Clone AT19489 Report

Search the DGRC for AT19489

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:194
Well:89
Vector:pOTB7
Associated Gene/TranscriptCG33054-RB
Protein status:AT19489.pep: gold
Sequenced Size:987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33054-RB 2009-01-21 est gleaning

Clone Sequence Records

AT19489.complete Sequence

987 bp assembled on 2009-04-13

GenBank Submission: BT082018.1

> AT19489.complete
GACTGTTACACTAAGTCAGACAGATCTAAAACCCTTATTTAAACTAAATG
TATTCTCCCAAACTTCTAGAACTACGTAGCGCATTTCGGCGAGCTTTTGT
AGTCGGAATGTCATCCAAACCTCAGTACACCCTAAGCGAAGTGGATGGGG
ATCTGTTTTCCGCCCCCAAGACCTATTCCTTGGCGCACTGTGTGGGCGCA
GATCTTGCGATGGGTGCTGGAATTGCCGTGCAGTTCAAGAAGGTATTCGG
AAGGTTGGACGAGCTGCAAGCCCAACAAGCGGGCAGTGGAGATATTGCGG
TGCTGAAGGATGACCAGCGGTACATTTACTACCTAGTAACCAAGCCTCAG
AGCTGGGGAAAGCCCACCTACGAATCTGTACAAGCATCTTTGGAGCAGAT
GCGTGAGCATATGCGCAAAAACAACGTGAATAAGCTGGCCATCCCAAAAA
TTGGCTGCGGAATTGATGGCTTGGAATGGGAAAAAGTCAGCGGAGTCCTC
GAGGAAAATAATGGATCGTTTAGTTTAATATGAGCCATTTACTTCATAGC
AACATAATTATAAACGACCAGCTCAACAGAATCCGCTTGAAAAACCTGGC
AAATTATTTCCTTAACTTTGGGCCAGTTTAGGCCATCCAAACCGCATCCA
ATGCGGGGCATGGCTAGCTTGGGTACTTGGTGGGAGATCTGCAAATGGTA
GAAAGATTCGTATATCATAACTTCTTATAAAAGATACATAAACATACCAT
GTGTTTTCGCATGGCGATCAAGGAACTCTGGAGAAGTTCGTAGGTGGGCT
TTCCCCAGCTGGATTTCTTGGTGATCAGATAGTAAATAAATCGCTGCTGG
TCCTGAAGGACAGCCACGCCGCCTGGCTGAACATTTTGTCTCTGCAAATT
CAACAACTGTCCAAATTTGTTTCTGGAAAATAGGCAAATTTACCATTTTA
TTAAAAACACTAAGCCATTAAAAAAAAAAAAAAAAAA

AT19489.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33054-RB 582 CG33054-RB 3..582 3..582 2900 100 Plus
CG34261-RA 894 CG34261-RA 177..644 970..503 2325 99.7 Minus
CG34261-RB 797 CG34261-RB 400..586 689..503 935 100 Minus
CG34261-RB 797 CG34261-RB 225..400 923..748 880 100 Minus
CG34261-RA 894 CG34261-RA 702..792 503..413 455 100 Minus
CG34261-RB 797 CG34261-RB 644..734 503..413 455 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21186030..21186496 969..503 2320 99.8 Minus
chr3L 24539361 chr3L 21186766..21187176 413..3 2055 100 Minus
chr3L 24539361 chr3L 21186554..21186644 503..413 455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21197023..21197490 970..503 2325 99.8 Minus
3L 28110227 3L 21197760..21198170 413..3 2055 100 Minus
3L 28110227 3L 21197548..21197638 503..413 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21190123..21190590 970..503 2325 99.7 Minus
3L 28103327 3L 21190860..21191270 413..3 2055 100 Minus
3L 28103327 3L 21190648..21190738 503..413 455 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:35:36 has no hits.

