AT19436.complete Sequence
1153 bp (1153 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089374
> AT19436.complete
GTGCCACATATGTTTCGATAGACAACGTAAGAAAATTATGTTACTTCCGC
GGTATTTTTGCTGGAACCTCCAACGCTGCACGATGGCGTTTTACGCTGTA
GCCAGTGGGCGGCGGTCTGGAGTCTACGGCTCTTGGGCAGAGTGCGAGGA
GCAGGTCAAGGGTTTCAAGAACGCCAAATACAAGAAGTTTAAGACACGCC
AGGAAGCGGATCAGTTCGTTAATGGCTGCAAGTCGTATGCTCCGCAGGAT
GTGGCCGTGCCGCTGGGCAAGGAAAAGGCGTCACTGGCCAGTTGGAAAAA
CAGTATCGAAGTGAATAAGAACCCCAAGTACACAGATGAGTGGCCCGAAG
AGGATCACGACCTAGCCGAGGATGATCTGAATGCTGCCATGAACGAGGTT
GAGGGAGATCCAAAGCCATCTAACAGTAGCAATTTACCAGACATTCTCAA
TCGCAAGCGGAAGGGCACGACCAGCGGCGATAAGCGGAACAAGATCCCAC
GTCATGCCTCTCAGGTCTCAGAAGCCACAGGACTCAAGCAAGTGGGTGCC
TTCCAGTTTGAAATCGATGCAGAGGGCTATGTCATTGTGTACACAGATGG
CTCCTGCATAGGCAACGGACGAGCCGGCGCCTGTGCCGGCTATGGCGTTT
ATTTCGGCAAGAATCACCAGCTAAACGCAGCCAAGCCCGTGGAAGGACGC
GTTACAAATAATGTAGGTGAAATACAAGCGGCCATTCATGCCATTAAAAC
AGCTCTTGACTTGGGAATACAGAAGCTGTGCATCAGCACAGACTCTCAGT
TTTTGATCAACTCCATAACGCTGTGGGTTGCGGGTTGGAAAAAAAGGGAT
TGGAAGCTAAAGAACAATCAGCCTGTAAAAAACGTTGTTGACTTCAAGGA
ACTGGATAAACTGCTTCAGGAGAACAACATCACCGTGAAATGGAACTATG
TGGAGGCCCACAAGGGCATAGAGGGCAATGAAATGGCAGACAAATTGGCG
CGGCAAGGATCCGCCTTGTATAAGCAGAAAAATGGTTGAAAAGCTATTTT
AAATTTACCGTATTTTTAGTATGTAATTGATATGGCAACGCTGAATAAAT
TTTAGTTACGCGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
AT19436.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-RA | 1315 | rnh1-RA | 1..1115 | 1..1115 | 5530 | 99.7 | Plus |
rnh1-RB | 1258 | rnh1-RB | 380..1058 | 437..1115 | 3350 | 99.5 | Plus |
rnh1-RB | 1258 | rnh1-RB | 1..379 | 1..379 | 1895 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:24:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 3819401..3819779 | 379..1 | 1895 | 100 | Minus |
chr2R | 21145070 | chr2R | 3818678..3818948 | 943..673 | 1310 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 3819004..3819239 | 672..437 | 1180 | 100 | Minus |
chr2R | 21145070 | chr2R | 3818447..3818618 | 1114..943 | 860 | 100 | Minus |
chr2R | 21145070 | chr2R | 3819292..3819349 | 436..379 | 290 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7932008..7932386 | 379..1 | 1895 | 100 | Minus |
2R | 25286936 | 2R | 7931285..7931555 | 943..673 | 1340 | 99.6 | Minus |
2R | 25286936 | 2R | 7931611..7931846 | 672..437 | 1150 | 99.2 | Minus |
2R | 25286936 | 2R | 7931053..7931225 | 1115..943 | 865 | 100 | Minus |
2R | 25286936 | 2R | 7931899..7931956 | 436..379 | 290 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 7933207..7933585 | 379..1 | 1895 | 100 | Minus |
2R | 25260384 | 2R | 7932484..7932754 | 943..673 | 1340 | 99.6 | Minus |
2R | 25260384 | 2R | 7932810..7933045 | 672..437 | 1150 | 99.1 | Minus |
2R | 25260384 | 2R | 7932252..7932424 | 1115..943 | 865 | 100 | Minus |
2R | 25260384 | 2R | 7933098..7933155 | 436..379 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 21:24:28 has no hits.
