Clone AT20289 Report

Search the DGRC for AT20289

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:202
Well:89
Vector:pOTB7
Associated Gene/TranscriptCG11037-RA
Protein status:AT20289.pep: gold
Preliminary Size:846
Sequenced Size:935

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11037 2002-01-01 Sim4 clustering to Release 2
CG11037 2002-01-18 Blastp of sequenced clone
CG11037 2003-01-01 Sim4 clustering to Release 3
CG11037 2008-04-29 Release 5.5 accounting
CG11037 2008-08-15 Release 5.9 accounting
CG11037 2008-12-18 5.12 accounting

Clone Sequence Records

AT20289.complete Sequence

935 bp (935 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089380

> AT20289.complete
CAATGGAATGGCATCTCGTTTGCTGCGTGCTGGCTTGCACTTTAGTTTCG
ACCCAAGTATATGGCCAAGAACAGGAGAAAATTGTGCTTTCCCTGCCGGA
TGAAAGTGGTCAACCGGGCAAAAATCTCACTCTCGATGTGGCACAGCTGG
CCAAGATAGTTCTTCCATCACCACATGAAACTCGCGTAATTGGCGGCCAT
GTGACCACAAATGCCAAGTTGGGAGGATACCTAACAGCCTTGCTTTATGA
AGACGATTTTGTTTGTGGCGGTACATTGCTCAACGAAAACATCGTCCTGA
CGGCGGCTCACTGTTTTCTGGGTCGAATGAAGGCGAGCGAATGGATTGTG
GCTGCCGGCATTTCGAATCTCAATCAAAAGGGTATTCGACGCCATGTTAA
GGACTTCATCCTGTCCGAGCAATTTCGAGAGGACGACATGAATATGGATG
TAGCAGTGGTACTGCTGAAAACTCCATTGAAGGCTAAAAACATCGGAACA
CTGAGCTTATGTTCGGTGAGCCTTAAGCCAGGCGTAGAACTGGTGGTTTC
CGGATGGGGCATGACCGCTCCCCGAGGACGTGGGCCCCACAACTTACTAC
GTACGGTGACAGTGCCAATTATTCACAAAAAGAACTGTCGCGCTGCCTAT
CAGCCCACGGCTAAAATAACCGACAGTATGATATGTGCTGCAGTGCTGGG
ACGTAAGGATGCGTGCACCTTTGACTCAGGTGGGCCGTTGGTGTTCAAAA
AGCAGGTGTGTGGCATAGTGTCCTTTGGCATTGGATGTGCTAGCAACCGT
TATCCTGGCGTCTACACGGATGTTATGTACGTGAAGCCTTTTATCGAGAA
AAGCATTAAAGCTTTGCTAGCAAAACGATAAATAAAAGCTTTCTACACTT
AGAAATCATTTATAAAAAAAAAAAAAAAAAAAAAA

AT20289.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11037-RA 1073 CG11037-RA 85..1001 1..917 4585 100 Plus
CG10587-RA 910 CG10587-RA 594..784 600..790 370 79.5 Plus
CG10587-RB 964 CG10587-RB 718..841 667..790 290 82.2 Plus
CG10587-RA 910 CG10587-RA 804..880 810..886 190 83.1 Plus
CG10587-RB 964 CG10587-RB 861..937 810..886 190 83.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20949727..20950390 664..1 3305 99.8 Minus
chr3L 24539361 chr3L 20949402..20949655 913..660 1270 100 Minus
chr3L 24539361 chr3L 20950561..20950780 886..667 425 79.5 Minus
chr3L 24539361 chr3L 20944809..20944972 868..705 340 80.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20960723..20961386 664..1 3305 99.8 Minus
3L 28110227 3L 20960394..20960651 917..660 1290 100 Minus
3L 28110227 3L 20961557..20961776 886..667 425 79.5 Minus
3L 28110227 3L 20955805..20955968 868..705 340 80.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20953823..20954486 664..1 3305 99.8 Minus
3L 28103327 3L 20953494..20953751 917..660 1290 100 Minus
3L 28103327 3L 20948905..20949068 868..705 340 80.4 Minus
3L 28103327 3L 20954753..20954876 790..667 290 82.2 Minus
3L 28103327 3L 20954657..20954733 886..810 190 83.1 Minus
Blast to na_te.dros performed on 2019-03-16 22:51:43 has no hits.