AT19489.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:36:17 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21186030..21186496 503..969 99 <- Minus
chr3L 21186555..21186643 414..502 100 <- Minus
chr3L 21186766..21187178 1..413 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:49:30 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..486 48..533 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:45:34 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..486 48..533 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:14:56 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..486 48..533 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:45:29 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..486 48..533 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-04-13 17:41:41 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..582 1..582 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:45:34 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..582 1..582 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:56 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..580 3..582 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:45:29 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
CG33054-RB 1..580 3..582 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:17 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21197024..21197490 503..969 99 <- Minus
3L 21197549..21197637 414..502 100 <- Minus
3L 21197760..21198172 1..413 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:17 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21197024..21197490 503..969 99 <- Minus
3L 21197549..21197637 414..502 100 <- Minus
3L 21197760..21198172 1..413 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:36:17 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21197024..21197490 503..969 99 <- Minus
3L 21197549..21197637 414..502 100 <- Minus
3L 21197760..21198172 1..413 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:56 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21190124..21190590 503..969 99 <- Minus
arm_3L 21190649..21190737 414..502 100 <- Minus
arm_3L 21190860..21191272 1..413 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:20:51 Download gff for AT19489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21190124..21190590 503..969 99 <- Minus
3L 21190649..21190737 414..502 100 <- Minus
3L 21190860..21191272 1..413 99   Minus

AT19489.pep Sequence

Translation from 47 to 532

> AT19489.pep
MYSPKLLELRSAFRRAFVVGMSSKPQYTLSEVDGDLFSAPKTYSLAHCVG
ADLAMGAGIAVQFKKVFGRLDELQAQQAGSGDIAVLKDDQRYIYYLVTKP
QSWGKPTYESVQASLEQMREHMRKNNVNKLAIPKIGCGIDGLEWEKVSGV
LEENNGSFSLI*

