Clone AT20596 Report

Search the DGRC for AT20596

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:205
Well:96
Vector:pOTB7
Associated Gene/TranscriptStrip-RA
Protein status:AT20596.pep: gold
Preliminary Size:3806
Sequenced Size:3551

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11526 2008-04-29 Release 5.5 accounting
CG11526 2008-08-15 Release 5.9 accounting
CG11526 2008-12-18 5.12 accounting

Clone Sequence Records

AT20596.complete Sequence

3551 bp (3551 high quality bases) assembled on 2006-01-20

GenBank Submission: BT024459

> AT20596.complete
GCCGTAAACGCCAGATCCTCGATGATGCAGTCCATCCAGTCTAGGATCAA
CGTGCTTAACACCATTGCTGCTTCCAGCAAGCGGATTGAACGCGCCAGCG
TTGACACGAACCCTTATTTCAAATTTAAAACAGCGGCAATTGCATCAGTC
GCTGCCACATCCGAGCGAACGGCCTTGCCAGACGGCCAACACCATTTGCT
GTTTGGTATTTTCCAACTACACAGCAAACGGTCGTACGAATTTTCTTCTT
TTTCCATTGTGCGTTTTTGTTTTTGGCGAGAAACAAATTGCAGTCGAAAT
TACCCAGTGAAATGCAGTGCGAATTGCTTAGTACGTCCATGTGCTACTAA
GACCAAGTGGGAGAGAAAACCAGCGAGCAGGAGCAACCACGCCCACGCCA
GGCGCACCGCCCACCGCCGCAGGATACACATACACGAGTAGCCCACACTC
ACGCACATACACTTGCACACAAAAGAGATCCCTGTGTGGCGAAAAAGGAT
TTGCGGAATGATGCTCACATCCATAAACAACTCCTTTGAGCAGGACACCC
ACGATGCGGACGCCAACTGCGACGGGCCCGACCTGGACTTCGTGTACGCG
GACGTGGATGGCTATCAGAACGAGATCGCTGAACTGTATAGCTACACGGA
GTTCAGCGAGTTTCAGATGAACGTGAAGGCCTTCGAGGACCAGATGGAGC
TGTACGACCTGCCGCCCAACTGGCAGAAGCAGGACTCCGCCTCCCAGCGC
GGCATCGTGATGAAGCTGGTGGACCAGCTGGAGGTCTCCGATCGATCCTT
TCGCATGCAGGCCGCCCGGTGCATCCTTTACCTGGCCCAAGGCTGCTGGG
CGGAGGTTCAGTCGGACGAGGAGCAGCACCAGATCACCAGGGACAATGTG
CTGGTGCTCTACCAACTCGGCGTCTTCGCCTCCTTCATCGACCTGCTCAA
CATGGAGATCGAAAGCGCCTGCTCTCCGGACATTGTGGCCGTCAAGATCA
CTAACGTCACGCTTGTGGACTCCACGGACATTCGGGTGATCCTATCTGTG
CTCTACATCATCACAGAAACGATTCGCGATGAAAAGGAAAAGGGCAGCGA
AGACTACAGAGAGCTGGCCGACTCCTTTGTGCAAGAAATCAACTCACCAC
TACCAGATGGCGAACTTCTGGCCGTCAAGCTGTTGGGCATGATCACACGG
TTTTGCAGTGGCGCAGCACCGCAGTTCCCCATGAAGAAGGTTGTCCTCCT
GCTGTGGAAAGTTTCGCTGCTGGGACTGGGAGGCATGGATGTGCTCAAGA
ATCTCAAGAACGAGTATCGATTGAAGGTGGGTTTGGAACCCATCACCGAG
GACACGCTGGAGGTTACCAAGTGCATGCGAGCCAGCTCACCGCCGGCCAC
AGCTACTGATATACTGGAGAACCAGTATCCCAAGCGGAACTTCAAACGCT
CCCTGATGAAGCAGCGTTTTTTGGACGAGCCCGAGCAGATAGACATGGAG