AT20289.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:52:23 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20949402..20949654 661..913 100 <- Minus
chr3L 20949731..20950390 1..660 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:12 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..879 3..881 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:07 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..879 3..881 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:14:20 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..879 3..881 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:07 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..879 3..881 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:44:13 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..879 3..881 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:20 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..913 1..913 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:07 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..913 1..913 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:20 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..913 1..913 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:07 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..913 1..913 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:44:13 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
CG11037-RA 1..913 1..913 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:23 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20960398..20960650 661..913 100 <- Minus
3L 20960727..20961386 1..660 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:23 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20960398..20960650 661..913 100 <- Minus
3L 20960727..20961386 1..660 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:52:23 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20960398..20960650 661..913 100 <- Minus
3L 20960727..20961386 1..660 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:20 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20953498..20953750 661..913 100 <- Minus
arm_3L 20953827..20954486 1..660 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:52 Download gff for AT20289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20953498..20953750 661..913 100 <- Minus
3L 20953827..20954486 1..660 100   Minus

AT20289.pep Sequence

Translation from 2 to 880

> AT20289.pep
MEWHLVCCVLACTLVSTQVYGQEQEKIVLSLPDESGQPGKNLTLDVAQLA
KIVLPSPHETRVIGGHVTTNAKLGGYLTALLYEDDFVCGGTLLNENIVLT
AAHCFLGRMKASEWIVAAGISNLNQKGIRRHVKDFILSEQFREDDMNMDV
AVVLLKTPLKAKNIGTLSLCSVSLKPGVELVVSGWGMTAPRGRGPHNLLR
TVTVPIIHKKNCRAAYQPTAKITDSMICAAVLGRKDACTFDSGGPLVFKK
QVCGIVSFGIGCASNRYPGVYTDVMYVKPFIEKSIKALLAKR*

