Clone AT20635 Report

Search the DGRC for AT20635

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:206
Well:35
Vector:pOTB7
Associated Gene/TranscriptCG14420-RA
Protein status:AT20635.pep: gold
Preliminary Size:882
Sequenced Size:1592

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14420 2002-01-01 Sim4 clustering to Release 2
CG14420 2002-01-18 Blastp of sequenced clone
CG14420 2003-01-01 Sim4 clustering to Release 3
CG14420 2008-04-29 Release 5.5 accounting
CG14420 2008-08-15 Release 5.9 accounting
CG14420 2008-12-18 5.12 accounting

Clone Sequence Records

AT20635.complete Sequence

1592 bp (1592 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089382

> AT20635.complete
AAACATACAAAAATAGATAAGCACATATTTTGGAATAGTTGTCAAGAAAA
GATTTTGTCTTCGAACTATGCAATAAATCGCAAACCCTTTGTAAATTATA
AATTTTGAGATTTCATTAAGTTTTGAATTTTTCGAAACGAATTCAGTTTA
GACTTCAGTTGAGTACTCCATTCTTTGGTGTGGAAATGCCGAGCACTGAG
TGAGCTAAAGCAAGTTGAGAACTGACATCCCAGAACATCTGTGTAAGCCA
GATTCCGTGGGTCAATCTCGGCTTGACGTCAATCAATCATCGGCTACTCG
GCGATGGATAGAAGAATGGTTTTGGCAAAAGAGATGGGAAATTAGCATAA
AATTCGTACGCCTCTGACCCGCGACCCGGTTCACTTTGACCCCGGGCGAA
CTTTTGCTAATAGAGCTGGCCAAGAAGTGGGAACTGAAAGGAAATGGGGA
TGCGGGGCGGATGATAGCCATCGATCAGCTGTATGAGCTCCAAGTGGGTA
TAAAATCCCGGGTCAGTCCATCAGTTGTCAGTCAGTTGTGAGTGAAAACT
CAAAGACAACAAGTGAGTTAGGAACCCTCGATCCACAGTCAAGGAAGCCG
ATTATCCCGATAAGGAGAATCCATCTGCAGAATGCATTGCCTGCTTCAAC
TGAGTCTGGCTGTGGCCCTTTGCGCCCTCTTAGCCCCATCCACTACCTTG
GCCGAACGCCGCAATGTGTACCGCCTGGGTGGACGCGCCTCCGACGCTCA
GATGGAGGCCCGCTTCACATCGTCGATTGCCAACAAGCTGACCTCGCTGA
AGGGCACCACCACGACGACCACGGTTGCCCCCACTACCACCACCACGCCC
ACCTCCACTACGGAGACGACCACGCCGACTGCACCAACAACGTCCACTGG
CACCTCGACGAGCACCACCACGCCCACAACCTCCGACACCACCACCGGTC
GTGCCTTCCCCGCAATTCAAGACGATGTTGAGGAAGATGATGAGGAGATG
CCCAGGGCGTTTGAAGATGAAGAAGACGAAGGTGACGACAGCCTGGAGGA
CGAAGATGATGACGACGATGAGGAGAGCTACTTTGTGGCCGCTCCTTCCG
CCGGTGGCAATAGCAATGCCGTGCAGCAGTCCTCAGAGTCCGGCTCGTTG
GTCCGCCCCTCGGAACTCCAGTGGCGCCAGTTCCAGCAGGAACAGCGCAA
CCGTCGCCGAATCCAGCGCCTCCAGCGTGAGCACAACCAGCGGATCAGGT
CCCTCCTTCGCCGCCAGAGGGCCGCCGAGAAGCGAAGCCAGCAACGCTTG
CGCCGCCAGCGCCAACAGAGCCGTAAGCGCGTCTCACAGCGCCAGCGCCG
CAACAGGAACCGTTCCAAGGCCCAGCGCCAGCGCCAGAGGAGGAACAACA
TGAACCGTCGTCGCCGCCAGCAGCAGCAGCGCCAGCGCAGACACCGCCAG
CAGCAGCGTCGCCGGCTCGTGCGCCTCATGCGCCGTCGTCGTCGTGGCGG
ACGTCGCAACTAAGGAGTTGATCCCAGATCCCCAACCGATCCCAGAACCC
CCGAAATAAACTGAACTTGTATGCAAAAAAAAAAAAAAAAAA