ATGGGCGGCAACGAGGGTCAAAATAATGCCAACAATGGCAGCGGCAATGG
CGGAAACGGGGAGGAGGAACTCTCTCAGTACTACAGACCCTACGATGACC
CCTCTTCGTCCGCATCCACCACCTCGACGGCAAATCCAAACAACCAGCCT
AGCCTAACACAGCCACCCGCTGCTGTGCCTCCGGTACAGATCACGGCTCG
CCTGCCCTGGACGCCCAAGGTGCGACAAAAGGACATTGACCAGTTTCTGG
ACATTTCGCGGAATAAGTTCATCGGGTATTCGCTGATTGGTGACCACGAG
AGTCTGGCTGGACTGCCGCAACCCATTCACGAGGGCTTTAAGACGCTGCA
GCGGCACATGTATATGAGCCTGGCCGATGTGCAAATCAAGAAGGAGGAGG
ACATAGCTAGGAACCCCATTTCCACGCACGAAGACGAAATCAAACTGACC
CCGGCTGAGGTGTTGTACCAAGCCATCCTGCCAAACCTGCCGCAGTATAT
GATCGCCCTCCTTAAGGTCCTGCTGGCAGCTTCGCCAACGTCCAAGTCCA
AGACGGAGAGCATTAACATAATGGCCGATGTGCTGCCTAGGAAGATGCCG
CTGACGGCCACCCAATCAACAAAGCTAACCGTCGACATTGGTCGGCACAA
GGAGATCATTGTGAAGGCTGTCTCGGCCATCATCCTGCTATATTTAAAGC
ATTTCAAGATAAACCATGTTTACCAGTTTGAGTTCATGTCGCAGCATCTC
GTGTTCGCCAACTGCATCCCGCTGGTTTTGAAGTTCTTCAATCAGACAAT
CACGGAGTACGTGAACACCAAGAACTCCATTCCTCTGCTCGATTTCCCGT
CGTGTGTGATTGGTGAGCAACCGGATTTGAGTGGCGATAGCTTTGTGTAT
GGCGGAGAGATGTCCGATAAGTCCTACTCTTGGCGGAACGTGTTCTCCTG
CATAAACCTGCTGCGCATCCTCAACAAGCTGATCAAGTGGAAGCACTCGC
GAGTGATGATGCTGGTGGTATTCAAGTCGGCACCAATCCTGAAGAAGACG
CTTAAGGTGCGCCACGCCATGATGCAGCTGTACGTGCTGAAGCTGCTCAA
GATGCAGACCAAGTACTTGGGCCGCCAGTGGCGGAAGTCCAATATGAAGA
CCATGAGTGCAATTTACGCCAAGGTGCGGCATCGTCTAAACGACGATTGG
GCCTTTGGCAACGACTTGGAGTCGCGTCCCTGGGACTTCCAGGCGGAGGA
GTGTACGCTGCGGGCCTGCGTGGATCGATTCAACCTGCGACGCTATCCGG
AAGCCACCCAGAAGTGTGGAAACAACGGCACGGCAGCTCAGAATGCGGAG
AACGCCCAGCAATCCAACATGATGGCGGGCAACAATGGATGTGGCAATAA
TGGCGACGCAAATGGCTATGGAAACAACGGTGGCGGTGGCAATGGCGGCC
ACAACCAGCAGCAGCAGCTCAACGACTATGGTGTGGAGGGTGGCTTTCCC
AGCGACGAGATCCTTACCCACTCGGACTTTGCCTTCTTCGGTCACTCGGG
TTGGTGGGATCGCAAGGTCGAGCTGACGGATTACTTCAAGGCCAATTACG
CGGTCTGGCTGGAGGAGGAGGTCTACAACAGTCAGACCGACTGGGACGCC
CTCTAGGGCAGGGCTGCCATCGCTGCTCTAATATCCACATGCGCGTCATA
AAAGCAAGAAGTTATTAACGTAATTGTAAGCATTAAGAAGTACATTGATA
TAATCCATGTAGCCCGACCACGATTGAAACACCAACTACTCACTGAATTG
GCAATAATTTGGCAAGCCACGGGCCTCCGCTGCGCTCCTCTTCACTAACT
AGCATACGCGAATACCATACCCATAGCGATGACAAGCCTGTATATGTAAT
GATTGTATTTTTTAATTTATATATTTATTATTTTACCTGTTCTGCGAGCC
CTTGAAACGGATCGCGGCAATCGGCTTCTGTAGCGGAATAAACAAATTTG
CTAGTTCGAAAACGACACTTGGCTTGAGGTTAAAAAAAAAAAAAAAAAAA
A

