Clone AT19618 Report

Search the DGRC for AT19618

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:196
Well:18
Vector:pOTB7
Associated Gene/TranscriptCct5-RB
Protein status:AT19618.pep: gold
Sequenced Size:1773

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Cct5-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT19618.complete Sequence

1773 bp assembled on 2009-09-21

GenBank Submission: BT099778.1

> AT19618.complete
CAGATTCGTAGGCAAATGCCCTGCGTGCAATTGACGCACATTATGGCCGC
CCGCCAGATCGCGTCCACCCTGAAGACCTCTCTGGGTCCCAAGGGTCTGG
ACAAGATCATGGTCAGTCCCGACGGCGACGTGACTGTGACCAACGATGGC
GCCACCATCATGAAGCTGATGGAGGTTGACCACGAGATTGCCAAGCTGAT
GGTGCAGCTGTCGCAGTCACAGGACGACGAGATCGGCGATGGAACCACCG
GCGTTGTCGTGCTGGCCGGAGCACTCTTGGAGCAGGCCGAGGGACTGATC
GACAGGGGCATTCATCCCATTCGCATCGCCGATGGCTTTGAATTGGCCGC
CCAGTGCGCCATCAAGCAGCTGGACGCGATCGCCCAACCCTTCCCCGTGG
ACCCGAAGAACAAGGAGCCACTTATCCAGATCGCCATGACCACGCTGGGC
AGCAAGATCGTGAACAAGTGCCATCGTCAGATGGCCGAAATGGCTGTGGA
TGCTGTGCTGAATGTGGCCGACATTGAGAAGAAGGACGTGAACTTCGAGC
TCATCAAGATCGAGACCAAGGTGGGCGGTCGCATGGAGGACTCGATGCTG
GTGAAGGGTGTCATCGTTGACAAGACCCTCAGCCATTCGCAGATGCCCAA
GGAGCTAAGGAACGTCAAGCTGGCCATTCTCACCTGCCCGTTTGAGCCCC
CGAAGCCAAAGACCAAGCATAAGCTCGATGTTACCTCCGCGGAAGACTAC
AGGGCGCTGCGCGAGTACGAGCAGGAGAAGTTCACCCAGATGGTCAAGCA
GGTGAAGGACGCCGGCGCCACCCTTGCCATCTGCCAGTGGGGCTTCGATG
ATGAGGCCAACCACCTGTTGCTTCAGCAGGAGCTGCCCGCCGTGCGCTGG
GTTGGCGGTCCGGAGATCGAGCTGATTGCCATCGCCACCGGTGGACGCAT
CGTGCCGCGTTTCGAAGAGCTCACGCCTGAGAAACTAGGTGTTGCGGGAC
TCGTTCGCGAAATGGCATTCGGAACATCCAAGGACAAGATGCTGGTCATC
GAGGAGTGCAAAAACTCCAAGGCTGTGACCATCTTCTTGCGTGGAGGTAA
CGCCATGATCATTGCGGAGGCTAAGCGATCGATTCACGATGCCATCTGCG
TGGTGCGTTCGCTTGTGAAGGACTCGCGTATTGTTTACGGTGGTGGAGCT
GCCGAGATTAGCTGCTCGTTGGCTGTGGCCAAGGAGGCCGACCAACTGTC
CACGCTGGAGCAGTACGCCTTCCGCGCCTTCTCCGTGGCCCTGGAGAGCA
TTCCGCTGGCTCTGGCGGAGAACAGCGGCCTGCATCCCATCGAGACGTTG
TCGGAGCTGAAGGCCAGACAGGTGGCCGAGAAGAAGTCCAGCCTGGGTGT
CGACTGCATGCTGTCGGGTGATTCGGACATGAAGAGCCATAACGTGGTGG
AGTCGCTGCACTCGAAGAAGCAGCAGATTCTGCTCTCCACGCAGCTCGTC
AAGATGATACTCAAGATCGACGACGTGCGCTCCAAGAACGAAGGCGGCAT
GTAACGACCGCCCAGCAGCAGCATCATACATCAGATCTAGTTTCAGATTC
ACATCCCCACGCTTCGCTATCTCTTCACGAACAACACCCGCGTCAAGCCT
CATCTCTATGTACATCTGTATTAATTGTTTAATTTTATTAATCCACAAGT
TCTTTGGAAAAGAAGAAAATTACATTAAACAAGGGGCTATCCCTGTTCAA
ATACAAAAAAAAAAAAAAAAAAA