AT20635.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14420-RA 1585 CG14420-RA 1..1579 1..1583 7535 98.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2833442..2834315 701..1574 4370 100 Plus
chrX 22417052 chrX 2832640..2833340 1..701 3400 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:54:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2939654..2940536 701..1583 4295 99.1 Plus
X 23542271 X 2938856..2939552 1..701 3225 98 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2947752..2948634 701..1583 4295 99 Plus
X 23527363 X 2947099..2947650 150..701 2715 99.4 Plus
X 23527363 X 2946954..2947095 1..143 600 95.8 Plus
Blast to na_te.dros performed 2019-03-16 06:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 567..596 1039..1068 114 86.7 Plus

AT20635.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:06:12 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2832640..2833340 1..701 99 -> Plus
chrX 2833443..2833545 702..804 100 == Plus
chrX 2833688..2833711 947..970 100 == Plus
chrX 2833816..2834315 1075..1574 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:32 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..882 632..1513 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:11 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..882 632..1513 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:35 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..882 632..1513 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:09 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..882 632..1513 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:15:11 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..882 632..1513 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:23 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..1570 1..1574 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:11 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..1570 1..1574 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:35 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..1570 1..1574 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:10 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..1570 1..1574 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:15:11 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
CG14420-RA 1..1570 1..1574 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:12 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
X 2938856..2939552 1..701 98 -> Plus
X 2939655..2940527 702..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:12 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
X 2938856..2939552 1..701 98 -> Plus
X 2939655..2940527 702..1574 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:12 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
X 2938856..2939552 1..701 98 -> Plus
X 2939655..2940527 702..1574 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:35 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2832889..2833585 1..701 98 -> Plus
arm_X 2833688..2834560 702..1574 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:54 Download gff for AT20635.complete
Subject Subject Range Query Range Percent Splice Strand
X 2946954..2947650 1..701 98 -> Plus
X 2947753..2948625 702..1574 99   Plus

AT20635.pep Sequence

Translation from 631 to 1512

> AT20635.pep
MHCLLQLSLAVALCALLAPSTTLAERRNVYRLGGRASDAQMEARFTSSIA
NKLTSLKGTTTTTTVAPTTTTTPTSTTETTTPTAPTTSTGTSTSTTTPTT
SDTTTGRAFPAIQDDVEEDDEEMPRAFEDEEDEGDDSLEDEDDDDDEESY
FVAAPSAGGNSNAVQQSSESGSLVRPSELQWRQFQQEQRNRRRIQRLQRE
HNQRIRSLLRRQRAAEKRSQQRLRRQRQQSRKRVSQRQRRNRNRSKAQRQ
RQRRNNMNRRRRQQQQRQRRHRQQQRRRLVRLMRRRRRGGRRN*

