Clone AT19436 Report

Search the DGRC for AT19436

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:194
Well:36
Vector:pOTB7
Associated Gene/Transcriptrnh1-RA
Protein status:AT19436.pep: gold
Preliminary Size:1071
Sequenced Size:1153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8729 2002-01-01 Sim4 clustering to Release 2
CG8729 2002-02-22 Blastp of sequenced clone
CG8729 2003-01-01 Sim4 clustering to Release 3
rnh1 2008-04-29 Release 5.5 accounting
rnh1 2008-08-15 Release 5.9 accounting
rnh1 2008-12-18 5.12 accounting

Clone Sequence Records

AT19436.complete Sequence

1153 bp (1153 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089374

> AT19436.complete
GTGCCACATATGTTTCGATAGACAACGTAAGAAAATTATGTTACTTCCGC
GGTATTTTTGCTGGAACCTCCAACGCTGCACGATGGCGTTTTACGCTGTA
GCCAGTGGGCGGCGGTCTGGAGTCTACGGCTCTTGGGCAGAGTGCGAGGA
GCAGGTCAAGGGTTTCAAGAACGCCAAATACAAGAAGTTTAAGACACGCC
AGGAAGCGGATCAGTTCGTTAATGGCTGCAAGTCGTATGCTCCGCAGGAT
GTGGCCGTGCCGCTGGGCAAGGAAAAGGCGTCACTGGCCAGTTGGAAAAA
CAGTATCGAAGTGAATAAGAACCCCAAGTACACAGATGAGTGGCCCGAAG
AGGATCACGACCTAGCCGAGGATGATCTGAATGCTGCCATGAACGAGGTT
GAGGGAGATCCAAAGCCATCTAACAGTAGCAATTTACCAGACATTCTCAA
TCGCAAGCGGAAGGGCACGACCAGCGGCGATAAGCGGAACAAGATCCCAC
GTCATGCCTCTCAGGTCTCAGAAGCCACAGGACTCAAGCAAGTGGGTGCC
TTCCAGTTTGAAATCGATGCAGAGGGCTATGTCATTGTGTACACAGATGG
CTCCTGCATAGGCAACGGACGAGCCGGCGCCTGTGCCGGCTATGGCGTTT
ATTTCGGCAAGAATCACCAGCTAAACGCAGCCAAGCCCGTGGAAGGACGC
GTTACAAATAATGTAGGTGAAATACAAGCGGCCATTCATGCCATTAAAAC
AGCTCTTGACTTGGGAATACAGAAGCTGTGCATCAGCACAGACTCTCAGT
TTTTGATCAACTCCATAACGCTGTGGGTTGCGGGTTGGAAAAAAAGGGAT
TGGAAGCTAAAGAACAATCAGCCTGTAAAAAACGTTGTTGACTTCAAGGA
ACTGGATAAACTGCTTCAGGAGAACAACATCACCGTGAAATGGAACTATG
TGGAGGCCCACAAGGGCATAGAGGGCAATGAAATGGCAGACAAATTGGCG
CGGCAAGGATCCGCCTTGTATAAGCAGAAAAATGGTTGAAAAGCTATTTT
AAATTTACCGTATTTTTAGTATGTAATTGATATGGCAACGCTGAATAAAT
TTTAGTTACGCGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

AT19436.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-RA 1315 rnh1-RA 1..1115 1..1115 5530 99.7 Plus
rnh1-RB 1258 rnh1-RB 380..1058 437..1115 3350 99.5 Plus
rnh1-RB 1258 rnh1-RB 1..379 1..379 1895 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3819401..3819779 379..1 1895 100 Minus
chr2R 21145070 chr2R 3818678..3818948 943..673 1310 98.9 Minus
chr2R 21145070 chr2R 3819004..3819239 672..437 1180 100 Minus
chr2R 21145070 chr2R 3818447..3818618 1114..943 860 100 Minus
chr2R 21145070 chr2R 3819292..3819349 436..379 290 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7932008..7932386 379..1 1895 100 Minus
2R 25286936 2R 7931285..7931555 943..673 1340 99.6 Minus
2R 25286936 2R 7931611..7931846 672..437 1150 99.2 Minus
2R 25286936 2R 7931053..7931225 1115..943 865 100 Minus
2R 25286936 2R 7931899..7931956 436..379 290 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7933207..7933585 379..1 1895 100 Minus
2R 25260384 2R 7932484..7932754 943..673 1340 99.6 Minus
2R 25260384 2R 7932810..7933045 672..437 1150 99.1 Minus
2R 25260384 2R 7932252..7932424 1115..943 865 100 Minus
2R 25260384 2R 7933098..7933155 436..379 290 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:24:28 has no hits.

