Clone AT20169 Report

Search the DGRC for AT20169

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:201
Well:69
Vector:pOTB7
Associated Gene/TranscriptIme4-RA
Protein status:AT20169.pep: gold
Preliminary Size:1827
Sequenced Size:1954

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5933 2002-01-01 Sim4 clustering to Release 2
CG5933 2002-04-21 Blastp of sequenced clone
CG5933 2003-01-01 Sim4 clustering to Release 3
CG5933 2008-04-29 Release 5.5 accounting
CG5933 2008-08-15 Release 5.9 accounting
CG5933 2008-12-18 5.12 accounting

Clone Sequence Records

AT20169.complete Sequence

1954 bp (1954 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113286

> AT20169.complete
AAACAATGGCAGATGCGTGGGACATAAAATCACTCAAGACAAAGCGGAAC
ACGCTCCGCGAGAAGCTGGAAAAGCGCAAGAAGGAGCGCATTGAGATTCT
CTCGGACATTCAGGAGGATCTGACGAATCCCAAAAAGGAACTCGTTGAGG
CTGACTTGGAAGTACAGAAGGAGGTGCTGCAGGCCCTCAGTTCCTGCTCC
CTGGCCCTGCCCATTGTCTCCACACAGGTGGTGGAAAAGATTGCCGGCAG
CAGCCTGGAGATGGTGAACTTTATTCTAGGCAAACTGGCCAACCAGGGTG
CAATTGTGATCCGGAACGTGACCATCGGCACCGAGGCCGGCTGCGAAATC
ATCTCTGTGCAGCCCAAGGAGCTGAAGGAGATCCTGGAAGACACCAACGA
TACGTGTCAGCAAAAGGAGGAGGAGGCCAAGAGAAAGTTGGAAGTCGACG
ATGTTGATCAGCCACAGGAGAAGACAATAAAACTGGAGTCCACTGTAGCG
CGGAAAGAGTCCACAAGCCTGGATGCTCCGGACGACATTATGATGCTGCT
ATCCATGCCTTCCACCCGCGAAAAACAGAGTAAGCAGGTGGGCGAGGAGA
TTCTTGAGCTGCTTACTAAGCCTACGGCCAAAGAGCGATCCGTGGCTGAG
AAGTTTAAGTCCCACGGCGGAGCGCAGGTCATGGAGTTTTGCTCCCACGG
CACAAAAGTCGAGTGCCTGAAGGCTCAACAAGCCACCGCCGAGATGGCGG
CCAAAAAGAAACAAGAAAGAAGAGACGAAAAGGAGCTTCGCCCGGATGTT
GATGCGGGCGAAAACGTCACCGGTAAGGTACCCAAGACAGAATCGGCAGC
CGAGGATGGAGAAATCATTGCGGAGGTTATAAACAATTGCGAAGCCGAGT
CGCAGGAATCCACCGATGGCAGCGATACCTGCAGCAGTGAGACAACAGAC
AAGTGCACCAAACTGCATTTCAAAAAGATCATCCAGGCTCACACGGACGA
ATCTCTGGGGGACTGCAGTTTCCTAAACACCTGCTTCCACATGGCCACCT
GCAAGTACGTGCACTATGAGGTGGACACCCTGCCGCATATAAACACAAAC
AAGCCCACGGATGTGAAAACCAAATTGAGCCTCAAGCGCAGCGTAGACTC
CAGTTGCACGCTCTATCCGCCGCAATGGATTCAATGCGACCTACGCTTCT
TGGACATGACGGTCCTGGGAAAGTTCGCTGTGGTGATGGCCGATCCTCCC
TGGGATATCCACATGGAATTGCCCTACGGCACAATGTCGGACGATGAAAT
GAGAGCACTGGGCGTGCCGGCACTTCAGGATGACGGCTTGATCTTTCTGT
GGGTCACTGGACGAGCCATGGAACTTGGCCGCGACTGCCTCAAGTTGTGG
GGCTATGAGCGCGTGGACGAACTCATCTGGGTAAAGACCAACCAACTGCA
GCGAATTATTCGCACTGGGCGCACTGGTCATTGGCTAAACCACGGCAAGG
AGCACTGTTTGGTGGGCATGAAAGGCAATCCCACAAACCTGAACCGCGGA
CTCGATTGCGATGTGATCGTTGCGGAGGTGCGGGCCACCTCTCACAAGCC
GGATGAGATTTATGGTATTATCGAGCGTCTAAGCCCGGGTACTCGCAAGA
TCGAGCTCTTTGGGCGTCCGCACAACATCCAACCGAACTGGATAACCCTG
GGAAACCAACTGGATGGCATTCGACTGGTGGATCCGGAGCTAATTACGCA
GTTCCAGAAGCGTTATCCAGATGGTAACTGCATGTCGCCAGCTTCTGCCA
ATGCGGCGTCGATCAATGGAATACAAAAGTAGGATTAAAATAGTATTTGC
TGTATGAATTGAGACCTCGACAAGCCAGAGTTGTGTACAGACTCAATTAT
AGTAAGATAAATTATTATTAAAGCTTTTACAAACCGAAAAAAAAAAAAAA
AAAA

