Clone AT19555 Report

Search the DGRC for AT19555

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:195
Well:55
Vector:pOTB7
Associated Gene/TranscriptCG7220-RA
Protein status:AT19555.pep: gold
Sequenced Size:826

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7220 2002-01-01 Sim4 clustering to Release 2
CG7220 2003-01-01 Sim4 clustering to Release 3
CG7220 2003-03-31 Blastp of sequenced clone
CG7220 2008-04-29 Release 5.5 accounting
CG7220 2008-08-15 Release 5.9 accounting
CG7220 2008-12-18 5.12 accounting

Clone Sequence Records

AT19555.complete Sequence

826 bp (826 high quality bases) assembled on 2003-03-31

GenBank Submission: AY070806

> AT19555.complete
CCATTCTAGGGACCACAACAACTTTTCTAAACTGTCGTCAGTATAACTTG
TCAACCCAAATTGGATTGACAAATTTTTAAAACAATTATTGTACTCCGCT
GAAATTAAACTATTTACCGGCGTTCAAAGCGGAAAACTCAAAAATACCTA
CACGCGGAACAGCTGAGTGCGAGCTTTGGCCACGGAGGAAACGGAACAGA
TAGCCAGCGAGCGGAGCAGCCAGGACTTGGAGCAGGAATCGGCAGGAACA
CCAGGACGGATTTCCCCAAGACAAGCAGTAGTAGTATGTCTTCGAAGTCG
CCAAGCGAGCGCCGCCTACACAAAGAGCTGATGTCCCTGATCAAGGAGCC
GCCACCAGGCGTAACCATCGACACCGAGAGCGTACAACAAAATTTATCCG
AATGGAAAATAAACATTAAAGGTTTCGAGGGCACACTTTACGAGGGCGAG
GACTTCCAGCTACTTTTCAAATTCAACAATAAATATCCGTTCGATTCGCC
AGAGGTGACCTTCATCGGCACCAATATACCGGTGCATCCGCATGTCTACA
GCAACGGACACATCTGCCTATCCATTCTGACCGAGGACTGGTCCCCGGCG
CTGTCCGTGCAGTCCGTGTGCCTTAGCATAGCCTCCATGTTGAGTAGTTG
TCGCGAAAAGAAGCGTCCGCCGGACAACACGATATACGTAAAAACCTGTA
ATAAGAATCCTAAAAAGACTAAATGGTGGTACCACGATGATTCTGTTTAG
TTAAAATTGCCATTTACTAATACTGCCTGCTATTGTTTGCTTTGCGCATC
CAACCAAAAAAAAAAAAAAAAAAAAA

AT19555.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RA 1991 CG7220-RA 1..826 1..826 4130 100 Plus
CG7220-RC 2205 CG7220-RC 385..1040 171..826 3280 100 Plus
CG7220-RD 2017 CG7220-RD 198..852 172..826 3275 100 Plus
CG7220-RC 2205 CG7220-RC 83..253 1..171 855 100 Plus
CG7220-RD 2017 CG7220-RD 1..171 1..171 855 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6624625..6624858 503..736 1170 100 Plus
chr2R 21145070 chr2R 6618921..6619091 1..171 855 100 Plus
chr2R 21145070 chr2R 6619223..6619361 171..309 695 100 Plus
chr2R 21145070 chr2R 6624460..6624564 402..506 525 100 Plus
chr2R 21145070 chr2R 6624222..6624315 308..401 470 100 Plus
chr2R 21145070 chr2R 6624923..6624992 736..805 350 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 503..736 1170 100 Plus
2R 25286936 2R 10731356..10731526 1..171 855 100 Plus
2R 25286936 2R 10731658..10731796 171..309 695 100 Plus
2R 25286936 2R 10736893..10736997 402..506 525 100 Plus
2R 25286936 2R 10736655..10736748 308..401 470 100 Plus
2R 25286936 2R 10737356..10737446 736..826 455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10738257..10738490 503..736 1170 100 Plus
2R 25260384 2R 10732555..10732725 1..171 855 100 Plus
2R 25260384 2R 10732857..10732995 171..309 695 100 Plus
2R 25260384 2R 10738092..10738196 402..506 525 100 Plus
2R 25260384 2R 10737854..10737947 308..401 470 100 Plus
2R 25260384 2R 10738555..10738645 736..826 455 100 Plus
Blast to na_te.dros performed 2019-03-16 00:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 10..97 20..110 133 62.6 Plus
gypsy4 6852 gypsy4 GYPSY4 6852bp 5028..5203 792..616 126 55.6 Minus
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 798..880 247..166 114 64.3 Minus