AT20289.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10198-PA 272 GF10198-PA 24..272 41..289 854 63.9 Plus
Dana\GF10197-PA 277 GF10197-PA 7..277 7..292 807 54.4 Plus
Dana\GF10196-PA 263 GF10196-PA 20..261 48..289 744 55 Plus
Dana\GF13344-PA 260 GF13344-PA 34..259 59..286 510 42.1 Plus
Dana\GF24381-PA 250 GF24381-PA 24..249 59..286 438 39.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13273-PA 292 GG13273-PA 1..292 1..292 1339 85.3 Plus
Dere\GG13272-PA 276 GG13272-PA 25..276 41..292 909 66.7 Plus
Dere\GG13274-PA 273 GG13274-PA 23..272 41..290 873 65.6 Plus
Dere\GG23011-PA 246 GG23011-PA 20..245 59..286 505 43.4 Plus
Dere\GG14278-PA 248 GG14278-PA 22..246 59..285 440 40.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15562-PA 274 GH15562-PA 17..270 39..288 665 55.3 Plus
Dgri\GH15251-PA 253 GH15251-PA 13..251 53..288 424 37.8 Plus
Dgri\GH15252-PA 261 GH15252-PA 49..259 76..285 415 41.5 Plus
Dgri\GH15245-PA 343 GH15245-PA 139..341 81..285 387 41.3 Plus
Dgri\GH15247-PA 255 GH15247-PA 28..253 59..291 368 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11037-PA 292 CG11037-PA 1..292 1..292 1523 100 Plus
CG10587-PA 276 CG10587-PA 1..276 1..292 908 61.3 Plus
CG10587-PC 289 CG10587-PC 1..289 1..292 884 58.7 Plus
Sems-PA 275 CG10586-PA 23..273 41..291 871 66.5 Plus
CG10587-PD 225 CG10587-PD 1..205 1..221 585 53.8 Plus
CG3650-PA 249 CG3650-PA 8..248 44..286 500 42.8 Plus
CG32271-PA 248 CG32271-PA 23..246 60..285 439 40.3 Plus
CG33159-PA 257 CG33159-PA 3..255 39..288 407 37.3 Plus
CG32269-PB 332 CG32269-PB 93..322 46..278 362 36.8 Plus
CG32269-PA 332 CG32269-PA 93..322 46..278 362 36.8 Plus
CG32270-PA 259 CG32270-PA 30..255 61..285 348 36 Plus
CG33160-PA 258 CG33160-PA 31..255 59..286 347 34.6 Plus
zetaTry-PA 280 CG12387-PA 19..280 42..288 334 33.2 Plus
CG13430-PB 267 CG13430-PB 31..267 61..289 322 34.5 Plus
CG13430-PA 267 CG13430-PA 31..267 61..289 322 34.5 Plus
CG32376-PA 291 CG32376-PA 64..288 60..285 320 36.4 Plus
etaTry-PA 262 CG12386-PA 59..256 88..283 319 37 Plus
thetaTry-PA 262 CG12385-PA 28..262 55..288 319 35.8 Plus
CG32374-PA 299 CG32374-PA 72..297 60..286 319 36.1 Plus
CG34129-PA 314 CG34129-PA 30..270 52..287 315 33.7 Plus
alphaTry-PA 256 CG18444-PA 30..256 61..288 312 34.3 Plus
CG11192-PB 279 CG11192-PB 21..265 55..287 304 32.4 Plus
Ser12-PA 245 CG17240-PA 23..245 61..288 299 36 Plus
epsilonTry-PA 256 CG18681-PA 30..252 61..284 298 33.6 Plus
gammaTry-PA 253 CG30028-PA 30..249 61..281 296 34.1 Plus
CG30025-PA 253 CG30025-PA 30..249 61..281 296 34.1 Plus
deltaTry-PA 253 CG12351-PA 30..249 61..281 296 34.1 Plus
CG30031-PA 253 CG30031-PA 30..249 61..281 296 34.1 Plus
CG7829-PA 253 CG7829-PA 20..247 54..283 294 31.5 Plus
CG17239-PB 248 CG17239-PB 23..244 61..288 293 36.1 Plus
CG17239-PA 248 CG17239-PA 23..244 61..288 293 36.1 Plus
CG31954-PA 277 CG31954-PA 50..273 61..283 293 32.9 Plus
CG6041-PA 308 CG6041-PA 32..276 59..288 292 29.4 Plus
betaTry-PB 253 CG18211-PB 30..249 61..281 291 34.5 Plus
betaTry-PA 253 CG18211-PA 30..249 61..281 291 34.5 Plus
CG8299-PA 260 CG8299-PA 55..260 87..289 291 34.6 Plus
CG11836-PI 281 CG11836-PI 39..275 56..286 290 33.7 Plus
CG11836-PJ 333 CG11836-PJ 91..327 56..286 290 33.7 Plus
CG17571-PB 258 CG17571-PB 57..258 88..288 285 36.8 Plus
CG17571-PA 258 CG17571-PA 57..258 88..288 285 36.8 Plus
CG4815-PA 265 CG4815-PA 34..263 61..288 282 31.5 Plus
lambdaTry-PA 272 CG12350-PA 35..260 61..285 282 30.9 Plus
CG5390-PB 406 CG5390-PB 147..395 63..286 280 33.3 Plus
CG5390-PA 406 CG5390-PA 147..395 63..286 280 33.3 Plus
CG11836-PF 223 CG11836-PF 1..217 77..286 275 34.2 Plus
CG11836-PE 223 CG11836-PE 1..217 77..286 275 34.2 Plus
CG11836-PG 223 CG11836-PG 1..217 77..286 275 34.2 Plus