AT19618.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-RB 1763 Cct5-RB 1..1755 1..1755 8775 100 Plus
Cct5.a 2026 Cct5.a 296..2018 33..1755 8615 100 Plus
Cct5-RA 2093 Cct5-RA 351..2073 33..1755 8615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8062951..8063933 33..1015 4915 100 Plus
chr2R 21145070 chr2R 8063992..8064731 1015..1754 3700 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175736..12176718 33..1015 4915 100 Plus
2R 25286936 2R 12176777..12177517 1015..1755 3705 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12176935..12177917 33..1015 4915 100 Plus
2R 25260384 2R 12177976..12178716 1015..1755 3705 100 Plus
2R 25260384 2R 12176295..12176327 1..33 165 100 Plus
Blast to na_te.dros performed 2019-03-16 20:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..2858 1512..1577 114 63.6 Plus

AT19618.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:40:11 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8062311..8062343 1..33 100 -> Plus
chr2R 8062952..8063933 34..1015 100 -> Plus
chr2R 8063993..8064731 1016..1754 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:54:39 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1539 16..1554 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:31:44 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1539 16..1554 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:00 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1539 16..1554 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:53 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1539 16..1554 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-21 15:17:08 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1754 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:31:44 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1754 1..1754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:00 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1754 1..1754 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:53 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RB 1..1754 1..1754 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:11 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12175737..12176718 34..1015 100 -> Plus
2R 12176778..12177516 1016..1754 100   Plus
2R 12175096..12175128 1..33 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:11 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12175737..12176718 34..1015 100 -> Plus
2R 12176778..12177516 1016..1754 100   Plus
2R 12175096..12175128 1..33 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:40:11 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12175737..12176718 34..1015 100 -> Plus
2R 12176778..12177516 1016..1754 100   Plus
2R 12175096..12175128 1..33 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:00 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062601..8062633 1..33 100 -> Plus
arm_2R 8063242..8064223 34..1015 100 -> Plus
arm_2R 8064283..8065021 1016..1754 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:16:29 Download gff for AT19618.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12176936..12177917 34..1015 100 -> Plus
2R 12177977..12178715 1016..1754 100   Plus
2R 12176295..12176327 1..33 100 -> Plus

AT19618.pep Sequence

Translation from 0 to 1553

> AT19618.pep
QIRRQMPCVQLTHIMAARQIASTLKTSLGPKGLDKIMVSPDGDVTVTNDG
ATIMKLMEVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEGLI
DRGIHPIRIADGFELAAQCAIKQLDAIAQPFPVDPKNKEPLIQIAMTTLG
SKIVNKCHRQMAEMAVDAVLNVADIEKKDVNFELIKIETKVGGRMEDSML
VKGVIVDKTLSHSQMPKELRNVKLAILTCPFEPPKPKTKHKLDVTSAEDY
RALREYEQEKFTQMVKQVKDAGATLAICQWGFDDEANHLLLQQELPAVRW
VGGPEIELIAIATGGRIVPRFEELTPEKLGVAGLVREMAFGTSKDKMLVI
EECKNSKAVTIFLRGGNAMIIAEAKRSIHDAICVVRSLVKDSRIVYGGGA
AEISCSLAVAKEADQLSTLEQYAFRAFSVALESIPLALAENSGLHPIETL
SELKARQVAEKKSSLGVDCMLSGDSDMKSHNVVESLHSKKQQILLSTQLV
KMILKIDDVRSKNEGGM*

