BDGP Sequence Production Resources |
Search the DGRC for AT19513
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 195 |
Well: | 13 |
Vector: | pOTB7 |
Associated Gene/Transcript | Fer2LCH-RA |
Protein status: | AT19513.pep: gold |
Preliminary Size: | 1110 |
Sequenced Size: | 1278 |
Gene | Date | Evidence |
---|---|---|
CG1469 | 2001-12-16 | Blastp of sequenced clone |
CG1469 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1469 | 2003-01-01 | Sim4 clustering to Release 3 |
Fer2LCH | 2008-04-29 | Release 5.5 accounting |
Fer2LCH | 2008-08-15 | Release 5.9 accounting |
Fer2LCH | 2008-12-18 | 5.12 accounting |
1278 bp (1278 high quality bases) assembled on 2001-12-16
GenBank Submission: AY070805
> AT19513.complete GTTTTAGCGAACTCGAAAGCGAACTGTCGCTCCGAACGGCGCACAAAACA CTTTTAAGCGCGCGCGCTCTCGGTTTTTCTTCGTGTGTGTCTGATAAAAC TCTCAGGAAACCACTTGAAATCCAAAGTGCAGCGTCCATATTTTGCACAC GCTGACAACCCTGTCGTGAGTCACCTTCCAGCAGGCGCAGCAACAACAGC ACTGGCAGCGGCCATATTTGAATGACACCGAAATCCCGCACTGAGCGCAA AACAACACATGCCCATGCACGCTCTCCAAAACCACACACACACAGCCATA TCGATCGCATAGAAAGAGACGTACGTGACGCTATAAACAGCAGTTGATTT TCAGAGTTTCACCAAGAAGCACATAAAGCGATTGAATTATTAATAAAAGC ACAGGCACTGGAATAAACCGTCGACATGAAATTTTTCGTTGCACTCGCTC TCTTTGCGTGCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGC CAGAACACTGTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTC CATTTGTAATGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCC AGTCCTACATCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTG GCCACCCACTTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCT GTACCAGGGACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCA AGCAGGTGACCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAG TCTTCCGGCTCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACT GCACTCCCTGGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAG CCACTCACGTGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGAT CCCGAGCTGGCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGA GAGCGTGCGCAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGA AGGTCCCCGACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAG AAGCAGTAAGGAGTGGAGACCACCTCCTTTTCCTCCTTCTTTTTCTAACA CGCTCCTACACTGTCTCCTCAAAATTGCTCTCATAATTCCCTTATAAATT TGTTTCCTTGGATTGTTCATCAATAAATCGCAGTGCAGCAGCAGCATTAT CAAAGCAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 26212222..26212933 | 545..1256 | 3545 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 26211104..26211426 | 91..413 | 1525 | 98.1 | Plus |
chr3R | 27901430 | chr3R | 26211723..26211852 | 414..543 | 635 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 26210356..26210449 | 1..94 | 455 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 30389696..30390410 | 543..1257 | 3560 | 99.9 | Plus |
3R | 32079331 | 3R | 30388580..30388902 | 91..413 | 1600 | 99.7 | Plus |
3R | 32079331 | 3R | 30389199..30389328 | 414..543 | 650 | 100 | Plus |
3R | 32079331 | 3R | 30387832..30387925 | 1..94 | 455 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 30130527..30131241 | 543..1257 | 3560 | 99.8 | Plus |
3R | 31820162 | 3R | 30129411..30129733 | 91..413 | 1600 | 99.6 | Plus |
3R | 31820162 | 3R | 30130030..30130159 | 414..543 | 650 | 100 | Plus |
3R | 31820162 | 3R | 30128663..30128756 | 1..94 | 455 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1110..1312 | 180..401 | 120 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1589 | 179..214 | 117 | 80.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7945..7990 | 166..211 | 113 | 71.7 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9389..9434 | 166..211 | 113 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2484 | 179..209 | 110 | 83.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 26210356..26210445 | 1..90 | 100 | -> | Plus |
chr3R | 26211104..26211426 | 91..413 | 98 | -> | Plus |
chr3R | 26211723..26211852 | 414..543 | 99 | -> | Plus |
