Clone AT20211 Report

Search the DGRC for AT20211

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:202
Well:11
Vector:pOTB7
Associated Gene/TranscriptCG10516-RA
Protein status:AT20211.pep: gold
Preliminary Size:1113
Sequenced Size:1427

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10516 2002-01-01 Sim4 clustering to Release 2
CG10516 2003-01-01 Sim4 clustering to Release 3
CG10516 2003-08-12 Blastp of sequenced clone
CG10516 2008-04-29 Release 5.5 accounting
CG10516 2008-08-15 Release 5.9 accounting
CG10516 2008-12-18 5.12 accounting

Clone Sequence Records

AT20211.complete Sequence

1427 bp (1427 high quality bases) assembled on 2003-08-12

GenBank Submission: BT010318

> AT20211.complete
GTCGGCAGCGATGCCGACGTCTATTTACAACGCATCGTTTTGTTTATTGT
TCAGTCAGATCAGAGTAATGTGCTTATATATGAGGCTGCAGCTGGTTTAA
CTGGAAACATTTGTGGTCCGTCGACTGCTCGAGATCATTGTACACGGCTG
ACACAATTCATTACAAAGCAACCGAAGGGAAACCAGTGAAGAGGAACCAG
TGCCAGCATGCTGCTGCCCCCGTACCAAGAAGCCTGCAATCCCGGCTTCT
GTGATTGCCCGTTTCCCAACTCCATTGAGGTTACCAACCACAAGGGCCAT
ATACCCGACCTGGTCAGGTGCCAATGCGGCGAGGATGAGTCCGGAAACGT
GAATGCCTGGCGGTGGCACGCCACTGATGAATCGGATGCCGTGGTCACCG
ACCGGGACATCATCTTCCATCCCACCTACAGTCAGGGCACGGCGATTGTG
AGAGGGGAACAGGCCCTAAAAACAAACATGGTGCACTTTTGGGAGATGCG
CGTCATCACGACTCTGGCCGGCACGGATGTGATGTTCGGCATCGGCACGG
AAAGCGTTAATCTAGGGCAGTTCAAGTTTCACTTTGTCTCGGCCCTGGGC
ACCAATGCCCAGTCCTGGGGCTTTTCGTATTCCGGAAGGATTCAGCACTG
TGGCGAGTTACTGCCCTACGGCCAGAAGTTCTCGCAGGGCTGCTTGATTG
GTGTCTGTTTGGATCGAACGCGTGGGCACTTGGAGTTCTATTTGAACCGC
AGATCGCTGGGAGTGGCCTACACCAATGTCCCGACGGATCCGGATGTCAA
AATATATCCCATGGTCTGCTCCACAGCCGCGAAGTCCGTAATTAGGCTGA
TCAACTGCACTTCGCAACCAGTCACACTGCAGCTGCGATCTTTCCAAGCA
TTGTCCAGGCAGCCGCTCAAATTGGCCGAACTGCGTCAAATGCCGGGTCT
CAAAGGCATCATGCAATCCTACTGGTTCCTGGCACCGCCAATTCGTTACT
CCCGGAACTCCCGCGAAAACGAATTGGATCTGGGCGACGAAGCAGTGCTC
TCAAGCTCCAAGCAACGGTTGAGGCGCAAACAAAAGTACCGAGAAACCGA
CGATGCGGCTGTTGATGAGGACGACTTGTACGCCAATGCACACAAAATCA
CGTTGCGAAGCAGTGATAGCGGCGACGAGGAGCACACCGCTAGTGTCCAC
GAGATGTGCGACGAGTACTTCCACTACCTGCTTTAGTCTTACCAACCATA
TCAATATGTTTAAGTATGCATTTATTTGAAGGAGCTTAGTTATAAATGTA
ATAAGTAGAAATGCTGAAGCTAATTTTAATTACTGTAAGACTTCCTAAAA
TACAACTTATTAATTAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

AT20211.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10516-RA 1511 CG10516-RA 104..1476 1..1373 6805 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15958814..15959376 531..1093 2800 99.8 Plus
chr3L 24539361 chr3L 15957979..15958509 1..531 2610 99.4 Plus
chr3L 24539361 chr3L 15959440..15959718 1092..1370 1350 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15968998..15969560 531..1093 2815 100 Plus
3L 28110227 3L 15968163..15968693 1..531 2610 99.4 Plus
3L 28110227 3L 15969624..15969905 1092..1373 1395 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15962098..15962660 531..1093 2815 100 Plus
3L 28103327 3L 15961263..15961793 1..531 2610 99.4 Plus
3L 28103327 3L 15962724..15963005 1092..1373 1395 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 11:34:18 has no hits.

AT20211.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:35:11 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15957979..15958509 1..531 99 -> Plus
chr3L 15958815..15959376 532..1093 99 -> Plus
chr3L 15959442..15959718 1094..1370 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:11 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1029 208..1236 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:44:40 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1029 208..1236 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:07 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1029 208..1236 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:12:37 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1029 208..1236 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:38:32 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1029 208..1236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:09:12 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1278 1..1278 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:44:40 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1278 1..1278 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:07 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1329 42..1370 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:12:37 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1278 1..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:38:32 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10516-RA 1..1329 42..1370 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:11 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15969626..15969902 1094..1370 99   Plus
3L 15968163..15968693 1..531 99 -> Plus
3L 15968999..15969560 532..1093 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:11 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15969626..15969902 1094..1370 99   Plus
3L 15968163..15968693 1..531 99 -> Plus
3L 15968999..15969560 532..1093 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:35:11 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15969626..15969902 1094..1370 99   Plus
3L 15968163..15968693 1..531 99 -> Plus
3L 15968999..15969560 532..1093 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:07 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15961263..15961793 1..531 99 -> Plus
arm_3L 15962099..15962660 532..1093 100 -> Plus
arm_3L 15962726..15963002 1094..1370 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:47:13 Download gff for AT20211.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15961263..15961793 1..531 99 -> Plus
3L 15962099..15962660 532..1093 100 -> Plus
3L 15962726..15963002 1094..1370 99   Plus