AT19618.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12298-PA 542 GF12298-PA 37..542 12..517 2619 98 Plus
Dana\GF20588-PA 321 GF20588-PA 1..321 164..517 1492 83.9 Plus
Dana\GF15661-PA 533 GF15661-PA 26..528 9..509 831 38 Plus
Dana\GF19192-PA 533 GF19192-PA 22..518 10..509 687 35.6 Plus
Dana\GF17067-PA 544 GF17067-PA 23..530 9..516 637 31.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20252-PA 542 GG20252-PA 37..542 12..517 2660 99.8 Plus
Dere\GG10247-PA 533 GG10247-PA 26..528 9..509 826 38.3 Plus
Dere\GG18286-PA 533 GG18286-PA 22..518 10..509 696 35.6 Plus
Dere\GG12510-PA 557 GG12510-PA 14..533 3..509 639 32.1 Plus
Dere\GG21785-PA 544 GG21785-PA 23..530 9..516 632 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19719-PA 541 GH19719-PA 37..540 12..515 2594 97.6 Plus
Dgri\GH11666-PA 533 GH11666-PA 26..528 9..509 809 37.8 Plus
Dgri\GH12396-PA 533 GH12396-PA 22..518 10..509 693 35.8 Plus
Dgri\GH18443-PA 557 GH18443-PA 14..533 3..509 642 32.2 Plus
Dgri\GH18159-PA 544 GH18159-PA 23..530 9..516 634 31.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
CCT5-PB 512 CG8439-PB 1..512 6..517 2564 100 Plus
CCT5-PA 542 CG8439-PA 37..542 12..517 2530 100 Plus
CCT4-PA 533 CG5525-PA 26..528 9..509 823 37.6 Plus
CCT2-PA 535 CG7033-PA 24..520 10..509 710 35.2 Plus
CCT1-PA 557 CG5374-PA 14..537 3..513 674 32 Plus
CCT1-PB 557 CG5374-PB 14..537 3..513 674 32 Plus
CCT3-PD 544 CG8977-PD 23..530 9..516 652 31.8 Plus
CCT3-PC 544 CG8977-PC 23..530 9..516 652 31.8 Plus
CCT3-PB 544 CG8977-PB 23..530 9..516 652 31.8 Plus
CCT3-PA 544 CG8977-PA 23..530 9..516 652 31.8 Plus
CCT7-PA 544 CG8351-PA 22..525 11..516 610 29 Plus
CCT6-PA 533 CG8231-PA 23..523 13..509 583 30.6 Plus
CCT8-PA 546 CG8258-PA 32..533 13..516 530 29.5 Plus
Hsp60A-PB 573 CG12101-PB 30..443 7..405 184 23.1 Plus
Hsp60A-PA 573 CG12101-PA 30..443 7..405 184 23.1 Plus
Hsp60C-PB 576 CG7235-PB 34..485 7..444 184 22.1 Plus
Hsp60C-PC 576 CG7235-PC 34..485 7..444 184 22.1 Plus
Hsp60C-PA 576 CG7235-PA 34..485 7..444 184 22.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20138-PA 541 GI20138-PA 37..540 12..515 2575 96.6 Plus
Dmoj\GI17110-PA 533 GI17110-PA 26..528 9..509 836 38.2 Plus
Dmoj\GI14726-PA 514 GI14726-PA 3..499 10..509 686 37 Plus
Dmoj\GI10788-PA 557 GI10788-PA 14..533 3..509 641 31.9 Plus
Dmoj\GI10112-PA 544 GI10112-PA 23..530 9..516 639 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11023-PA 542 GL11023-PA 37..542 12..517 2587 97 Plus
Dper\GL19739-PA 533 GL19739-PA 26..528 9..509 823 37.9 Plus
Dper\GL13090-PA 521 GL13090-PA 24..506 10..509 656 34.3 Plus
Dper\GL23334-PA 557 GL23334-PA 14..533 3..509 632 31.5 Plus
Dper\GL24528-PA 533 GL24528-PA 23..519 9..516 592 31.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21078-PA 542 GA21078-PA 37..542 12..517 2587 97 Plus
Dpse\GA18950-PA 533 GA18950-PA 26..528 9..509 822 37.9 Plus
Dpse\GA20046-PA 533 GA20046-PA 22..518 10..509 681 35.4 Plus
Dpse\GA21448-PA 544 GA21448-PA 23..530 9..516 636 31.8 Plus
Dpse\GA18830-PA 557 GA18830-PA 14..533 3..509 632 31.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21339-PA 542 GM21339-PA 37..542 12..517 2657 99.6 Plus
Dsec\GM26064-PA 533 GM26064-PA 26..528 9..509 825 38.1 Plus
Dsec\GM13717-PA 533 GM13717-PA 22..518 10..509 675 34.7 Plus
Dsec\GM23644-PA 557 GM23644-PA 14..533 3..509 641 32.1 Plus
Dsec\GM15181-PA 544 GM15181-PA 23..530 9..516 632 31.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22106-PA 516 GD22106-PA 26..511 9..509 748 35.9 Plus
Dsim\T-cp1-PA 557 GD18453-PA 14..533 3..509 641 32.1 Plus
Dsim\GD19118-PA 544 GD19118-PA 23..530 9..516 632 31.8 Plus
Dsim\GD24772-PA 449 GD24772-PA 1..434 70..509 544 33 Plus
Dsim\GD10130-PA 546 GD10130-PA 32..533 13..516 493 29.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19908-PA 541 GJ19908-PA 37..540 12..515 2583 97.2 Plus
Dvir\GJ16148-PA 533 GJ16148-PA 26..528 9..509 828 37.8 Plus
Dvir\GJ19440-PA 533 GJ19440-PA 22..518 10..509 706 36.4 Plus
Dvir\GJ14386-PA 557 GJ14386-PA 14..533 3..509 642 31.9 Plus
Dvir\GJ23334-PA 544 GJ23334-PA 23..530 9..516 628 31.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23011-PA 542 GK23011-PA 37..542 12..517 2605 97.4 Plus
Dwil\GK14617-PA 533 GK14617-PA 26..528 9..509 831 37.9 Plus
Dwil\GK16400-PA 533 GK16400-PA 22..518 10..509 680 35.8 Plus
Dwil\GK14439-PA 557 GK14439-PA 14..533 3..509 647 32.4 Plus
Dwil\GK13436-PA 544 GK13436-PA 23..530 9..516 629 31.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12411-PA 542 GE12411-PA 37..542 12..517 2652 99.4 Plus
Dyak\GE12130-PA 533 GE12130-PA 26..528 9..509 826 38.3 Plus
Dyak\GE15818-PA 533 GE15818-PA 22..518 10..509 695 35.6 Plus
Dyak\GE24032-PA 557 GE24032-PA 14..533 3..509 640 32.1 Plus
Dyak\GE24588-PA 544 GE24588-PA 23..530 9..516 632 31.8 Plus

