BDGP Sequence Production Resources |
Search the DGRC for AT20876
Library: | AT |
Tissue Source: | Drosophila melanogaster adult testes |
Created by: | Ling Hong |
Date Registered: | 2000-06-08 |
Comments: | Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7 |
Original Plate Number: | 208 |
Well: | 76 |
Vector: | pOTB7 |
Associated Gene/Transcript | CG7059-RA |
Protein status: | AT20876.pep: gold |
Preliminary Size: | 1066 |
Sequenced Size: | 1237 |
Gene | Date | Evidence |
---|---|---|
CG7059 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7059 | 2002-01-03 | Blastp of sequenced clone |
CG7059 | 2003-01-01 | Sim4 clustering to Release 3 |
CG7059 | 2008-04-29 | Release 5.5 accounting |
CG7059 | 2008-08-15 | Release 5.9 accounting |
CG7059 | 2008-12-18 | 5.12 accounting |
1237 bp (1237 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075244
> AT20876.complete CAAAAACCAACTGCGCCGCGATAAAATTGTTTGCCAATAAGAATCGGGCT TAGTGCGGATTGGCATCCGAAAGATACAGGAACGTGGTGGCTGCAGCTGC AACGGGAAGACCATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCTCCCA ATTTATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAAAGTG ATTTCAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATTGAGT GAATTCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCGTCCA ATCCGAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGATCTC GTCAAACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGTGCCC ATTAAGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGACTGG TTGCCGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTTCAGG CCTGGCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAAGAAC CGCTACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTCCTCG CGGTGAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGAGTGA AACCCGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCGGGTA CTAATGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACATTGA GGGAATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGCGTGC CACGCGTCTATGAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGCTGCC ATCAATCTGGGGGATCAGGAGTATATTAGGCGGAAGACAGCCCAGGTGGC AGCCATTGGTGACTGATTGTGGAGCACTCCTCTCGACTTTTTTGGAATTT ACATCGATATGTGGCCGACTGCATTTACTTAAGCCTTTGCCGCTTAAAGT CCGAGAACATCGGCTGATAAGGATATTATGACTACTATTTATTGGTCTAC ACCATCTGATATTTTCGGCCAAAAATATACAATTTATACAAAATATAATT GATGGAGAAGATTACATATACGTACATAAATATAATAAAAATAAGCTATT TCGTTGTATGACGTCAAATTGGATGCTACACCCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7059-RA | 1498 | CG7059-RA | 304..1498 | 1..1195 | 5930 | 99.7 | Plus |
CG7059.d | 1582 | CG7059.d | 532..1582 | 145..1195 | 5210 | 99.7 | Plus |
CG7059.e | 1653 | CG7059.e | 603..1653 | 145..1195 | 5210 | 99.7 | Plus |
CG7059.d | 1582 | CG7059.d | 259..402 | 1..144 | 720 | 100 | Plus |
CG7059.e | 1653 | CG7059.e | 330..473 | 1..144 | 720 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 18214900..18215396 | 257..753 | 2485 | 100 | Plus |
chr3R | 27901430 | chr3R | 18215451..18215882 | 752..1183 | 2160 | 100 | Plus |
chr3R | 27901430 | chr3R | 18213472..18213615 | 1..144 | 720 | 100 | Plus |
chr3R | 27901430 | chr3R | 18214725..18214838 | 145..258 | 570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 22391368..22391864 | 257..753 | 2455 | 99.6 | Plus |
3R | 32079331 | 3R | 22391919..22392362 | 752..1195 | 2205 | 99.8 | Plus |
3R | 32079331 | 3R | 22389930..22390073 | 1..144 | 720 | 100 | Plus |
3R | 32079331 | 3R | 22391194..22391307 | 145..258 | 570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 22132199..22132695 | 257..753 | 2455 | 99.5 | Plus |
3R | 31820162 | 3R | 22132750..22133193 | 752..1195 | 2205 | 99.7 | Plus |