AT20169.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5933-RA 2142 CG5933-RA 138..2076 1..1939 9665 99.8 Plus
CG5933.b 2021 CG5933.b 86..2021 1..1936 9650 99.8 Plus
CG5933.a 2019 CG5933.a 86..2019 1..1936 9595 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19856145..19857642 439..1936 7460 99.9 Plus
chr3R 27901430 chr3R 19855782..19856076 144..438 1475 100 Plus
chr3R 27901430 chr3R 19855577..19855725 1..149 730 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24032760..24034260 439..1939 7475 99.9 Plus
3R 32079331 3R 24032397..24032691 144..438 1475 100 Plus
3R 32079331 3R 24032192..24032340 1..149 730 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23773591..23775091 439..1939 7475 99.8 Plus
3R 31820162 3R 23773228..23773522 144..438 1475 100 Plus
3R 31820162 3R 23773023..23773171 1..149 730 99.3 Plus
Blast to na_te.dros performed on 2019-03-15 15:18:03 has no hits.

AT20169.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:07 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19855577..19855720 1..144 100 -> Plus
chr3R 19855783..19856076 145..438 100 -> Plus
chr3R 19856145..19857642 439..1936 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:07 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
CG5933-RA 1..1827 6..1832 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:38 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
CG5933-RA 1..1827 6..1832 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:22:36 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
Ime4-RA 1..1827 6..1832 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:50:58 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
CG5933-RA 1..1827 6..1832 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:38 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
Ime4-RA 1..1827 6..1832 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:37:35 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
CG5933-RA 1..1832 1..1832 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:38 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
CG5933-RA 1..1936 1..1936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:22:36 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
Ime4-RA 36..1971 1..1936 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:50:59 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
CG5933-RA 1..1832 1..1832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:38 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
Ime4-RA 36..1971 1..1936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:07 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24032192..24032335 1..144 100 -> Plus
3R 24032398..24032691 145..438 100 -> Plus
3R 24032760..24034257 439..1936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:07 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24032192..24032335 1..144 100 -> Plus
3R 24032398..24032691 145..438 100 -> Plus
3R 24032760..24034257 439..1936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:07 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24032192..24032335 1..144 100 -> Plus
3R 24032398..24032691 145..438 100 -> Plus
3R 24032760..24034257 439..1936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:22:36 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19857914..19858057 1..144 100 -> Plus
arm_3R 19858120..19858413 145..438 100 -> Plus
arm_3R 19858482..19859979 439..1936 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:22:55 Download gff for AT20169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23773229..23773522 145..438 100 -> Plus
3R 23773591..23775088 439..1936 99   Plus
3R 23773023..23773166 1..144 100 -> Plus

AT20169.hyp Sequence

Translation from 2 to 1831

> AT20169.hyp
TMADAWDIKSLKTKRNTLREKLEKRKKERIEILSDIQEDLTNPKKELVEA
DLEVQKEVLQALSSCSLALPIVSTQVVEKIAGSSLEMVNFILGKLANQGA
IVIRNVTIGTEAGCEIISVQPKELKEILEDTNDTCQQKEEEAKRKLEVDD
VDQPQEKTIKLESTVARKESTSLDAPDDIMMLLSMPSTREKQSKQVGEEI
LELLTKPTAKERSVAEKFKSHGGAQVMEFCSHGTKVECLKAQQATAEMAA
KKKQERRDEKELRPDVDAGENVTGKVPKTESAAEDGEIIAEVINNCEAES
QESTDGSDTCSSETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATC
KYVHYEVDTLPHINTNKPTDVKTKLSLKRSVDSSCTLYPPQWIQCDLRFL
DMTVLGKFAVVMADPPWDIHMELPYGTMSDDEMRALGVPALQDDGLIFLW
VTGRAMELGRDCLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGKE
HCLVGMKGNPTNLNRGLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKI
ELFGRPHNIQPNWITLGNQLDGIRLVDPELITQFQKRYPDGNCMSPASAN
AASINGIQK*

