Clone AT19571 Report

Search the DGRC for AT19571

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:195
Well:71
Vector:pOTB7
Associated Gene/TranscriptPPYR1-RA
Protein status:AT19571.pep: gold
Preliminary Size:750
Sequenced Size:1130

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15031 2002-01-01 Sim4 clustering to Release 2
CG15031 2002-05-18 Blastp of sequenced clone
CG15031 2003-01-01 Sim4 clustering to Release 3
PPYR1 2008-04-29 Release 5.5 accounting
PPYR1 2008-08-15 Release 5.9 accounting
PPYR1 2008-12-18 5.12 accounting

Clone Sequence Records

AT19571.complete Sequence

1130 bp (1130 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118699

> AT19571.complete
CGATTATATAATAAATTATATATCTGATTTTTACTTAAATTCGAGCTTTA
ACAATCGTTGCACCTTCGACGACAGTATGAACGTACCACTCGTAGCCCTC
ACCAAGGATCCCAAGATGAAGAAGTCACAGAAGAAGTCATCAATGGTGGC
CGTTCCCAAGATGTCGCAGAAACCACAGAAGGCAGCACGTCTATTTCAGC
CAAAGGTGGAGAACAAGATTACTTTGACCACTCCATTGACTGCACCCAAA
AAGGAACGGGTGAAGGACATCAAGGTGGCAGATCCTCTTGAGAAGGAAGT
AGAGTCAGTATTCGTTACAGTACCGAAAAACAAACTTTGCAAAACCAGAC
GCAATCGTCCTGGTGACCGACTCTTTGATCGCCGTTCCGGATCGAAACGC
ACTGGCGTAAAGGCGGTGGAAAAACGCAATGGAGCCGGGGCCCACAACTG
GGGATCCATCCAGCAGGAGATCGACTTGCGTCAGAGGACCAATTTGCGCA
CCTTCGAAGGGATGAAGTTACCAAAGGTATCGAGTTTCGTCTACGAGTAC
GATTCATCGGAGGAGACCGAACAATATACACTCGACGAGTGGCGTGCCAT
GCAGGCGCAGAAAAAGCAGGTTTTGAATAAGTTTATAATGTCTGATTTCG
GTACAAAGAAAGAAGTAACAGGGGGTTCTGAAGAAACTGTACGAGCCGAG
GGATCAGGAGACACAGACGACACCAAAGGATTGGACAAAACAGGAGGAAC
TGAACAAACAGGAAATACTGAAACAGGGGAGAGGTCTGCTGGATCTGGAG
AAACAGAAACAGCCGCAGCATCTGGAGTACCTGACGCATCTGGAGGATCT
GGAGGAACTGAGGGATCTGGAGGATTAGGAGGATCAGGAGAGCTGGAAGA
CGATGGCGAAGAATTAACCGCTGACCGCCCGTTGTACGTTGTTGATATCC
TGTTAAATTTCAACACTGATCAAGGTGTTATTCCTTATCGCTTAAAATTC
ATTTAATTTGCTTGCGTTTGCGTGTTACATAGTATTAAATCGTTCAAAAT
TAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT19571.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
PPYR1-RA 1062 PPYR1-RA 1..1057 1..1057 5270 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15133947..15135010 1055..1 5105 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15243857..15244913 1057..1 5270 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15251955..15253011 1057..1 5270 99.9 Minus
Blast to na_te.dros performed 2019-03-16 12:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 6177..6252 1026..948 126 65.8 Minus

AT19571.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:19:15 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15133947..15134111 891..1055 100 == Minus
chrX 15134174..15134986 25..837 99 -> Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:24 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..930 77..1006 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:47:03 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..930 77..1006 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:26:33 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..930 77..1006 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:39:25 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..930 77..1006 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:42:47 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..930 77..1006 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:22:54 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..1055 1..1055 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:47:03 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..1055 1..1055 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:26:33 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..1055 1..1055 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:39:25 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..1055 1..1055 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:42:47 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
PPYR1-RA 1..1055 1..1055 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:15 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
X 15243859..15244913 1..1055 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:15 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
X 15243859..15244913 1..1055 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:19:15 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
X 15243859..15244913 1..1055 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:26:33 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15137892..15138946 1..1055 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:11:45 Download gff for AT19571.complete
Subject Subject Range Query Range Percent Splice Strand
X 15251957..15253011 1..1055 99   Minus

AT19571.hyp Sequence

Translation from 1 to 1005

> AT19571.hyp
DYIINYISDFYLNSSFNNRCTFDDSMNVPLVALTKDPKMKKSQKKSSMVA
VPKMSQKPQKAARLFQPKVENKITLTTPLTAPKKERVKDIKVADPLEKEV
ESVFVTVPKNKLCKTRRNRPGDRLFDRRSGSKRTGVKAVEKRNGAGAHNW
GSIQQEIDLRQRTNLRTFEGMKLPKVSSFVYEYDSSEETEQYTLDEWRAM
QAQKKQVLNKFIMSDFGTKKEVTGGSEETVRAEGSGDTDDTKGLDKTGGT
EQTGNTETGERSAGSGETETAAASGVPDASGGSGGTEGSGGLGGSGELED
DGEELTADRPLYVVDILLNFNTDQGVIPYRLKFI*