AT20211.pep Sequence

Translation from 207 to 1235

> AT20211.pep
MLLPPYQEACNPGFCDCPFPNSIEVTNHKGHIPDLVRCQCGEDESGNVNA
WRWHATDESDAVVTDRDIIFHPTYSQGTAIVRGEQALKTNMVHFWEMRVI
TTLAGTDVMFGIGTESVNLGQFKFHFVSALGTNAQSWGFSYSGRIQHCGE
LLPYGQKFSQGCLIGVCLDRTRGHLEFYLNRRSLGVAYTNVPTDPDVKIY
PMVCSTAAKSVIRLINCTSQPVTLQLRSFQALSRQPLKLAELRQMPGLKG
IMQSYWFLAPPIRYSRNSRENELDLGDEAVLSSSKQRLRRKQKYRETDDA
AVDEDDLYANAHKITLRSSDSGDEEHTASVHEMCDEYFHYLL*

AT20211.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24101-PA 339 GF24101-PA 3..339 5..342 1580 84.6 Plus
Dana\GF15713-PA 304 GF15713-PA 68..269 46..245 283 35 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15936-PA 342 GG15936-PA 1..342 1..342 1800 96.2 Plus
Dere\GG25044-PA 301 GG25044-PA 60..261 46..245 288 35.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14773-PA 345 GH14773-PA 9..345 7..342 1338 74.6 Plus
Dgri\GH11484-PA 283 GH11484-PA 38..236 39..235 282 37.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10516-PA 342 CG10516-PA 1..342 1..342 1836 100 Plus
SP555-PD 293 CG14041-PD 59..261 45..245 291 36.7 Plus
SP555-PB 293 CG14041-PB 59..261 45..245 291 36.7 Plus
SP555-PC 301 CG14041-PC 59..261 45..245 291 36.7 Plus
SP555-PA 301 CG14041-PA 59..261 45..245 291 36.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11875-PA 342 GI11875-PA 14..342 12..342 1397 77.6 Plus
Dmoj\GI16979-PA 316 GI16979-PA 79..280 46..245 279 33.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12741-PA 163 GL12741-PA 1..159 1..159 684 75.5 Plus
Dper\GL12742-PA 155 GL12742-PA 2..155 194..342 641 79.9 Plus
Dper\GL26545-PA 292 GL26545-PA 59..260 46..245 285 34.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28209-PA 347 GA28209-PA 1..347 1..342 1515 79.8 Plus
Dpse\GA12721-PA 292 GA12721-PA 59..260 46..245 285 34.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25566-PA 314 GM25566-PA 1..314 1..342 1655 90.9 Plus
Dsec\GM18519-PA 301 GM18519-PA 52..261 12..245 300 34.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17641-PA 141 GD17641-PA 1..141 202..342 737 98.6 Plus
Dsim\GD14581-PA 109 GD14581-PA 1..89 1..89 484 97.8 Plus
Dsim\GD12021-PA 301 GD12021-PA 55..261 17..245 299 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13571-PA 342 GJ13571-PA 14..342 12..342 1431 78.9 Plus
Dvir\GJ17226-PA 299 GJ17226-PA 66..252 51..235 268 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24452-PA 343 GK24452-PA 1..343 1..342 1419 77.3 Plus
Dwil\GK24858-PA 301 GK24858-PA 68..266 46..245 280 35 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23167-PA 342 GE23167-PA 1..342 1..342 1822 97.4 Plus
Dyak\GE22870-PA 141 GE22870-PA 1..141 202..342 729 97.2 Plus
Dyak\GE11313-PA 303 GE11313-PA 62..263 46..245 289 35.9 Plus

AT20211.hyp Sequence

Translation from 207 to 1235

> AT20211.hyp
MLLPPYQEACNPGFCDCPFPNSIEVTNHKGHIPDLVRCQCGEDESGNVNA
WRWHATDESDAVVTDRDIIFHPTYSQGTAIVRGEQALKTNMVHFWEMRVI
TTLAGTDVMFGIGTESVNLGQFKFHFVSALGTNAQSWGFSYSGRIQHCGE
LLPYGQKFSQGCLIGVCLDRTRGHLEFYLNRRSLGVAYTNVPTDPDVKIY
PMVCSTAAKSVIRLINCTSQPVTLQLRSFQALSRQPLKLAELRQMPGLKG
IMQSYWFLAPPIRYSRNSRENELDLGDEAVLSSSKQRLRRKQKYRETDDA
AVDEDDLYANAHKITLRSSDSGDEEHTASVHEMCDEYFHYLL*

AT20211.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10516-PA 342 CG10516-PA 1..342 1..342 1836 100 Plus
SP555-PD 293 CG14041-PD 59..261 45..245 291 36.7 Plus
SP555-PB 293 CG14041-PB 59..261 45..245 291 36.7 Plus
SP555-PC 301 CG14041-PC 59..261 45..245 291 36.7 Plus
SP555-PA 301 CG14041-PA 59..261 45..245 291 36.7 Plus