Clone AT19549 Report

Search the DGRC for AT19549

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:195
Well:49
Vector:pOTB7
Associated Gene/TranscriptCG15333-RA
Protein status:AT19549.pep: validated full length
Preliminary Size:719
Sequenced Size:1771

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15333 2002-01-01 Sim4 clustering to Release 2
CG15333 2002-06-10 Blastp of sequenced clone
CG15333 2003-01-01 Sim4 clustering to Release 3
CG15333 2008-04-29 Release 5.5 accounting
CG15333 2008-08-15 Release 5.9 accounting
CG15333 2008-12-18 5.12 accounting

Clone Sequence Records

AT19549.complete Sequence

1771 bp (1771 high quality bases) assembled on 2002-06-10

GenBank Submission: AY075234

> AT19549.complete
TGGATACGGTGCATCGTGATAAAGATCAGGTGGTAATCTTGAAGAAGGCC
AATTACTTGCCCTATCTGGTGAACCTGTTCATTCCGAAGTTGTTTTACCC
AGAGAAGATTGTGGTGGCCCGCCTATATCTCGATGTCAATAAGCACGATA
AGCAGGCAGCCGAAAACTTCGAGGGAACCGAGACCCCATGCTTTGATGTG
CCGCCATCCCTGTTCGCGGATAAGGTTCCAATGGACAAGATTGTCTTTCT
GCCAACGTCCATGTTGCCCATGGGCTTCGAAGCTGGCGGTGTTTTTGGGC
CGGGTATCCTTACGCGTCGTTCCTATCCCATTGACTTGAAGGCCGCGGGT
CACAAGGGTCAAACGCCGCCGCTGTTTGTCGGTTTGCGCATGGAAGTCCA
ACCGCCGACAAGGGTCGAGAGTCTCCTAAAAAAAGACGGTGAGTCCCAAC
CAATTCAGGACACATTGATGAATTGGTTGCATGCCAGCAATGATCTTATA
AATGGGGCACAGCCAAAAGGACAAGAGCTTCGTGATGAATTTTCGCTATC
GATGGTCTTCAATTTGCCAATACCACCGAGTCCACCATCGCCCTATTCAT
ATGGCCGTATCCCGTTGCAGTGCAACATTTATACGCCGGATCTGTCCAAT
GTTCTGTTGCTTATGTCGCACCAACGCGATCTTACGGTGGCGATACTGTC
CACCGTTAACAATCCGCATGTTCCATCTGTGGCATTCGCCACCATGGGCG
ATGATGCGGAGTGCCCCAAGTTCGAGCTGCCCATCGGAGTCTTTCCCATT
TGTGAGGGCGTCAATCGACCAATTTTTCTGCCCAAACGTTTCATGCCCAA
AGGATTCGAAGCCGGTTGCGTCATCAAGCCGGGAACTCTATCCGAACTGT
GGTTCATGGACTACATCGGACGTTTCGGTCCACCACAGCCACAGTATAAT
GGTTCCATCACACCACCGCTATTCGTTGGCAAGATTTGTCGCGAAGAGCC
GGCCGTCGATATGATAAAGAAAATTCAATTTGAGATCGAAAAGAAAGCCA
GCGATGATGCTGAGTCAAAGGCAACGCTAGCAGGTGTCAAACCTAAATTT
GATATTTCCATCACCAAGGGCTTTATGGTAATGGAAACGAAGGAGCCGAA
GTCACCAAAGGGGGCATACAGTGTGCAAAACTACGACGAGGCCTTTGATG
ATGGATGCATTGTGAGGGTGGTTAAGAAACCGGCCACTGCTGAAGAAGCC
ACAGAAACTCGAGAAAGGAATGAAATGTGTACAGTGGGCGATCAGTCGCA
GGAGTTGGATAAATGCTCAACTGAGGCTGATCAGAAATACCTATCGTGCT
TTCATGTTGATAGCGACATTGATAATATTGCCATGGCCATGGCCCGTTTG
GGCATCGCCGATATGAGTCTGCACGCCGACGAGGAGGAATTGTGCGGCAT
CGATGGTGATAACGCTTTGATTCAGTTGCGTCATGTCCTCGAGGATCGTA
ATCAAATACGCTCCCACACTGACCAGTTGATGCAGGATCATATCTTTCGA
ATGAATCGCGATCGGATGCTGGCCCTGCGTCAGCCATTTACTTGTTTCGG
ATGCGGTATTCATGAAAAAAAACAATAGTCCAAATGTTGGATGCTGTAAC
TCAATAAACTTTTAATTCAACTACCAATCGAATGATATTTACAACTGAAA
ATGTTTTATTTTGACTGTTTTGTTTAATAAAAAGTTAAATCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

