Clone AT19513 Report

Search the DGRC for AT19513

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:195
Well:13
Vector:pOTB7
Associated Gene/TranscriptFer2LCH-RA
Protein status:AT19513.pep: gold
Preliminary Size:1110
Sequenced Size:1278

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1469 2001-12-16 Blastp of sequenced clone
CG1469 2002-01-01 Sim4 clustering to Release 2
CG1469 2003-01-01 Sim4 clustering to Release 3
Fer2LCH 2008-04-29 Release 5.5 accounting
Fer2LCH 2008-08-15 Release 5.9 accounting
Fer2LCH 2008-12-18 5.12 accounting

Clone Sequence Records

AT19513.complete Sequence

1278 bp (1278 high quality bases) assembled on 2001-12-16

GenBank Submission: AY070805

> AT19513.complete
GTTTTAGCGAACTCGAAAGCGAACTGTCGCTCCGAACGGCGCACAAAACA
CTTTTAAGCGCGCGCGCTCTCGGTTTTTCTTCGTGTGTGTCTGATAAAAC
TCTCAGGAAACCACTTGAAATCCAAAGTGCAGCGTCCATATTTTGCACAC
GCTGACAACCCTGTCGTGAGTCACCTTCCAGCAGGCGCAGCAACAACAGC
ACTGGCAGCGGCCATATTTGAATGACACCGAAATCCCGCACTGAGCGCAA
AACAACACATGCCCATGCACGCTCTCCAAAACCACACACACACAGCCATA
TCGATCGCATAGAAAGAGACGTACGTGACGCTATAAACAGCAGTTGATTT
TCAGAGTTTCACCAAGAAGCACATAAAGCGATTGAATTATTAATAAAAGC
ACAGGCACTGGAATAAACCGTCGACATGAAATTTTTCGTTGCACTCGCTC
TCTTTGCGTGCCTCGGCTCTCTTGCCTTGGCCAAGGATGATGAATATTGC
CAGAACACTGTAATCACCGCATGCTCTACGTCAGCCTTTTCGGCCAACTC
CATTTGTAATGCCCGTTTTGCTGGCATTGACCATATTGAGCCCGAGATCC
AGTCCTACATCAACGCCAACTTGGCCAAGTCGTACGACTACCTCCTGCTG
GCCACCCACTTCAACTCCTACCAGAAGAACCGCCCCGGCTTCCAGAAGCT
GTACCAGGGACTCTCGGACCGCTCCTTCGAGGACAGCATTGCCCTGATCA
AGCAGGTGACCCGTCGCGGAGGAATCGTTGACTTCAACACCCGCCACGAG
TCTTCCGGCTCCGTGAGCACCAAGCGCGGCACTCTTGAGGTCGACGAACT
GCACTCCCTGGCTCTGGCTCTGGACACCGAGAAGCAGCTGGCCACCGGAG
CCACTCACGTGCACTCCCGTGCCACCCACGCCACCGACGCCGAGAGGGAT
CCCGAGCTGGCCCACTACTTCGAGGAGAACTTCCTGGGCAAGCAGGCCGA
GAGCGTGCGCAAGCTGTCCGGTTATGCCAACGACCTCGCCAAGCTGATGA
AGGTCCCCGACCCATCCCTGTCCGTCTACCTGTTCGACGAGTATCTGCAG
AAGCAGTAAGGAGTGGAGACCACCTCCTTTTCCTCCTTCTTTTTCTAACA
CGCTCCTACACTGTCTCCTCAAAATTGCTCTCATAATTCCCTTATAAATT
TGTTTCCTTGGATTGTTCATCAATAAATCGCAGTGCAGCAGCAGCATTAT
CAAAGCAAAAAAAAAAAAAAAAAAAAAA

AT19513.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-RA 1544 Fer2LCH-RA 1..1257 1..1257 6255 99.8 Plus
Fer2LCH-RB 1556 Fer2LCH-RB 103..1269 91..1257 5805 99.8 Plus
Fer2LCH.b 1523 Fer2LCH.b 70..1236 91..1257 5805 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26212222..26212933 545..1256 3545 99.9 Plus
chr3R 27901430 chr3R 26211104..26211426 91..413 1525 98.1 Plus
chr3R 27901430 chr3R 26211723..26211852 414..543 635 99.2 Plus
chr3R 27901430 chr3R 26210356..26210449 1..94 455 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30389696..30390410 543..1257 3560 99.9 Plus
3R 32079331 3R 30388580..30388902 91..413 1600 99.7 Plus
3R 32079331 3R 30389199..30389328 414..543 650 100 Plus
3R 32079331 3R 30387832..30387925 1..94 455 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 30130527..30131241 543..1257 3560 99.8 Plus
3R 31820162 3R 30129411..30129733 91..413 1600 99.6 Plus
3R 31820162 3R 30130030..30130159 414..543 650 100 Plus
3R 31820162 3R 30128663..30128756 1..94 455 98.9 Plus
Blast to na_te.dros performed 2019-03-16 05:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1110..1312 180..401 120 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1589 179..214 117 80.6 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7945..7990 166..211 113 71.7 Plus
TART-C 11124 TART-C TARTC 11124bp 9389..9434 166..211 113 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2484 179..209 110 83.9 Plus