AT20596.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11526-RA 3596 CG11526-RA 66..3596 1..3531 17415 99.5 Plus
CG11526-RB 3377 CG11526-RB 389..3377 543..3531 14795 99.6 Plus
CG11526-RB 3377 CG11526-RB 282..389 1..108 540 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3322320..3324046 3172..1446 8485 99.4 Minus
chr3L 24539361 chr3L 3324110..3325447 1445..108 6585 99.5 Minus
chr3L 24539361 chr3L 3321894..3322253 3531..3172 1785 99.7 Minus
chr3L 24539361 chr3L 3328106..3328207 108..7 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3322910..3324636 3172..1446 8485 99.4 Minus
3L 28110227 3L 3324700..3326037 1445..108 6600 99.6 Minus
3L 28110227 3L 3322481..3322843 3534..3172 1815 100 Minus
3L 28110227 3L 3328699..3328806 108..1 540 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3322910..3324636 3172..1446 8485 99.4 Minus
3L 28103327 3L 3324700..3326037 1445..108 6600 99.5 Minus
3L 28103327 3L 3322481..3322843 3534..3172 1815 100 Minus
3L 28103327 3L 3328699..3328806 108..1 540 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:04:53 has no hits.

AT20596.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:06:05 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3321894..3322252 3173..3531 91 <- Minus
chr3L 3322320..3324046 1446..3172 99 <- Minus
chr3L 3324110..3325446 109..1445 99 <- Minus
chr3L 3328106..3328216 1..108 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:26 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 1..2649 508..3156 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:38:26 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 1..2649 508..3156 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:29 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 1..2649 508..3156 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:13:28 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 1..2649 508..3156 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:15:04 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
Strip-RA 1..2649 508..3156 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:10:23 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 66..3596 1..3531 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:38:26 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 66..3596 1..3531 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:29 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 66..3596 1..3531 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:13:28 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RA 66..3596 1..3531 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:15:04 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
Strip-RA 66..3596 1..3531 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:05 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322484..3322842 3173..3531 100 <- Minus
3L 3322910..3324636 1446..3172 99 <- Minus
3L 3324700..3326036 109..1445 99 <- Minus
3L 3328699..3328806 1..108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:05 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322484..3322842 3173..3531 100 <- Minus
3L 3322910..3324636 1446..3172 99 <- Minus
3L 3324700..3326036 109..1445 99 <- Minus
3L 3328699..3328806 1..108 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:05 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322484..3322842 3173..3531 100 <- Minus
3L 3322910..3324636 1446..3172 99 <- Minus
3L 3324700..3326036 109..1445 99 <- Minus
3L 3328699..3328806 1..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:29 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3322484..3322842 3173..3531 100 <- Minus
arm_3L 3322910..3324636 1446..3172 99 <- Minus
arm_3L 3324700..3326036 109..1445 99 <- Minus
arm_3L 3328699..3328806 1..108 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:01:23 Download gff for AT20596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322484..3322842 3173..3531 100 <- Minus
3L 3322910..3324636 1446..3172 99 <- Minus
3L 3324700..3326036 109..1445 99 <- Minus
3L 3328699..3328806 1..108 100   Minus