AT19549.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-RA 1745 CG15333-RA 2..1745 1..1744 8705 99.9 Plus
CG15332-RA 2003 CG15332-RA 935..1160 682..907 785 89.8 Plus
CG15332-RB 2046 CG15332-RB 978..1203 682..907 785 89.8 Plus
CG15332-RA 2003 CG15332-RA 361..587 108..334 475 80.6 Plus
CG15332-RB 2046 CG15332-RB 404..630 108..334 475 80.6 Plus
CG15332-RA 2003 CG15332-RA 1374..1482 1112..1220 230 80.7 Plus
CG15332-RB 2046 CG15332-RB 1417..1525 1112..1220 230 80.7 Plus
CG15332-RA 2003 CG15332-RA 833..926 580..673 185 79.7 Plus
CG15332-RB 2046 CG15332-RB 876..969 580..673 185 79.7 Plus
CG15332-RA 2003 CG15332-RA 286..341 39..94 175 87.5 Plus
CG15332-RB 2046 CG15332-RB 329..384 39..94 175 87.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7911383..7913123 1741..1 8705 100 Minus
chrX 22417052 chrX 7846591..7846918 907..580 905 85.1 Minus
chrX 22417052 chrX 7847108..7847465 390..39 540 77.4 Minus
chrX 22417052 chrX 7846269..7846377 1220..1112 230 80.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:53:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8019520..8021263 1744..1 8705 99.9 Minus
X 23542271 X 7954695..7955022 907..580 905 85.1 Minus
X 23542271 X 7955212..7955569 390..39 540 77.4 Minus
X 23542271 X 7954373..7954481 1220..1112 230 80.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8027618..8029361 1744..1 8705 99.9 Minus
X 23527363 X 7962793..7963018 907..682 785 89.8 Minus
X 23527363 X 7963366..7963592 334..108 475 80.6 Minus
X 23527363 X 7962471..7962579 1220..1112 230 80.7 Minus
X 23527363 X 7963027..7963120 673..580 185 79.7 Minus
X 23527363 X 7963612..7963667 94..39 175 87.5 Minus
Blast to na_te.dros performed 2019-03-16 12:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 2602..2651 154..203 124 72 Plus
Osvaldo 1543 Osvaldo OSV 1543bp 1340..1389 154..203 115 70 Plus

AT19549.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:16:57 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7911383..7913123 1..1741 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:15 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1629 1..1628 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:25:14 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1629 1..1628 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:20:50 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1629 1..1628 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:15:46 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1629 1..1628 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:36 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1629 1..1628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:53:01 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1742 1..1741 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:25:14 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1742 1..1741 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:20:50 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 83..1823 1..1741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:15:46 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 2..1742 1..1741 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:36 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
CG15333-RA 83..1823 1..1741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:57 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
X 8019523..8021263 1..1741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:57 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
X 8019523..8021263 1..1741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:16:57 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
X 8019523..8021263 1..1741 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:20:50 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7913556..7915296 1..1741 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:48:56 Download gff for AT19549.complete
Subject Subject Range Query Range Percent Splice Strand
X 8027621..8029361 1..1741 99   Minus