AT19618.hyp Sequence

Translation from 0 to 1553

> AT19618.hyp
QIRRQMPCVQLTHIMAARQIASTLKTSLGPKGLDKIMVSPDGDVTVTNDG
ATIMKLMEVDHEIAKLMVQLSQSQDDEIGDGTTGVVVLAGALLEQAEGLI
DRGIHPIRIADGFELAAQCAIKQLDAIAQPFPVDPKNKEPLIQIAMTTLG
SKIVNKCHRQMAEMAVDAVLNVADIEKKDVNFELIKIETKVGGRMEDSML
VKGVIVDKTLSHSQMPKELRNVKLAILTCPFEPPKPKTKHKLDVTSAEDY
RALREYEQEKFTQMVKQVKDAGATLAICQWGFDDEANHLLLQQELPAVRW
VGGPEIELIAIATGGRIVPRFEELTPEKLGVAGLVREMAFGTSKDKMLVI
EECKNSKAVTIFLRGGNAMIIAEAKRSIHDAICVVRSLVKDSRIVYGGGA
AEISCSLAVAKEADQLSTLEQYAFRAFSVALESIPLALAENSGLHPIETL
SELKARQVAEKKSSLGVDCMLSGDSDMKSHNVVESLHSKKQQILLSTQLV
KMILKIDDVRSKNEGGM*

AT19618.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-PB 512 CG8439-PB 1..512 6..517 2564 100 Plus
Cct5-PA 542 CG8439-PA 37..542 12..517 2530 100 Plus
CG5525-PA 533 CG5525-PA 26..528 9..509 823 37.6 Plus
CG7033-PA 535 CG7033-PA 24..520 10..509 710 35.2 Plus
T-cp1-PA 557 CG5374-PA 14..537 3..513 674 32 Plus