AT20596.pep Sequence

Translation from 507 to 3155

> AT20596.pep
MMLTSINNSFEQDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFS
EFQMNVKAFEDQMELYDLPPNWQKQDSASQRGIVMKLVDQLEVSDRSFRM
QAARCILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFIDLLNME
IESACSPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDY
RELADSFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLW
KVSLLGLGGMDVLKNLKNEYRLKVGLEPITEDTLEVTKCMRASSPPATAT
DILENQYPKRNFKRSLMKQRFLDEPEQIDMEMGGNEGQNNANNGSGNGGN
GEEELSQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPVQITARLP
WTPKVRQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRH
MYMSLADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIA
LLKVLLAASPTSKSKTESINIMADVLPRKMPLTATQSTKLTVDIGRHKEI
IVKAVSAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFFNQTITE
YVNTKNSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCIN
LLRILNKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQ
TKYLGRQWRKSNMKTMSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECT
LRACVDRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGD
ANGYGNNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWW
DRKVELTDYFKANYAVWLEEEVYNSQTDWDAL*

AT20596.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 13:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23912-PA 889 GF23912-PA 1..889 1..882 4614 96 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 13:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14265-PA 882 GG14265-PA 1..882 1..882 4761 99.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 13:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15524-PA 923 GH15524-PA 1..923 1..882 4274 88.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Strip-PC 882 CG11526-PC 1..882 1..882 4625 100 Plus
Strip-PA 882 CG11526-PA 1..882 1..882 4625 100 Plus
Strip-PB 927 CG11526-PB 54..927 9..882 4570 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 13:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16801-PA 903 GI16801-PA 1..903 1..882 4267 90.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 13:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16094-PA 892 GL16094-PA 1..892 1..882 4124 89.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 13:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11051-PA 898 GA11051-PA 1..898 1..882 4175 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 13:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14058-PA 935 GM14058-PA 62..935 9..882 4719 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 13:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13333-PA 361 GD13333-PA 1..361 522..882 1981 99.4 Plus
Dsim\GD13332-PA 286 GD13332-PA 62..283 9..230 1165 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 13:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12546-PA 907 GJ12546-PA 1..907 1..882 4321 90.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 13:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20380-PA 907 GK20380-PA 1..907 1..882 4172 89.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 13:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20691-PA 913 GE20691-PA 40..913 9..882 4706 98.7 Plus

AT20596.hyp Sequence

Translation from 507 to 3155

> AT20596.hyp
MMLTSINNSFEQDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFS
EFQMNVKAFEDQMELYDLPPNWQKQDSASQRGIVMKLVDQLEVSDRSFRM
QAARCILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFIDLLNME
IESACSPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDY
RELADSFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLW
KVSLLGLGGMDVLKNLKNEYRLKVGLEPITEDTLEVTKCMRASSPPATAT
DILENQYPKRNFKRSLMKQRFLDEPEQIDMEMGGNEGQNNANNGSGNGGN
GEEELSQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPVQITARLP
WTPKVRQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRH
MYMSLADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIA
LLKVLLAASPTSKSKTESINIMADVLPRKMPLTATQSTKLTVDIGRHKEI
IVKAVSAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFFNQTITE
YVNTKNSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCIN
LLRILNKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQ
TKYLGRQWRKSNMKTMSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECT
LRACVDRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGD
ANGYGNNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWW
DRKVELTDYFKANYAVWLEEEVYNSQTDWDAL*

AT20596.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
Strip-PC 882 CG11526-PC 1..882 1..882 4625 100 Plus
Strip-PA 882 CG11526-PA 1..882 1..882 4625 100 Plus
Strip-PB 927 CG11526-PB 54..927 9..882 4570 99.7 Plus