-PA 75..160 51..136 145 40.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10213-PA 344 GM10213-PA 1..344 1..344 1820 99.1 Plus
Dsec\GM21832-PA 196 GM21832-PA 16..172 31..182 153 31.3 Plus
Dsec\GM16708-PA 305 GM16708-PA 77..200 36..160 151 32.8 Plus
Dsec\GM11928-PA 305 GM11928-PA 77..200 36..160 148 32.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23870-PA 344 GD23870-PA 1..344 1..344 1809 98.3 Plus
Dsim\GD11326-PA 196 GD11326-PA 16..163 31..141 152 30.4 Plus
Dsim\GD11922-PA 305 GD11922-PA 77..200 36..160 149 32.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16897-PA 346 GJ16897-PA 1..346 1..344 1307 72.1 Plus
Dvir\GJ21032-PA 295 GJ21032-PA 63..187 22..141 166 36.8 Plus
Dvir\GJ22253-PA 194 GJ22253-PA 18..179 22..158 159 33.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23959-PA 342 GK23959-PA 1..341 1..343 1354 77.2 Plus
Dwil\GK21721-PA 298 GK21721-PA 62..162 45..140 169 40.6 Plus
Dwil\GK22235-PA 195 GK22235-PA 77..166 51..139 151 41.1 Plus
Dwil\GK22235-PA 195 GK22235-PA 33..137 36..134 151 38.1 Plus
Dwil\GK21721-PA 298 GK21721-PA 63..187 22..141 149 32 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18622-PA 344 GE18622-PA 1..344 1..344 1665 94.5 Plus