AT20635.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22464-PA 311 GF22464-PA 1..233 1..217 369 55.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18637-PA 296 GG18637-PA 1..253 1..250 464 85.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12479-PA 543 GH12479-PA 177..231 155..219 158 56.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14420-PA 293 CG14420-PA 1..293 1..293 1477 100 Plus
CG14422-PA 294 CG14422-PA 8..294 4..293 350 34 Plus
CG14421-PA 238 CG14421-PA 1..232 1..272 342 34.8 Plus
CG14418-PB 284 CG14418-PB 124..277 130..292 183 31.2 Plus
CG14418-PA 327 CG14418-PA 167..320 130..292 183 31.2 Plus
pyr-PB 766 CG13194-PB 161..383 42..282 182 28.3 Plus
Muc96D-PA 881 CG31439-PA 385..444 46..105 169 58.3 Plus
CG34220-PA 726 CG34220-PA 124..183 46..105 164 56.7 Plus
Muc96D-PA 881 CG31439-PA 410..469 46..105 162 55 Plus
ImpE1-PC 1616 CG32356-PC 182..348 36..227 162 28.6 Plus
ImpE1-PA 1616 CG32356-PA 182..348 36..227 162 28.6 Plus
Muc96D-PA 881 CG31439-PA 227..291 46..110 161 52.3 Plus
Muc96D-PA 881 CG31439-PA 245..304 46..105 161 56.7 Plus
Muc96D-PA 881 CG31439-PA 416..475 46..105 161 56.7 Plus
Muc96D-PA 881 CG31439-PA 698..762 46..110 161 55.4 Plus
CG34220-PA 726 CG34220-PA 280..343 42..105 161 53.1 Plus
Mmp2-PC 606 CG1794-PC 202..325 182..291 161 36.3 Plus
Mmp2-PD 650 CG1794-PD 246..369 182..291 161 36.3 Plus
Mmp2-PB 758 CG1794-PB 354..477 182..291 161 36.3 Plus
Muc96D-PA 881 CG31439-PA 218..277 46..105 160 56.7 Plus
Muc96D-PA 881 CG31439-PA 336..395 46..105 160 56.7 Plus
Muc96D-PA 881 CG31439-PA 610..669 46..105 160 56.7 Plus
Muc96D-PA 881 CG31439-PA 285..344 46..105 159 55 Plus
Muc96D-PA 881 CG31439-PA 303..364 46..105 159 56.5 Plus
Muc96D-PA 881 CG31439-PA 318..377 46..105 159 55 Plus
Muc96D-PA 881 CG31439-PA 595..654 46..105 159 55 Plus
Muc96D-PA 881 CG31439-PA 167..226 46..105 159 55 Plus
Muc96D-PA 881 CG31439-PA 185..246 46..105 159 56.5 Plus
Muc96D-PA 881 CG31439-PA 200..259 46..105 159 55 Plus
Muc96D-PA 881 CG31439-PA 270..331 46..105 159 56.5 Plus
CG34220-PA 726 CG34220-PA 69..128 46..105 159 55 Plus
CG34220-PA 726 CG34220-PA 109..168 46..105 159 55 Plus
CG34220-PA 726 CG34220-PA 118..177 46..105 159 55 Plus
Muc96D-PA 881 CG31439-PA 152..213 46..105 158 56.5 Plus
CG6912-PA 433 CG6912-PA 91..160 41..114 158 48.6 Plus
Muc96D-PA 881 CG31439-PA 255..314 46..105 157 55 Plus
Muc96D-PA 881 CG31439-PA 426..485 46..105 157 55 Plus
Muc96D-PA 881 CG31439-PA 456..515 46..105 157 55 Plus
Muc96D-PA 881 CG31439-PA 562..621 46..105 157 55 Plus
Muc96D-PA 881 CG31439-PA 592..651 46..105 157 55 Plus
CG34220-PA 726 CG34220-PA 81..145 46..110 157 50.8 Plus
CG34220-PA 726 CG34220-PA 87..146 46..105 157 55 Plus
Muc96D-PA 881 CG31439-PA 363..429 46..105 156 52.2 Plus
Muc96D-PA 881 CG31439-PA 441..499 46..105 156 56.7 Plus
Muc96D-PA 881 CG31439-PA 580..638 46..105 156 56.7 Plus
CG34220-PA 726 CG34220-PA 291..369 46..124 156 44.3 Plus
CG34220-PA 726 CG34220-PA 535..601 59..125 156 49.3 Plus
Muc96D-PA 881 CG31439-PA 178..229 54..105 155 61.5 Plus
Muc96D-PA 881 CG31439-PA 211..262 54..105 155 61.5 Plus
Muc96D-PA 881 CG31439-PA 296..347 54..105 155 61.5 Plus
Muc96D-PA 881 CG31439-PA 329..380 54..105 155 61.5 Plus
Muc96D-PA 881 CG31439-PA 471..534 46..105 155 54.7 Plus
Muc96D-PA 881 CG31439-PA 480..544 46..110 155 50.8 Plus
Muc96D-PA 881 CG31439-PA 498..557 46..105 155 55 Plus
Muc96D-PA 881 CG31439-PA 565..624 46..105 155 55 Plus
Muc96D-PA 881 CG31439-PA 637..700 46..105 155 54.7 Plus
CG34220-PA 726 CG34220-PA 122..251 46..178 155 33.1 Plus
Muc96D-PA 881 CG31439-PA 212..273 46..105 154 54.8 Plus
Muc96D-PA 881 CG31439-PA 330..391 46..105 154 54.8 Plus
Muc96D-PA 881 CG31439-PA 345..403 46..104 154 54.2 Plus
Muc96D-PA 881 CG31439-PA 553..612 46..105 154 55 Plus
Muc96D-PA 881 CG31439-PA 604..665 46..105 154 54.8 Plus
Muc96D-PA 881 CG31439-PA 664..715 54..105 154 61.5 Plus
CG34220-PA 726 CG34220-PA 287..419 46..178 154 32.3 Plus
CG34220-PA 726 CG34220-PA 531..582 54..105 154 61.5 Plus
CG1468-PA 206 CG1468-PA 99..180 62..148 154 42.5 Plus
CG2839-PA 826 CG2839-PA 477..647 121..292 154 21.5 Plus
Muc96D-PA 881 CG31439-PA 162..221 46..105 153 55 Plus
Muc96D-PA 881 CG31439-PA 177..236 46..105 153 55 Plus
Muc96D-PA 881 CG31439-PA 179..238 46..105 153 53.3 Plus
Muc96D-PA 881 CG31439-PA 195..254 46..105 153 55 Plus
Muc96D-PA 881 CG31439-PA 238..298 46..105 153 55.7 Plus
Muc96D-PA 881 CG31439-PA 280..339 46..105 153 55 Plus
Muc96D-PA 881 CG31439-PA 295..354 46..105 153 55 Plus
Muc96D-PA 881 CG31439-PA 297..356 46..105 153 53.3 Plus
Muc96D-PA 881 CG31439-PA 313..372 46..105 153 55 Plus
CG34220-PA 726 CG34220-PA 66..115 59..105 153 66 Plus
CG34220-PA 726 CG34220-PA 116..175 46..105 153 55 Plus
CG34220-PA 726 CG34220-PA 105..165 46..105 152 57.4 Plus
CG34220-PA 726 CG34220-PA 532..583 54..105 152 61.5 Plus
CG14418-PB 284 CG14418-PB 102..266 164..291 151 30.3 Plus
CG14418-PA 327 CG14418-PA 145..309 164..291 151 30.3 Plus
CG34220-PA 726 CG34220-PA 80..131 54..105 151 59.6 Plus
CG34220-PA 726 CG34220-PA 113..172 46..105 151 53.3 Plus
Mur82C-PB 578 CG12586-PB 222..281 46..105 151 53.3 Plus
CG1468-PA 206 CG1468-PA 89..185 49..142 147 37.1 Plus
vsg-PC 183 CG16707-PC 11..118 3..105 146 36.1 Plus
vsg-PD 183 CG16707-PD 11..118 3..105 146 36.1 Plus
CG43798-PA 213 CG43798-PA 132..178 59..105 146 63.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11161-PA 322 GI11161-PA 1..242 1..218 280 42.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19936-PA 60 GL19936-PA 1..57 1..53 139 70.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28488-PA 307 GA28488-PA 1..241 1..230 298 54.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19256-PA 293 GM19256-PA 1..216 1..216 598 89.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16626-PA 294 GD16626-PA 1..251 1..250 522 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15292-PA 329 GJ15292-PA 200..244 171..215 167 75.6 Plus