AT19555.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:04 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6624224..6624315 310..401 100 -> Plus
chr2R 6624460..6624562 402..504 100 -> Plus
chr2R 6618921..6619091 1..171 100 -> Plus
chr2R 6619224..6619361 172..309 100 -> Plus
chr2R 6624627..6624858 505..736 100 -> Plus
chr2R 6624924..6624992 737..805 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:17 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RC 1..465 286..750 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:40:04 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RC 1..465 286..750 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:50 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 1..465 286..750 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:27:19 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RC 1..465 286..750 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:11:38 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 1..465 286..750 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:48:52 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RA 1..805 1..805 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:40:04 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RA 1..805 1..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:50 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RA 1..805 1..805 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:27:21 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RA 1..805 1..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:11:38 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RA 22..826 1..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:04 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10737060..10737291 505..736 100 -> Plus
2R 10737357..10737425 737..805 100   Plus
2R 10731356..10731526 1..171 100 -> Plus
2R 10731659..10731796 172..309 100 -> Plus
2R 10736657..10736748 310..401 100 -> Plus
2R 10736893..10736995 402..504 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:04 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10737060..10737291 505..736 100 -> Plus
2R 10737357..10737425 737..805 100   Plus
2R 10731356..10731526 1..171 100 -> Plus
2R 10731659..10731796 172..309 100 -> Plus
2R 10736657..10736748 310..401 100 -> Plus
2R 10736893..10736995 402..504 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:04 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10737060..10737291 505..736 100 -> Plus
2R 10737357..10737425 737..805 100   Plus
2R 10731356..10731526 1..171 100 -> Plus
2R 10731659..10731796 172..309 100 -> Plus
2R 10736657..10736748 310..401 100 -> Plus
2R 10736893..10736995 402..504 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:50 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6618861..6619031 1..171 100 -> Plus
arm_2R 6619164..6619301 172..309 100 -> Plus
arm_2R 6624162..6624253 310..401 100 -> Plus
arm_2R 6624398..6624500 402..504 100 -> Plus
arm_2R 6624565..6624796 505..736 100 -> Plus
arm_2R 6624862..6624930 737..805 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:01:17 Download gff for AT19555.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10738556..10738624 737..805 100   Plus
2R 10738259..10738490 505..736 100 -> Plus
2R 10732555..10732725 1..171 100 -> Plus
2R 10732858..10732995 172..309 100 -> Plus
2R 10737856..10737947 310..401 100 -> Plus
2R 10738092..10738194 402..504 100 -> Plus

AT19555.hyp Sequence

Translation from 285 to 749

> AT19555.hyp
MSSKSPSERRLHKELMSLIKEPPPGVTIDTESVQQNLSEWKINIKGFEGT
LYEGEDFQLLFKFNNKYPFDSPEVTFIGTNIPVHPHVYSNGHICLSILTE
DWSPALSVQSVCLSIASMLSSCREKKRPPDNTIYVKTCNKNPKKTKWWYH
DDSV*

AT19555.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PC 154 CG7220-PC 1..154 1..154 836 100 Plus
CG7220-PA 154 CG7220-PA 1..154 1..154 836 100 Plus
CG7220-PD 154 CG7220-PD 1..154 1..154 836 100 Plus
CG7220-PE 190 CG7220-PE 44..190 8..154 803 100 Plus
CG7220-PF 190 CG7220-PF 44..190 8..154 803 100 Plus

AT19555.pep Sequence

Translation from 285 to 749

> AT19555.pep
MSSKSPSERRLHKELMSLIKEPPPGVTIDTESVQQNLSEWKINIKGFEGT
LYEGEDFQLLFKFNNKYPFDSPEVTFIGTNIPVHPHVYSNGHICLSILTE
DWSPALSVQSVCLSIASMLSSCREKKRPPDNTIYVKTCNKNPKKTKWWYH
DDSV*