3R | 31820162 | 3R | 22130761..22130904 | 1..144 | 720 | 100 | Plus |
3R | 31820162 | 3R | 22132025..22132138 | 145..258 | 570 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1097..1171 | 1144..1071 | 111 | 66.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 18214725..18214837 | 145..257 | 100 | -> | Plus |
chr3R | 18213479..18213615 | 8..144 | 100 | -> | Plus |
chr3R | 18214901..18215395 | 258..752 | 100 | -> | Plus |
chr3R | 18215452..18215882 | 753..1183 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 1..804 | 113..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 1..804 | 113..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 1..804 | 113..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 1..804 | 113..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 1..804 | 113..916 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 151..1332 | 1..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 151..1332 | 1..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 151..1332 | 1..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 151..1332 | 1..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG7059-RA | 151..1332 | 1..1182 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22389930..22390073 | 1..144 | 100 | -> | Plus |
3R | 22391194..22391306 | 145..257 | 100 | -> | Plus |
3R | 22391369..22391863 | 258..752 | 99 | -> | Plus |
3R | 22391920..22392349 | 753..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22389930..22390073 | 1..144 | 100 | -> | Plus |
3R | 22391194..22391306 | 145..257 | 100 | -> | Plus |
3R | 22391369..22391863 | 258..752 | 99 | -> | Plus |
3R | 22391920..22392349 | 753..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22389930..22390073 | 1..144 | 100 | -> | Plus |
3R | 22391194..22391306 | 145..257 | 100 | -> | Plus |
3R | 22391369..22391863 | 258..752 | 99 | -> | Plus |
3R | 22391920..22392349 | 753..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 18215652..18215795 | 1..144 | 100 | -> | Plus |
arm_3R | 18216916..18217028 | 145..257 | 100 | -> | Plus |
arm_3R | 18217091..18217585 | 258..752 | 99 | -> | Plus |
arm_3R | 18217642..18218071 | 753..1183 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 22132200..22132694 | 258..752 | 99 | -> | Plus |
3R | 22132751..22133180 | 753..1183 | 99 | Plus | |
3R | 22130761..22130904 | 1..144 | 100 | -> | Plus |
3R | 22132025..22132137 | 145..257 | 100 | -> | Plus |
Translation from 112 to 915
> AT20876.pep MVFFKFLKSKLSQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGV QEALTVAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKED WRLCERHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFY TICSNPIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCV HGTVARALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLG DQEYIRRKTAQVAAIGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18444-PA | 265 | GF18444-PA | 1..264 | 3..266 | 1111 | 74.2 | Plus |
Dana\GF23292-PA | 255 | GF23292-PA | 1..252 | 15..266 | 500 | 41.7 | Plus |
Dana\GF17736-PA | 288 | GF17736-PA | 39..285 | 20..266 | 496 | 38.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11129-PA | 267 | GG11129-PA | 1..267 | 1..267 | 1396 | 96.6 | Plus |
Dere\GG17149-PA | 292 | GG17149-PA | 43..289 | 20..266 | 505 | 41.4 | Plus |
Dere\GG11648-PA | 255 | GG11648-PA | 1..252 | 15..266 | 501 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13344-PA | 265 | GH13344-PA | 1..265 | 3..267 | 930 | 62.3 | Plus |
Dgri\GH15422-PA | 247 | GH15422-PA | 1..244 | 23..266 | 505 | 39 | Plus |