AT20635.hyp Sequence

Translation from 631 to 1512

> AT20635.hyp
MHCLLQLSLAVALCALLAPSTTLAERRNVYRLGGRASDAQMEARFTSSIA
NKLTSLKGTTTTTTVAPTTTTTPTSTTETTTPTAPTTSTGTSTSTTTPTT
SDTTTGRAFPAIQDDVEEDDEEMPRAFEDEEDEGDDSLEDEDDDDDEESY
FVAAPSAGGNSNAVQQSSESGSLVRPSELQWRQFQQEQRNRRRIQRLQRE
HNQRIRSLLRRQRAAEKRSQQRLRRQRQQSRKRVSQRQRRNRNRSKAQRQ
RQRRNNMNRRRRQQQQRQRRHRQQQRRRLVRLMRRRRRGGRRN*

AT20635.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14420-PA 293 CG14420-PA 1..293 1..293 1477 100 Plus
CG14422-PA 294 CG14422-PA 8..294 4..293 350 34 Plus
CG14421-PA 238 CG14421-PA 1..232 1..272 342 34.8 Plus
CG14418-PB 284 CG14418-PB 124..277 130..292 183 31.2 Plus
CG14418-PA 327 CG14418-PA 167..320 130..292 183 31.2 Plus
CG14418-PB 284 CG14418-PB 102..266 164..291 151 30.3 Plus