Clone AT19932 Report

Search the DGRC for AT19932

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:199
Well:32
Vector:pOTB7
Associated Gene/TranscriptCG17717-RB
Protein status:AT19932.pep: gold
Preliminary Size:974
Sequenced Size:1094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17717 2002-01-01 Sim4 clustering to Release 2
CG17717 2002-01-03 Blastp of sequenced clone
CG17717 2003-01-01 Sim4 clustering to Release 3
CG17717 2008-04-29 Release 5.5 accounting
CG17717 2008-08-15 Release 5.9 accounting
CG17717 2008-12-18 5.12 accounting

Clone Sequence Records

AT19932.complete Sequence

1094 bp (1094 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075239

> AT19932.complete
CTAACGTTCAAGTTGTATGTAATATGTTGCAGAGAAATTCGGTGTAAAAA
TTTGTTTTCTCAAAATTTGTTTTGTAACGCTCACAAGTGGACAAACGCCA
CCAACCGCCGCCAAGCAGTTGTCAATATCATTGCAAGCAGTGCAGGCGCA
CCACACAATAGCCGTTGCTTACCCGCAACAACATCTGTGTACCCGAGCAA
TATGTCGCATCATCAACACGTTCTTTCCGAGGCCGCTGCCCTTCGTCTGA
TTAACGGTCTGGAGTCAGCCGGCAATGCCACAATGCCACTCGGCGCTCAG
CCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTCGTCGCAAATCGTAGC
ATCGGCACATGGCACGCCCACTGCATCCACGGCAGCACTGGAAATATCCT
CAGCACGACAACGGATGCTGCGAAGTCACCTACAGGAGAGCCTCCATTCG
GCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCGCTGGAACCGCAACGA
CATGGAGATCATCAAATGTCCCTGCAACTGCAAGGGCAGCGTGTGCTTGA
AGCGCTGGATCATGCACAGGCGGGATAATCGCTGTGAGATCTGCAATGCG
GTCTTTAATATCGCGGAGGAGCGGGCCAGTCTGAAGCAAATGATCCGAAC
CTTCTGCTGCGGCCGTTGTTGCGGCCTGATTGTGAAGCATCTGCTATTTA
GCGCCTCGCTAATGCCACTAGCCCATATCATCTTGCAGCAGGTGCTGCAG
TGCATGGATAATATGAATCAGGGCAGCACCGATCAGTTAACCGTCCAGGA
GGTGTTTGTCGCCTCTTGTGCCCTTCTGACCTCCAGTGCACTTTTCTTCC
ACTTCTTTGAGTTTGTCACCACACGATTTATGCTCATCCGGAACATTCTC
AGCCACTGGTGGATGTTTGGCAGCACCTCCGATTTTGAGCTGGTGGAGAT
TGAGGATGATTCCATCGATTTTTTCGATGATTAGCCGATAATATGGACTG
ATATAAAAATGATGATAATGGAAGGCAGAGCAGCATTCATGTTTACAGTT
AAATAAATTATTTTATTATTTCATAAAAAAAAAAAAAAAAAAAA

AT19932.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-RB 1075 CG17717-RB 1..1075 1..1075 5330 99.7 Plus
CG17717-RA 1126 CG17717-RA 34..580 1..547 2690 99.4 Plus
CG17717-RA 1126 CG17717-RA 594..1126 543..1075 2650 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6481575..6482117 1..543 2715 100 Plus
chrX 22417052 chrX 6482595..6482930 739..1074 1680 100 Plus
chrX 22417052 chrX 6482334..6482535 543..744 1010 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589290..6589832 1..543 2685 99.6 Plus
X 23542271 X 6590311..6590647 739..1075 1670 99.7 Plus
X 23542271 X 6590050..6590251 543..744 1010 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6597388..6597930 1..543 2685 99.6 Plus
X 23527363 X 6598409..6598745 739..1075 1670 99.7 Plus
X 23527363 X 6598148..6598349 543..744 1010 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:27:26 has no hits.