AT20169.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ime4-PA 608 CG5933-PA 1..608 2..609 3162 100 Plus
CG7818-PA 397 CG7818-PA 135..365 386..595 253 29.3 Plus

AT20169.pep Sequence

Translation from 5 to 1831

> AT20169.pep
MADAWDIKSLKTKRNTLREKLEKRKKERIEILSDIQEDLTNPKKELVEAD
LEVQKEVLQALSSCSLALPIVSTQVVEKIAGSSLEMVNFILGKLANQGAI
VIRNVTIGTEAGCEIISVQPKELKEILEDTNDTCQQKEEEAKRKLEVDDV
DQPQEKTIKLESTVARKESTSLDAPDDIMMLLSMPSTREKQSKQVGEEIL
ELLTKPTAKERSVAEKFKSHGGAQVMEFCSHGTKVECLKAQQATAEMAAK
KKQERRDEKELRPDVDAGENVTGKVPKTESAAEDGEIIAEVINNCEAESQ
ESTDGSDTCSSETTDKCTKLHFKKIIQAHTDESLGDCSFLNTCFHMATCK
YVHYEVDTLPHINTNKPTDVKTKLSLKRSVDSSCTLYPPQWIQCDLRFLD
MTVLGKFAVVMADPPWDIHMELPYGTMSDDEMRALGVPALQDDGLIFLWV
TGRAMELGRDCLKLWGYERVDELIWVKTNQLQRIIRTGRTGHWLNHGKEH
CLVGMKGNPTNLNRGLDCDVIVAEVRATSHKPDEIYGIIERLSPGTRKIE
LFGRPHNIQPNWITLGNQLDGIRLVDPELITQFQKRYPDGNCMSPASANA
ASINGIQK*

AT20169.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17033-PA 608 GF17033-PA 1..608 1..608 2858 90.7 Plus
Dana\GF14632-PA 397 GF14632-PA 135..365 385..594 255 29.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11246-PA 608 GG11246-PA 1..608 1..608 3183 97.5 Plus
Dere\GG10531-PA 397 GG10531-PA 135..365 385..594 255 29.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18483-PA 611 GH18483-PA 1..609 1..603 2671 83.9 Plus
Dgri\GH11588-PA 401 GH11588-PA 139..369 385..594 241 28.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Mettl3-PA 608 CG5933-PA 1..608 1..608 3162 100 Plus
Mettl14-PA 397 CG7818-PA 135..365 385..594 253 29.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24144-PA 617 GI24144-PA 1..616 1..607 2667 83.3 Plus
Dmoj\GI17157-PA 405 GI17157-PA 148..367 389..590 254 30.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18735-PA 397 GL18735-PA 135..341 385..569 251 30.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19241-PA 612 GA19241-PA 1..611 1..607 2823 88.4 Plus
Dpse\GA20607-PA 397 GA20607-PA 135..341 385..569 251 30.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26549-PA 584 GM26549-PA 1..584 1..608 3059 94.9 Plus
Dsec\GM16880-PA 397 GM16880-PA 135..365 385..594 255 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21054-PA 431 GD21054-PA 1..425 1..425 2180 97.6 Plus
Dsim\GD21055-PA 154 GD21055-PA 1..154 455..608 851 100 Plus
Dsim\GD23521-PA 397 GD23521-PA 135..365 385..594 255 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24659-PA 614 GJ24659-PA 1..613 1..607 2713 83.8 Plus
Dvir\GJ17661-PA 406 GJ17661-PA 144..350 385..569 247 30.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14179-PA 608 GK14179-PA 8..608 7..608 2823 89.6 Plus
Dwil\GK23852-PA 402 GK23852-PA 140..366 389..594 257 30.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23438-PA 608 GE23438-PA 1..608 1..608 3185 97.9 Plus
Dyak\GE18751-PA 397 GE18751-PA 135..365 385..594 254 29.7 Plus