AT19513.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:19:00 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26210356..26210445 1..90 100 -> Plus
chr3R 26211104..26211426 91..413 98 -> Plus
chr3R 26211723..26211852 414..543 99 -> Plus
chr3R 26212221..26212933 544..1256 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:13 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RC 1..684 426..1109 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:54 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RC 1..684 426..1109 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:41:50 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 1..684 426..1109 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:27 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RC 1..684 426..1109 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:59:54 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RB 1..684 426..1109 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:25 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RA 1..1256 1..1256 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:54 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RA 1..1256 1..1256 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:41:50 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RA 29..1284 1..1256 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:27 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RA 1..1256 1..1256 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:59:54 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
Fer2LCH-RA 29..1284 1..1256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:00 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30387832..30387921 1..90 100 -> Plus
3R 30388580..30388902 91..413 99 -> Plus
3R 30389199..30389328 414..543 100 -> Plus
3R 30389697..30390409 544..1256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:00 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30387832..30387921 1..90 100 -> Plus
3R 30388580..30388902 91..413 99 -> Plus
3R 30389199..30389328 414..543 100 -> Plus
3R 30389697..30390409 544..1256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:19:00 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30387832..30387921 1..90 100 -> Plus
3R 30388580..30388902 91..413 99 -> Plus
3R 30389199..30389328 414..543 100 -> Plus
3R 30389697..30390409 544..1256 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:41:50 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26214921..26215050 414..543 100 -> Plus
arm_3R 26214302..26214624 91..413 99 -> Plus
arm_3R 26213554..26213643 1..90 100 -> Plus
arm_3R 26215419..26216131 544..1256 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:10 Download gff for AT19513.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30129411..30129733 91..413 99 -> Plus
3R 30130030..30130159 414..543 100 -> Plus
3R 30130528..30131240 544..1256 99   Plus
3R 30128663..30128752 1..90 100 -> Plus

AT19513.pep Sequence

Translation from 425 to 1108

> AT19513.pep
MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG
IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS
FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD
TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY
ANDLAKLMKVPDPSLSVYLFDEYLQKQ*

AT19513.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18833-PA 225 GF18833-PA 1..225 1..227 1078 87.2 Plus
Dana\GF20872-PA 189 GF20872-PA 26..179 55..224 139 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11747-PA 227 GG11747-PA 1..227 1..227 1176 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19160-PA 225 GH19160-PA 1..225 1..227 652 55.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-PD 227 CG1469-PD 1..227 1..227 1161 100 Plus
Fer2LCH-PC 227 CG1469-PC 1..227 1..227 1161 100 Plus
Fer2LCH-PB 227 CG1469-PB 1..227 1..227 1161 100 Plus
Fer2LCH-PA 227 CG1469-PA 1..227 1..227 1161 100 Plus
Fer2LCH-PE 236 CG1469-PE 1..236 1..227 1141 96.2 Plus
Fer3HCH-PA 186 CG4349-PA 25..178 55..224 142 24.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23266-PA 225 GI23266-PA 1..225 1..227 695 60.3 Plus
Dmoj\GI16260-PA 190 GI16260-PA 25..178 55..224 140 25.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13455-PA 224 GL13455-PA 1..224 1..227 1005 81.1 Plus
Dper\GL16490-PA 194 GL16490-PA 26..179 55..224 147 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13179-PA 224 GA13179-PA 1..224 1..227 1004 81.1 Plus
Dpse\GA22605-PA 273 GA22605-PA 105..258 55..224 147 27.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12876-PA 227 GM12876-PA 1..227 1..227 1198 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21514-PA 227 GD21514-PA 1..227 1..227 1190 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10765-PA 225 GJ10765-PA 1..225 1..227 724 62.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14130-PA 225 GK14130-PA 1..225 1..227 990 82.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10874-PA 227 GE10874-PA 1..227 1..227 1178 97.4 Plus

AT19513.hyp Sequence

Translation from 425 to 1108

> AT19513.hyp
MKFFVALALFACLGSLALAKDDEYCQNTVITACSTSAFSANSICNARFAG
IDHIEPEIQSYINANLAKSYDYLLLATHFNSYQKNRPGFQKLYQGLSDRS
FEDSIALIKQVTRRGGIVDFNTRHESSGSVSTKRGTLEVDELHSLALALD
TEKQLATGATHVHSRATHATDAERDPELAHYFEENFLGKQAESVRKLSGY
ANDLAKLMKVPDPSLSVYLFDEYLQKQ*

AT19513.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Fer2LCH-PD 227 CG1469-PD 1..227 1..227 1161 100 Plus
Fer2LCH-PC 227 CG1469-PC 1..227 1..227 1161 100 Plus
Fer2LCH-PB 227 CG1469-PB 1..227 1..227 1161 100 Plus
Fer2LCH-PA 227 CG1469-PA 1..227 1..227 1161 100 Plus
Fer2LCH-PE 236 CG1469-PE 1..236 1..227 1141 96.2 Plus