AT19436.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:25:14 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3819401..3819779 1..379 100   Minus
chr2R 3818447..3818617 944..1114 100 <- Minus
chr2R 3818678..3818948 673..943 98 <- Minus
chr2R 3819004..3819239 437..672 100 <- Minus
chr2R 3819292..3819348 380..436 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:02 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 38..1039 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:22 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 38..1039 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:47:30 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 38..1039 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:35 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 38..1039 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:00 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1002 38..1039 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:06:12 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1114 1..1114 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:22 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1114 1..1114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:47:30 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1108 7..1114 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:35 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1114 1..1114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:00 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
rnh1-RA 1..1108 7..1114 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:14 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7931054..7931224 944..1114 100 <- Minus
2R 7931285..7931555 673..943 99 <- Minus
2R 7931611..7931846 437..672 99 <- Minus
2R 7931899..7931955 380..436 100 <- Minus
2R 7932008..7932386 1..379 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:14 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7931054..7931224 944..1114 100 <- Minus
2R 7931285..7931555 673..943 99 <- Minus
2R 7931611..7931846 437..672 99 <- Minus
2R 7931899..7931955 380..436 100 <- Minus
2R 7932008..7932386 1..379 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:14 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7931054..7931224 944..1114 100 <- Minus
2R 7931285..7931555 673..943 99 <- Minus
2R 7931611..7931846 437..672 99 <- Minus
2R 7931899..7931955 380..436 100 <- Minus
2R 7932008..7932386 1..379 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:47:30 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3818559..3818729 944..1114 100 <- Minus
arm_2R 3818790..3819060 673..943 99 <- Minus
arm_2R 3819116..3819351 437..672 99 <- Minus
arm_2R 3819404..3819460 380..436 100 <- Minus
arm_2R 3819513..3819891 1..379 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:57 Download gff for AT19436.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7932484..7932754 673..943 99 <- Minus
2R 7932810..7933045 437..672 99 <- Minus
2R 7933098..7933154 380..436 100 <- Minus
2R 7933207..7933585 1..379 100   Minus
2R 7932253..7932423 944..1114 100 <- Minus

AT19436.hyp Sequence

Translation from 1 to 1038

> AT19436.hyp
CHICFDRQRKKIMLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEE
QVKGFKNAKYKKFKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKN
SIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILN
RKRKGTTSGDKRNKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDG
SCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKT
ALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKE
LDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKNG*

AT19436.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-PA 333 CG8729-PA 1..333 13..345 1775 100 Plus
rnh1-PB 314 CG8729-PB 1..314 13..345 1647 94.3 Plus

AT19436.pep Sequence

Translation from 37 to 1038

> AT19436.pep
MLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEEQVKGFKNAKYKK
FKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKNSIEVNKNPKYTD
EWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSGDKR
NKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACA
GYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCIS
TDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITV
KWNYVEAHKGIEGNEMADKLARQGSALYKQKNG*

AT19436.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
rnh1-PA 333 CG8729-PA 1..333 1..333 1775 100 Plus
rnh1-PB 314 CG8729-PB 1..314 1..333 1647 94.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21286-PC 321 GA21286-PC 2..319 1..332 1208 71.4 Plus
Dpse\GA21286-PB 305 GA21286-PB 2..303 1..332 1137 67.5 Plus