Dgri\GH23221-PA | 255 | GH23221-PA | 1..252 | 15..266 | 493 | 40.9 | Plus |
Dgri\GH14297-PA | 255 | GH14297-PA | 1..252 | 15..266 | 493 | 40.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7059-PA | 267 | CG7059-PA | 1..267 | 1..267 | 1414 | 100 | Plus |
CG7059-PD | 262 | CG7059-PD | 7..262 | 12..267 | 1360 | 100 | Plus |
CG7059-PC | 253 | CG7059-PC | 1..253 | 15..267 | 1345 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 6..252 | 20..266 | 501 | 41.4 | Plus |
Pglym78-PB | 255 | CG1721-PB | 6..252 | 20..266 | 501 | 41.4 | Plus |
Pglym78-PA | 255 | CG1721-PA | 6..252 | 20..266 | 501 | 41.4 | Plus |
Pglym87-PA | 292 | CG17645-PA | 43..289 | 20..266 | 486 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22381-PA | 268 | GI22381-PA | 6..268 | 5..267 | 876 | 59.3 | Plus |
Dmoj\GI10280-PA | 293 | GI10280-PA | 45..290 | 21..266 | 521 | 39.1 | Plus |
Dmoj\GI23192-PA | 255 | GI23192-PA | 1..252 | 15..266 | 500 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24208-PA | 267 | GL24208-PA | 1..267 | 1..267 | 1091 | 73.4 | Plus |
Dper\GL23914-PA | 255 | GL23914-PA | 1..252 | 15..266 | 526 | 41.3 | Plus |
Dper\GL21564-PA | 309 | GL21564-PA | 60..306 | 20..266 | 526 | 41.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20068-PA | 267 | GA20068-PA | 1..267 | 1..267 | 1091 | 73.4 | Plus |
Dpse\GA20068-PB | 252 | GA20068-PB | 2..252 | 17..267 | 1040 | 74.1 | Plus |
Dpse\GA14593-PA | 290 | GA14593-PA | 41..287 | 20..266 | 534 | 42.6 | Plus |
Dpse\GA14392-PA | 255 | GA14392-PA | 1..252 | 15..266 | 526 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26427-PA | 267 | GM26427-PA | 1..267 | 1..267 | 1424 | 98.9 | Plus |
Dsec\GM26030-PA | 292 | GM26030-PA | 43..289 | 20..266 | 503 | 41.4 | Plus |
Dsec\GM12771-PA | 255 | GM12771-PA | 1..252 | 15..266 | 498 | 41.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20944-PA | 267 | GD20944-PA | 1..267 | 1..267 | 1424 | 98.9 | Plus |
Dsim\GD20588-PA | 341 | GD20588-PA | 43..286 | 20..263 | 497 | 41.5 | Plus |
Dsim\GD21420-PA | 429 | GD21420-PA | 6..112 | 20..127 | 280 | 50 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ24414-PA | 265 | GJ24414-PA | 1..265 | 3..267 | 911 | 61.1 | Plus |
Dvir\GJ11087-PA | 299 | GJ11087-PA | 51..296 | 21..266 | 507 | 40.7 | Plus |
Dvir\GJ14508-PA | 255 | GJ14508-PA | 1..252 | 15..266 | 498 | 41.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14265-PA | 267 | GK14265-PA | 1..266 | 1..266 | 1043 | 67.7 | Plus |
Dwil\GK11893-PA | 255 | GK11893-PA | 1..252 | 15..266 | 530 | 41.7 | Plus |
Dwil\GK11561-PA | 287 | GK11561-PA | 37..284 | 20..266 | 500 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10295-PA | 253 | GE10295-PA | 1..253 | 15..267 | 1308 | 95.7 | Plus |
Dyak\GE24538-PA | 292 | GE24538-PA | 43..289 | 20..266 | 502 | 41.4 | Plus |
Dyak\Pglym78-PA | 255 | GE23839-PA | 1..252 | 15..266 | 492 | 41.3 | Plus |
Translation from 112 to 915
> AT20876.hyp MVFFKFLKSKLSQFMTKTNRLVILRHGESDFNIENKFCGWHDAPLSEFGV QEALTVAIPALVQSELEFDVVYSSVLSRSRQTAELILSKLNCAYVPIKED WRLCERHYGNLTGCRKRVVADRYGEEQVQAWRRGYDCVPPPIDEKNRYFY TICSNPIFDDVPRGEFPLAESLHMCVDRVKPVWKEVRREVFQGTRVLMCV HGTVARALVQHIEGISNEAIEKVNIPNCVPRVYEFDLKTGGLVGAAINLG DQEYIRRKTAQVAAIGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG7059-PA | 267 | CG7059-PA | 1..267 | 1..267 | 1414 | 100 | Plus |
CG7059-PD | 262 | CG7059-PD | 7..262 | 12..267 | 1360 | 100 | Plus |
CG7059-PC | 253 | CG7059-PC | 1..253 | 15..267 | 1345 | 100 | Plus |
Pglym78-PC | 255 | CG1721-PC | 6..252 | 20..266 | 501 | 41.4 | Plus |
Pglym78-PB | 255 | CG1721-PB | 6..252 | 20..266 | 501 | 41.4 | Plus |