AT19555.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13774-PA 154 GF13774-PA 1..154 1..154 807 97.4 Plus
Dana\GF14068-PA 224 GF14068-PA 82..193 7..122 217 43.1 Plus
Dana\GF10262-PA 350 GF10262-PA 183..319 10..148 213 38 Plus
Dana\GF19392-PA 272 GF19392-PA 87..217 10..151 210 35.2 Plus
Dana\GF18131-PA 147 GF18131-PA 4..110 9..119 196 40.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20145-PA 154 GG20145-PA 1..154 1..154 814 99.4 Plus
Dere\GG10359-PA 232 GG10359-PA 87..198 7..122 218 43.1 Plus
Dere\GG17717-PA 241 GG17717-PA 78..208 10..151 207 35.2 Plus
Dere\GG24787-PA 169 GG24787-PA 20..149 5..139 200 36.8 Plus
Dere\GG21088-PA 147 GG21088-PA 4..110 9..119 196 40.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21269-PA 154 GH21269-PA 1..154 1..154 778 94.2 Plus
Dgri\GH13340-PA 240 GH13340-PA 95..206 7..122 216 43.1 Plus
Dgri\GH17966-PA 268 GH17966-PA 52..160 10..122 206 38.1 Plus
Dgri\GH14086-PA 147 GH14086-PA 4..110 9..119 196 40.5 Plus
Dgri\GH15302-PA 151 GH15302-PA 3..114 5..120 190 36.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PC 154 CG7220-PC 1..154 1..154 836 100 Plus
CG7220-PA 154 CG7220-PA 1..154 1..154 836 100 Plus
CG7220-PD 154 CG7220-PD 1..154 1..154 836 100 Plus
CG7220-PE 190 CG7220-PE 44..190 8..154 803 100 Plus
CG7220-PF 190 CG7220-PF 44..190 8..154 803 100 Plus
CG7220-PB 190 CG7220-PB 44..190 8..154 803 100 Plus
Ubc2-PD 232 CG6720-PD 87..198 7..122 217 43.1 Plus
Ubc2-PC 232 CG6720-PC 87..198 7..122 217 43.1 Plus
Ubc2-PB 232 CG6720-PB 87..198 7..122 217 43.1 Plus
Ubc2-PA 232 CG6720-PA 87..198 7..122 217 43.1 Plus
CG2574-PA 239 CG2574-PA 66..196 10..151 202 35.9 Plus
CG5440-PC 169 CG5440-PC 24..161 9..148 197 35 Plus
CG5440-PB 169 CG5440-PB 24..161 9..148 197 35 Plus
eff-PC 147 CG7425-PC 4..110 9..119 195 40.5 Plus
eff-PB 147 CG7425-PB 4..110 9..119 195 40.5 Plus
eff-PA 147 CG7425-PA 4..110 9..119 195 40.5 Plus
vih-PA 178 CG10682-PA 35..141 9..119 185 36.9 Plus
Ubc6-PC 151 CG2013-PC 3..114 5..120 184 36.2 Plus
Ubc6-PA 151 CG2013-PA 3..114 5..120 184 36.2 Plus
Ubc7-PB 167 CG4443-PB 7..128 9..120 177 35.2 Plus
Ubc7-PA 167 CG4443-PA 7..128 9..120 177 35.2 Plus
CG7656-PF 317 CG7656-PF 39..164 5..120 176 34.9 Plus
CG7656-PA 317 CG7656-PA 39..164 5..120 176 34.9 Plus
CG7656-PE 319 CG7656-PE 39..164 5..120 176 34.9 Plus
CG7656-PD 319 CG7656-PD 39..164 5..120 176 34.9 Plus
ben-PE 151 CG18319-PE 6..114 9..121 171 35.4 Plus
ben-PD 151 CG18319-PD 6..114 9..121 171 35.4 Plus
ben-PB 151 CG18319-PB 6..114 9..121 171 35.4 Plus
ben-PC 151 CG18319-PC 6..114 9..121 171 35.4 Plus
ben-PA 151 CG18319-PA 6..114 9..121 171 35.4 Plus
CG3473-PB 151 CG3473-PB 7..114 10..121 168 34.8 Plus
CG3473-PA 151 CG3473-PA 7..114 10..121 168 34.8 Plus
CG10862-PA 354 CG10862-PA 212..318 10..120 164 36.9 Plus
Ubc4-PC 199 CG8284-PC 10..130 9..133 145 35.7 Plus
Ubc4-PB 199 CG8284-PB 10..130 9..133 145 35.7 Plus
Ubc4-PA 199 CG8284-PA 10..130 9..133 145 35.7 Plus