chr3R | 26212221..26212933 | 544..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RC | 1..684 | 426..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RC | 1..684 | 426..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RB | 1..684 | 426..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RC | 1..684 | 426..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RB | 1..684 | 426..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RA | 1..1256 | 1..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RA | 1..1256 | 1..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RA | 29..1284 | 1..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RA | 1..1256 | 1..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Fer2LCH-RA | 29..1284 | 1..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30387832..30387921 | 1..90 | 100 | -> | Plus |
3R | 30388580..30388902 | 91..413 | 99 | -> | Plus |
3R | 30389199..30389328 | 414..543 | 100 | -> | Plus |
3R | 30389697..30390409 | 544..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30387832..30387921 | 1..90 | 100 | -> | Plus |
3R | 30388580..30388902 | 91..413 | 99 | -> | Plus |
3R | 30389199..30389328 | 414..543 | 100 | -> | Plus |
3R | 30389697..30390409 | 544..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30387832..30387921 | 1..90 | 100 | -> | Plus |
3R | 30388580..30388902 | 91..413 | 99 | -> | Plus |
3R | 30389199..30389328 | 414..543 | 100 | -> | Plus |
3R | 30389697..30390409 | 544..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 26214921..26215050 | 414..543 | 100 | -> | Plus |
arm_3R | 26214302..26214624 | 91..413 | 99 | -> | Plus |
arm_3R | 26213554..26213643 | 1..90 | 100 | -> | Plus |
arm_3R | 26215419..26216131 | 544..1256 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 30129411..30129733 | 91..413 | 99 | -> | Plus |
3R | 30130030..30130159 | 414..543 | 100 | -> | Plus |
3R | 30130528..30131240 | 544..1256 | 99 | Plus | |
3R | 30128663..30128752 | 1..90 | 100 | -> | Plus |
Translation from 425 to 1108
> AT19513.pep MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY ANDLAKLMKVPDPSLSVYLFDEYLQKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18833-PA | 225 | GF18833-PA | 1..225 | 1..227 | 1078 | 87.2 | Plus |
Dana\GF20872-PA | 189 | GF20872-PA | 26..179 | 55..224 | 139 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11747-PA | 227 | GG11747-PA | 1..227 | 1..227 | 1176 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19160-PA | 225 | GH19160-PA | 1..225 | 1..227 | 652 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer2LCH-PD | 227 | CG1469-PD | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PC | 227 | CG1469-PC | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PB | 227 | CG1469-PB | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PA | 227 | CG1469-PA | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PE | 236 | CG1469-PE | 1..236 | 1..227 | 1141 | 96.2 | Plus |
Fer3HCH-PA | 186 | CG4349-PA | 25..178 | 55..224 | 142 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23266-PA | 225 | GI23266-PA | 1..225 | 1..227 | 695 | 60.3 | Plus |
Dmoj\GI16260-PA | 190 | GI16260-PA | 25..178 | 55..224 | 140 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13455-PA | 224 | GL13455-PA | 1..224 | 1..227 | 1005 | 81.1 | Plus |
Dper\GL16490-PA | 194 | GL16490-PA | 26..179 | 55..224 | 147 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13179-PA | 224 | GA13179-PA | 1..224 | 1..227 | 1004 | 81.1 | Plus |
Dpse\GA22605-PA | 273 | GA22605-PA | 105..258 | 55..224 | 147 | 27.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12876-PA | 227 | GM12876-PA | 1..227 | 1..227 | 1198 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21514-PA | 227 | GD21514-PA | 1..227 | 1..227 | 1190 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10765-PA | 225 | GJ10765-PA | 1..225 | 1..227 | 724 | 62.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14130-PA | 225 | GK14130-PA | 1..225 | 1..227 | 990 | 82.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10874-PA | 227 | GE10874-PA | 1..227 | 1..227 | 1178 | 97.4 | Plus |
Translation from 425 to 1108
> AT19513.hyp MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY ANDLAKLMKVPDPSLSVYLFDEYLQKQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Fer2LCH-PD | 227 | CG1469-PD | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PC | 227 | CG1469-PC | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PB | 227 | CG1469-PB | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PA | 227 | CG1469-PA | 1..227 | 1..227 | 1161 | 100 | Plus |
Fer2LCH-PE | 236 | CG1469-PE | 1..236 | 1..227 | 1141 | 96.2 | Plus |