AT19571.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
PPYR1-PA 309 CG15031-PA 1..309 26..334 1582 100 Plus
vig-PB 490 CG4170-PB 207..389 116..294 192 32.3 Plus
vig-PA 490 CG4170-PA 207..389 116..294 192 32.3 Plus
vig-PC 490 CG4170-PC 207..389 116..294 192 32.3 Plus
vig-PD 490 CG4170-PD 207..389 116..294 192 32.3 Plus

AT19571.pep Sequence

Translation from 76 to 1005

> AT19571.pep
MNVPLVALTKDPKMKKSQKKSSMVAVPKMSQKPQKAARLFQPKVENKITL
TTPLTAPKKERVKDIKVADPLEKEVESVFVTVPKNKLCKTRRNRPGDRLF
DRRSGSKRTGVKAVEKRNGAGAHNWGSIQQEIDLRQRTNLRTFEGMKLPK
VSSFVYEYDSSEETEQYTLDEWRAMQAQKKQVLNKFIMSDFGTKKEVTGG
SEETVRAEGSGDTDDTKGLDKTGGTEQTGNTETGERSAGSGETETAAASG
VPDASGGSGGTEGSGGLGGSGELEDDGEELTADRPLYVVDILLNFNTDQG
VIPYRLKFI*

AT19571.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15560-PA 536 GF15560-PA 248..354 91..179 172 42.1 Plus
Dana\GF21047-PA 384 GF21047-PA 196..288 98..174 149 43 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19413-PA 291 GG19413-PA 17..288 13..302 655 56.5 Plus
Dere\GG24224-PA 496 GG24224-PA 224..312 98..179 173 45.2 Plus
Dere\GG11363-PA 428 GG11363-PA 147..233 96..179 160 41.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18047-PA 345 GH18047-PA 126..214 96..179 165 42.1 Plus
Dgri\GH10817-PA 497 GH10817-PA 217..316 98..179 155 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
PPYR1-PA 309 CG15031-PA 1..309 1..309 1582 100 Plus
vig-PB 490 CG4170-PB 207..389 91..269 192 32.3 Plus
vig-PA 490 CG4170-PA 207..389 91..269 192 32.3 Plus
vig-PC 490 CG4170-PC 207..389 91..269 192 32.3 Plus
vig-PD 490 CG4170-PD 207..389 91..269 192 32.3 Plus
FDY-PE 317 CG41503-PE 131..317 96..271 175 28 Plus
FDY-PD 317 CG41503-PD 131..317 96..271 175 28 Plus
vig2-PD 412 CG11844-PD 144..230 96..179 170 42.5 Plus
vig2-PA 412 CG11844-PA 144..230 96..179 170 42.5 Plus
vig2-PC 412 CG11844-PC 144..230 96..179 170 42.5 Plus
vig2-PB 443 CG11844-PB 175..261 96..179 170 42.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17329-PA 476 GI17329-PA 208..302 98..179 170 43.2 Plus
Dmoj\GI23826-PA 335 GI23826-PA 128..213 96..179 159 39.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25726-PA 534 GL25726-PA 243..332 98..179 175 43.3 Plus
Dper\GL21903-PA 333 GL21903-PA 132..215 98..179 162 41.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18005-PA 518 GA18005-PA 243..332 98..179 177 43.3 Plus
Dpse\GA11231-PA 333 GA11231-PA 132..215 98..179 163 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15190-PA 262 GM15190-PA 1..257 1..256 1019 79 Plus
Dsec\GM22055-PA 316 GM22055-PA 1..210 1..209 861 80.5 Plus
Dsec\GM14534-PA 489 GM14534-PA 218..306 98..179 177 43.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15813-PA 165 GD15813-PA 1..154 1..153 587 76.6 Plus
Dsim\GD21176-PA 406 GD21176-PA 146..232 96..179 159 39.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23598-PA 303 GJ23598-PA 96..181 96..179 171 39.2 Plus
Dvir\GJ15963-PA 482 GJ15963-PA 212..303 98..179 169 42.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13399-PA 376 GK13399-PA 155..237 96..175 162 42.1 Plus
Dwil\GK18065-PA 503 GK18065-PA 224..322 98..179 159 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16059-PA 316 GE16059-PA 19..316 6..309 831 63.4 Plus
Dyak\GE19416-PA 486 GE19416-PA 215..303 98..179 181 46.2 Plus
Dyak\GE23560-PA 421 GE23560-PA 147..233 96..179 159 40.9 Plus