CG8188-PD 209 CG8188-PD 17..123 9..119 142 29.7 Plus
CG8188-PC 209 CG8188-PC 17..123 9..119 142 29.7 Plus
CG8188-PB 209 CG8188-PB 17..123 9..119 142 29.7 Plus
CG8188-PA 209 CG8188-PA 17..123 9..119 142 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19345-PA 154 GI19345-PA 1..154 1..154 807 97.4 Plus
Dmoj\GI17815-PA 240 GI17815-PA 95..206 7..122 217 43.1 Plus
Dmoj\GI21620-PA 382 GI21620-PA 123..231 10..122 203 39.8 Plus
Dmoj\GI10619-PA 147 GI10619-PA 4..110 9..119 196 40.5 Plus
Dmoj\GI22506-PA 151 GI22506-PA 3..114 5..120 190 36.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17305-PA 154 GL17305-PA 1..154 1..154 792 94.2 Plus
Dper\GL26387-PA 228 GL26387-PA 83..194 7..122 218 43.1 Plus
Dper\GL23670-PA 147 GL23670-PA 4..110 9..119 196 40.5 Plus
Dper\GL22213-PA 151 GL22213-PA 3..114 5..120 190 36.2 Plus
Dper\GL25195-PA 176 GL25195-PA 33..140 9..120 180 35.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20189-PA 154 GA20189-PA 1..154 1..154 792 94.2 Plus
Dpse\GA20189-PB 190 GA20189-PB 44..190 8..154 769 95.9 Plus
Dpse\GA19810-PA 228 GA19810-PA 83..194 7..122 218 43.1 Plus
Dpse\GA26693-PA 147 GA26693-PA 4..110 9..119 196 40.5 Plus
Dpse\GA15184-PA 151 GA15184-PA 3..114 5..120 190 36.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21234-PA 154 GM21234-PA 1..154 1..154 818 99.4 Plus
Dsec\GM11457-PA 232 GM11457-PA 87..198 7..122 217 43.1 Plus
Dsec\GM11560-PA 237 GM11560-PA 64..194 10..151 209 35.2 Plus
Dsec\GM25828-PA 147 GM25828-PA 4..110 9..119 196 40.5 Plus
Dsec\GM16815-PA 164 GM16815-PA 24..161 9..148 193 35.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10753-PA 154 GD10753-PA 1..154 1..154 818 99.4 Plus
Dsim\GD22227-PA 232 GD22227-PA 87..198 7..122 217 43.1 Plus
Dsim\GD17077-PA 237 GD17077-PA 64..194 10..151 209 35.2 Plus
Dsim\GD20402-PA 147 GD20402-PA 4..110 9..119 196 40.5 Plus
Dsim\GD23095-PA 164 GD23095-PA 24..161 9..148 196 35.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22224-PA 154 GJ22224-PA 1..154 1..154 807 97.4 Plus
Dvir\GJ17643-PA 240 GJ17643-PA 95..206 7..122 217 43.1 Plus
Dvir\GJ16559-PA 312 GJ16559-PA 99..207 10..122 204 40.7 Plus
Dvir\GJ22971-PA 147 GJ22971-PA 4..110 9..119 196 40.5 Plus
Dvir\GJ10109-PA 151 GJ10109-PA 3..114 5..120 190 36.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19485-PA 156 GK19485-PA 4..156 2..154 799 96.7 Plus
Dwil\GK23983-PA 235 GK23983-PA 90..201 7..122 217 43.1 Plus
Dwil\GK11688-PA 147 GK11688-PA 4..110 9..119 196 40.5 Plus
Dwil\GK14053-PA 151 GK14053-PA 3..114 5..120 190 36.2 Plus
Dwil\GK16336-PA 241 GK16336-PA 88..189 2..107 182 40.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12835-PA 154 GE12835-PA 1..154 1..154 812 98.7 Plus
Dyak\GE13339-PA 232 GE13339-PA 87..198 7..122 218 43.1 Plus
Dyak\GE17005-PA 248 GE17005-PA 75..205 10..151 212 35.9 Plus
Dyak\GE17550-PA 163 GE17550-PA 16..131 3..122 208 38 Plus
Dyak\eff-PA 147 GE26430-PA 4..110 9..119 196 40.5 Plus