CG11836-PC 223 CG11836-PC 1..217 77..286 275 34.2 Plus
CG11836-PA 223 CG11836-PA 1..217 77..286 275 34.2 Plus
CG11836-PB 223 CG11836-PB 1..217 77..286 275 34.2 Plus
iotaTry-PA 252 CG7754-PA 53..252 88..288 271 35.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16837-PA 287 GI16837-PA 38..283 45..286 684 54.3 Plus
Dmoj\GI11960-PA 250 GI11960-PA 20..250 61..288 445 40.8 Plus
Dmoj\GI11961-PA 263 GI11961-PA 38..261 61..285 439 40.3 Plus
Dmoj\GI20607-PA 261 GI20607-PA 30..261 57..288 361 39.7 Plus
Dmoj\GI11955-PA 358 GI11955-PA 132..357 59..287 351 37.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26259-PA 274 GL26259-PA 22..274 40..292 743 55.3 Plus
Dper\GL25242-PA 254 GL25242-PA 22..252 61..288 449 41.6 Plus
Dper\GL25243-PA 261 GL25243-PA 27..260 52..286 438 39.6 Plus
Dper\GL25238-PA 270 GL25238-PA 41..267 61..286 342 34.9 Plus
Dper\GL16782-PA 281 GL16782-PA 29..198 59..229 339 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10417-PA 274 GA10417-PA 22..274 40..292 743 55.3 Plus
Dpse\GA17587-PA 255 GA17587-PA 29..254 59..286 496 42.1 Plus
Dpse\GA16803-PA 257 GA16803-PA 23..256 52..286 439 39.6 Plus
Dpse\GA16805-PA 467 GA16805-PA 259..465 86..288 428 42.8 Plus
Dpse\GA23737-PA 270 GA23737-PA 41..267 61..286 345 34.9 Plus
Dpse\GA16805-PA 467 GA16805-PA 20..252 57..291 213 31.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22175-PA 276 GM22175-PA 1..276 1..292 929 61.6 Plus
Dsec\GM22176-PA 278 GM22176-PA 23..273 41..291 884 65.3 Plus
Dsec\GM19492-PA 147 GM19492-PA 1..147 146..292 763 98 Plus
Dsec\GM11905-PA 249 GM11905-PA 23..248 59..286 500 43.9 Plus
Dsec\GM14071-PA 248 GM14071-PA 22..246 59..285 436 39.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12154-PA 292 GD12154-PA 1..292 1..292 1533 98.3 Plus
Dsim\GD12153-PA 276 GD12153-PA 1..276 1..292 930 62 Plus
Dsim\GD17559-PA 278 GD17559-PA 23..273 41..291 881 64.9 Plus
Dsim\GD11903-PA 249 GD11903-PA 23..248 59..286 504 43.9 Plus
Dsim\GD13344-PA 256 GD13344-PA 3..255 39..288 417 37.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12587-PA 284 GJ12587-PA 27..277 40..286 744 53.4 Plus
Dvir\GJ12185-PA 243 GJ12185-PA 32..241 76..285 440 42.7 Plus
Dvir\GJ12183-PA 250 GJ12183-PA 20..250 61..288 439 42.1 Plus
Dvir\GJ12180-PA 336 GJ12180-PA 111..333 59..285 370 36.1 Plus
Dvir\GJ12181-PA 253 GJ12181-PA 26..251 59..291 360 37.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13475-PA 251 GK13475-PA 1..248 42..288 772 57.3 Plus
Dwil\GK21642-PA 254 GK21642-PA 28..253 59..286 479 40.8 Plus
Dwil\GK19136-PA 252 GK19136-PA 26..251 59..286 477 42.6 Plus
Dwil\GK19135-PA 263 GK19135-PA 29..260 58..286 456 41 Plus
Dwil\GK19133-PA 263 GK19133-PA 27..251 59..286 359 39.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22727-PA 292 GE22727-PA 1..292 1..292 1354 86 Plus
Dyak\GE22369-PA 292 GE22369-PA 1..292 1..292 1354 86 Plus
Dyak\GE22726-PA 276 GE22726-PA 1..276 1..292 924 59.9 Plus
Dyak\GE22367-PA 276 GE22367-PA 1..276 1..292 919 59.6 Plus
Dyak\GE22728-PA 273 GE22728-PA 23..273 41..291 835 61.4 Plus

AT20289.hyp Sequence

Translation from 2 to 880

> AT20289.hyp
MEWHLVCCVLACTLVSTQVYGQEQEKIVLSLPDESGQPGKNLTLDVAQLA
KIVLPSPHETRVIGGHVTTNAKLGGYLTALLYEDDFVCGGTLLNENIVLT
AAHCFLGRMKASEWIVAAGISNLNQKGIRRHVKDFILSEQFREDDMNMDV
AVVLLKTPLKAKNIGTLSLCSVSLKPGVELVVSGWGMTAPRGRGPHNLLR
TVTVPIIHKKNCRAAYQPTAKITDSMICAAVLGRKDACTFDSGGPLVFKK
QVCGIVSFGIGCASNRYPGVYTDVMYVKPFIEKSIKALLAKR*

AT20289.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11037-PA 292 CG11037-PA 1..292 1..292 1523 100 Plus
CG10587-PA 276 CG10587-PA 1..276 1..292 908 61.3 Plus
CG10587-PC 289 CG10587-PC 1..289 1..292 884 58.7 Plus
Sems-PA 275 CG10586-PA 23..273 41..291 871 66.5 Plus
CG10587-PD 225 CG10587-PD 1..205 1..221 585 53.8 Plus