AT19932.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:28:32 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6482598..6482903 742..1047 100 -> Plus
chrX 6481575..6482117 1..543 100 -> Plus
chrX 6482335..6482532 544..741 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:14:46 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 202..984 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:34 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 202..984 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:48:08 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 202..984 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:19 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 202..984 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:32 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..783 202..984 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:22:14 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..1074 1..1074 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:34 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..1074 1..1074 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:48:08 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..1074 1..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:19 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..1074 1..1074 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:32 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RB 1..1074 1..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:32 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589290..6589832 1..543 99 -> Plus
X 6590051..6590248 544..741 100 -> Plus
X 6590314..6590646 742..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:32 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589290..6589832 1..543 99 -> Plus
X 6590051..6590248 544..741 100 -> Plus
X 6590314..6590646 742..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:32 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589290..6589832 1..543 99 -> Plus
X 6590051..6590248 544..741 100 -> Plus
X 6590314..6590646 742..1074 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:48:08 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483323..6483865 1..543 99 -> Plus
arm_X 6484084..6484281 544..741 100 -> Plus
arm_X 6484347..6484679 742..1074 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:16 Download gff for AT19932.complete
Subject Subject Range Query Range Percent Splice Strand
X 6597388..6597930 1..543 99 -> Plus
X 6598149..6598346 544..741 100 -> Plus
X 6598412..6598744 742..1074 99   Plus

AT19932.hyp Sequence

Translation from 1 to 983

> AT19932.hyp
LTFKLYVICCREIRCKNLFSQNLFCNAHKWTNATNRRQAVVNIIASSAGA
PHNSRCLPATTSVYPSNMSHHQHVLSEAAALRLINGLESAGNATMPLGAQ
PPQSAAAEAICSSQIVASAHGTPTASTAALEISSARQRMLRSHLQESLHS
ANESGNSCRICRWNRNDMEIIKCPCNCKGSVCLKRWIMHRRDNRCEICNA
VFNIAEERASLKQMIRTFCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQ
CMDNMNQGSTDQLTVQEVFVASCALLTSSALFFHFFEFVTTRFMLIRNIL
SHWWMFGSTSDFELVEIEDDSIDFFDD*

AT19932.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 260 CG17717-PB 1..260 68..327 1370 100 Plus
CG17717-PA 266 CG17717-PA 1..266 68..327 1353 97.7 Plus

AT19932.pep Sequence

Translation from 201 to 983

> AT19932.pep
MSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAEAICSSQIVA
SAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSCRICRWNRND
MEIIKCPCNCKGSVCLKRWIMHRRDNRCEICNAVFNIAEERASLKQMIRT
FCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCMDNMNQGSTDQLTVQE
VFVASCALLTSSALFFHFFEFVTTRFMLIRNILSHWWMFGSTSDFELVEI
EDDSIDFFDD*

AT19932.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22266-PA 292 GF22266-PA 1..292 1..258 1011 69.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19596-PA 277 GG19596-PA 1..277 1..260 1124 79.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12688-PA 245 GH12688-PA 6..245 5..258 841 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PB 260 CG17717-PB 1..260 1..260 1370 100 Plus
CG17717-PA 266 CG17717-PA 1..266 1..260 1353 97.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16362-PA 302 GI16362-PA 116..302 78..258 854 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14305-PA 277 GL14305-PA 1..252 1..245 817 63.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14623-PA 265 GA14623-PA 1..265 1..258 854 63.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12500-PA 273 GM12500-PA 1..273 1..260 1254 90.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16805-PA 273 GD16805-PA 1..273 1..260 1248 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:02:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16731-PA 158 GJ16731-PA 11..158 111..255 669 81.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20143-PA 264 GK20143-PA 1..264 1..258 851 67.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16756-PA 273 GE16756-PA 1..273 1..260 1103 82.1 Plus