AT19549.hyp Sequence

Translation from 2 to 1627

> AT19549.hyp
DTVHRDKDQVVILKKANYLPYLVNLFIPKLFYPEKIVVARLYLDVNKHDK
QAAENFEGTETPCFDVPPSLFADKVPMDKIVFLPTSMLPMGFEAGGVFGP
GILTRRSYPIDLKAAGHKGQTPPLFVGLRMEVQPPTRVESLLKKDGESQP
IQDTLMNWLHASNDLINGAQPKGQELRDEFSLSMVFNLPIPPSPPSPYSY
GRIPLQCNIYTPDLSNVLLLMSHQRDLTVAILSTVNNPHVPSVAFATMGD
DAECPKFELPIGVFPICEGVNRPIFLPKRFMPKGFEAGCVIKPGTLSELW
FMDYIGRFGPPQPQYNGSITPPLFVGKICREEPAVDMIKKIQFEIEKKAS
DDAESKATLAGVKPKFDISITKGFMVMETKEPKSPKGAYSVQNYDEAFDD
GCIVRVVKKPATAEEATETRERNEMCTVGDQSQELDKCSTEADQKYLSCF
HVDSDIDNIAMAMARLGIADMSLHADEEELCGIDGDNALIQLRHVLEDRN
QIRSHTDQLMQDHIFRMNRDRMLALRQPFTCFGCGIHEKKQ*

AT19549.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-PA 542 CG15333-PA 2..542 1..541 2867 100 Plus
CG15332-PA 571 CG15332-PA 20..570 2..537 1412 52.3 Plus

AT19549.pep Sequence

Translation from 230 to 1627

> AT19549.pep
MDKIVFLPTSMLPMGFEAGGVFGPGILTRRSYPIDLKAAGHKGQTPPLFV
GLRMEVQPPTRVESLLKKDGESQPIQDTLMNWLHASNDLINGAQPKGQEL
RDEFSLSMVFNLPIPPSPPSPYSYGRIPLQCNIYTPDLSNVLLLMSHQRD
LTVAILSTVNNPHVPSVAFATMGDDAECPKFELPIGVFPICEGVNRPIFL
PKRFMPKGFEAGCVIKPGTLSELWFMDYIGRFGPPQPQYNGSITPPLFVG
KICREEPAVDMIKKIQFEIEKKASDDAESKATLAGVKPKFDISITKGFMV
METKEPKSPKGAYSVQNYDEAFDDGCIVRVVKKPATAEEATETRERNEMC
TVGDQSQELDKCSTEADQKYLSCFHVDSDIDNIAMAMARLGIADMSLHAD
EEELCGIDGDNALIQLRHVLEDRNQIRSHTDQLMQDHIFRMNRDRMLALR
QPFTCFGCGIHEKKQ*

AT19549.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20992-PA 587 GF20992-PA 106..348 1..254 525 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19680-PA 543 GG19680-PA 83..537 1..460 1336 60.7 Plus
Dere\GG17593-PA 554 GG17593-PA 97..551 1..459 1323 59.5 Plus
Dere\GG17591-PA 542 GG17591-PA 83..532 1..456 1318 60.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15333-PA 542 CG15333-PA 78..542 1..465 2464 100 Plus
CG15332-PA 571 CG15332-PA 97..570 1..461 1167 51.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21655-PA 645 GI21655-PA 102..337 1..251 326 31.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15244-PA 499 GL15244-PA 114..351 1..251 347 34.9 Plus
Dper\GL15244-PA 499 GL15244-PA 56..196 134..278 153 30.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22928-PA 505 GA22928-PA 114..351 1..251 345 34.9 Plus
Dpse\GA22928-PA 505 GA22928-PA 56..196 134..278 152 30.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11956-PA 540 GM11956-PA 81..540 1..464 1913 80.7 Plus
Dsec\GM11958-PA 493 GM11958-PA 97..453 1..357 918 54.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24576-PA 540 GD24576-PA 81..540 1..464 1924 80.5 Plus
Dsim\GD16138-PA 576 GD16138-PA 97..575 1..461 1148 52.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16893-PA 701 GJ16893-PA 264..383 130..250 243 45.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17493-PA 555 GE17493-PA 97..553 1..460 1262 57.6 Plus
Dyak\GE17491-PA 534 GE17491-PA 81..534 1..464 1242 57.3 Plus