AT19489.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10183-PA 153 GF10183-PA 1..132 21..152 603 80.3 Plus
Dana\GF24299-PA 149 GF24299-PA 4..124 27..147 405 59.5 Plus
Dana\GF10182-PA 343 GF10182-PA 157..286 23..152 346 48.5 Plus
Dana\GF10182-PA 343 GF10182-PA 14..134 35..154 292 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13256-PA 153 GG13256-PA 1..132 21..152 689 97 Plus
Dere\GG16164-PA 148 GG16164-PA 5..128 28..151 391 55.6 Plus
Dere\GG13255-PA 343 GG13255-PA 157..284 25..152 357 50.8 Plus
Dere\GG13255-PA 343 GG13255-PA 12..132 35..154 295 44.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16527-PA 150 GH16527-PA 4..133 27..156 506 70 Plus
Dgri\GH14966-PA 148 GH14966-PA 2..128 27..153 403 57.5 Plus
Dgri\GH16526-PA 344 GH16526-PA 157..286 23..152 356 49.2 Plus
Dgri\GH16526-PA 344 GH16526-PA 8..133 29..153 300 42.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33054-PB 161 CG33054-PB 1..161 1..161 828 100 Plus
CG33054-PA 153 CG33054-PA 1..132 21..152 685 100 Plus
CG34261-PB 148 CG34261-PB 5..128 28..151 384 56.5 Plus
CG33056-PC 320 CG33056-PC 134..261 25..152 332 50.8 Plus
CG33056-PE 343 CG33056-PE 157..284 25..152 332 50.8 Plus
CG33056-PD 343 CG33056-PD 157..284 25..152 332 50.8 Plus
CG33056-PB 343 CG33056-PB 157..284 25..152 332 50.8 Plus
CG33056-PA 343 CG33056-PA 157..284 25..152 332 50.8 Plus
CG33056-PE 343 CG33056-PE 12..131 35..153 271 45 Plus
CG33056-PD 343 CG33056-PD 12..131 35..153 271 45 Plus
CG33056-PB 343 CG33056-PB 12..131 35..153 271 45 Plus
CG33056-PA 343 CG33056-PA 12..131 35..153 271 45 Plus
CG33056-PC 320 CG33056-PC 12..100 35..122 189 46.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12207-PA 171 GI12207-PA 1..150 1..153 566 64.7 Plus
Dmoj\GI13127-PA 150 GI13127-PA 4..130 27..153 415 57.5 Plus
Dmoj\GI12206-PA 345 GI12206-PA 158..287 23..152 351 50 Plus
Dmoj\GI12206-PA 345 GI12206-PA 14..134 35..153 273 41.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24601-PA 258 GL24601-PA 1..94 1..95 383 74.7 Plus
Dper\GL24600-PA 380 GL24600-PA 157..278 23..144 337 50.8 Plus
Dper\GL24666-PA 270 GL24666-PA 4..110 27..133 304 50.5 Plus
Dper\GL24600-PA 380 GL24600-PA 14..134 35..154 289 42.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17252-PA 152 GA17252-PA 6..131 27..152 598 84.1 Plus
Dpse\GA23945-PA 151 GA23945-PA 4..130 27..153 392 54.3 Plus
Dpse\GA17253-PA 344 GA17253-PA 157..286 23..152 354 50 Plus
Dpse\GA17253-PA 344 GA17253-PA 14..134 35..154 293 42.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22161-PA 149 GM22161-PA 1..141 21..161 712 94.3 Plus
Dsec\GM22160-PA 343 GM22160-PA 157..284 25..152 366 52.3 Plus
Dsec\GM22346-PA 127 GM22346-PA 1..107 45..151 344 57 Plus
Dsec\GM22160-PA 343 GM22160-PA 12..132 35..154 296 44.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12137-PA 127 GD12137-PA 1..106 21..152 509 78 Plus
Dsim\GD14939-PA 148 GD14939-PA 5..128 28..151 390 56.5 Plus
Dsim\GD12136-PA 343 GD12136-PA 157..284 25..152 362 51.6 Plus
Dsim\GD12136-PA 343 GD12136-PA 12..132 35..154 296 44.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11440-PA 168 GJ11440-PA 1..153 1..156 608 71.2 Plus
Dvir\GJ11439-PA 342 GJ11439-PA 157..286 23..152 350 48.5 Plus
Dvir\GJ11439-PA 342 GJ11439-PA 14..133 35..153 291 43.3 Plus
Dvir\GJ13876-PA 143 GJ13876-PA 4..116 27..143 284 47 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17373-PA 155 GK17373-PA 1..133 21..153 549 72.2 Plus
Dwil\GK16813-PA 148 GK16813-PA 4..130 27..153 392 53.5 Plus
Dwil\GK17372-PA 331 GK17372-PA 158..287 23..152 352 50 Plus
Dwil\GK17372-PA 331 GK17372-PA 14..134 35..153 269 40.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22355-PA 173 GE22355-PA 1..152 1..152 779 95.4 Plus
Dyak\GE23053-PA 148 GE23053-PA 5..128 28..151 396 57.3 Plus
Dyak\GE22958-PA 343 GE22958-PA 155..284 23..152 361 50.8 Plus
Dyak\GE19732-PA 127 GE19732-PA 1..107 45..151 350 58.9 Plus
Dyak\GE22354-PA 262 GE22354-PA 12..132 35..154 296 44.6 Plus
Dyak\GE22958-PA 343 GE22958-PA 12..132 35..154 292 43.8 Plus
Dyak\GE22354-PA 262 GE22354-PA 157..261 25..129 271 49.5 Plus

AT19489.hyp Sequence

Translation from 47 to 532

> AT19489.hyp
MYSPKLLELRSAFRRAFVVGMSSKPQYTLSEVDGDLFSAPKTYSLAHCVG
ADLAMGAGIAVQFKKVFGRLDELQAQQAGSGDIAVLKDDQRYIYYLVTKP
QSWGKPTYESVQASLEQMREHMRKNNVNKLAIPKIGCGIDGLEWEKVSGV
LEENNGSFSLI*

AT19489.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33054-PB 161 CG33054-PB 1..161 1..161 828 100 Plus
CG33054-PA 153 CG33054-PA 1..132 21..152 685 100 Plus
CG34261-PB 148 CG34261-PB 5..128 28..151 384 56.5 Plus
CG33056-PC 320 CG33056-PC 134..261 25..152 332 50.8 Plus
CG33056-PE 343 CG33056-PE 157..284 25..152 332 50.8 Plus
CG33056-PC 320 CG33056-PC 12..100 35..122 189 46.1 Plus