AT19436.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:25:14 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 3819401..3819779 | 1..379 | 100 | | Minus |
chr2R | 3818447..3818617 | 944..1114 | 100 | <- | Minus |
chr2R | 3818678..3818948 | 673..943 | 98 | <- | Minus |
chr2R | 3819004..3819239 | 437..672 | 100 | <- | Minus |
chr2R | 3819292..3819348 | 380..436 | 100 | <- | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:02 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 38..1039 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:22 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 38..1039 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:47:30 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 38..1039 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:35 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 38..1039 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:00 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1002 | 38..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:06:12 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1114 | 1..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:22 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1114 | 1..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:47:30 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1108 | 7..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:35 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1114 | 1..1114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:00 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rnh1-RA | 1..1108 | 7..1114 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:14 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931054..7931224 | 944..1114 | 100 | <- | Minus |
2R | 7931285..7931555 | 673..943 | 99 | <- | Minus |
2R | 7931611..7931846 | 437..672 | 99 | <- | Minus |
2R | 7931899..7931955 | 380..436 | 100 | <- | Minus |
2R | 7932008..7932386 | 1..379 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:14 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931054..7931224 | 944..1114 | 100 | <- | Minus |
2R | 7931285..7931555 | 673..943 | 99 | <- | Minus |
2R | 7931611..7931846 | 437..672 | 99 | <- | Minus |
2R | 7931899..7931955 | 380..436 | 100 | <- | Minus |
2R | 7932008..7932386 | 1..379 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:25:14 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7931054..7931224 | 944..1114 | 100 | <- | Minus |
2R | 7931285..7931555 | 673..943 | 99 | <- | Minus |
2R | 7931611..7931846 | 437..672 | 99 | <- | Minus |
2R | 7931899..7931955 | 380..436 | 100 | <- | Minus |
2R | 7932008..7932386 | 1..379 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:47:30 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3818559..3818729 | 944..1114 | 100 | <- | Minus |
arm_2R | 3818790..3819060 | 673..943 | 99 | <- | Minus |
arm_2R | 3819116..3819351 | 437..672 | 99 | <- | Minus |
arm_2R | 3819404..3819460 | 380..436 | 100 | <- | Minus |
arm_2R | 3819513..3819891 | 1..379 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:57 Download gff for
AT19436.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7932484..7932754 | 673..943 | 99 | <- | Minus |
2R | 7932810..7933045 | 437..672 | 99 | <- | Minus |
2R | 7933098..7933154 | 380..436 | 100 | <- | Minus |
2R | 7933207..7933585 | 1..379 | 100 | | Minus |
2R | 7932253..7932423 | 944..1114 | 100 | <- | Minus |
AT19436.hyp Sequence
Translation from 1 to 1038
> AT19436.hyp
CHICFDRQRKKIMLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEE
QVKGFKNAKYKKFKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKN
SIEVNKNPKYTDEWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILN
RKRKGTTSGDKRNKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDG
SCIGNGRAGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKT
ALDLGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKE
LDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKNG*
AT19436.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-PA | 333 | CG8729-PA | 1..333 | 13..345 | 1775 | 100 | Plus |
rnh1-PB | 314 | CG8729-PB | 1..314 | 13..345 | 1647 | 94.3 | Plus |
AT19436.pep Sequence
Translation from 37 to 1038
> AT19436.pep
MLLPRYFCWNLQRCTMAFYAVASGRRSGVYGSWAECEEQVKGFKNAKYKK
FKTRQEADQFVNGCKSYAPQDVAVPLGKEKASLASWKNSIEVNKNPKYTD
EWPEEDHDLAEDDLNAAMNEVEGDPKPSNSSNLPDILNRKRKGTTSGDKR
NKIPRHASQVSEATGLKQVGAFQFEIDAEGYVIVYTDGSCIGNGRAGACA
GYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALDLGIQKLCIS
TDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQENNITV
KWNYVEAHKGIEGNEMADKLARQGSALYKQKNG*
AT19436.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rnh1-PA | 333 | CG8729-PA | 1..333 | 1..333 | 1775 | 100 | Plus |
rnh1-PB | 314 | CG8729-PB | 1..314 | 1..333 | 1647 | 94.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA21286-PC | 321 | GA21286-PC | 2..319 | 1..332 | 1208 | 71.4 | Plus |
Dpse\GA21286-PB | 305 | GA21286-PB | 2..303 | 1..332 | 1137 | 67.5 | Plus |