Clone AT20903 Report

Search the DGRC for AT20903

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:209
Well:3
Vector:pOTB7
Associated Gene/TranscriptCG13544-RA
Protein status:AT20903.pep: gold
Preliminary Size:1104
Sequenced Size:1248

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13544 2002-01-01 Sim4 clustering to Release 2
CG13544 2002-01-03 Blastp of sequenced clone
CG13544 2003-01-01 Sim4 clustering to Release 3
CG13544 2008-04-29 Release 5.5 accounting
CG13544 2008-08-15 Release 5.9 accounting
CG13544 2008-12-18 5.12 accounting

Clone Sequence Records

AT20903.complete Sequence

1248 bp (1248 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075246

> AT20903.complete
AACACTAAACATATACACTTAAATTAGGAAGAAGTAGAGCGGTTTATTTT
GCAGGATGTTCTCAGGACTTATACCCATGATGCAGCAGACTCGGAGGGCC
ACGGTTCCACTAGGTGGGGACAGCCGAAGTGGCAACACCGAGTCCCAAAT
TGGATCCAGTAAATCTTCTAATTGCAGATTGCACCTAATTTCGCGAACCG
GAAAGCTTCTTCTGGACTACAAGCAATACAAGGCAGCCCGAACTATCCAA
AACAACTGGCGGAAATTCTATTTTCGAAAGTATTTCAAGGATCTAAGAAA
GGCGGTCATCACGATTCAGCGCTGGTGGCGCGGATTCTCGGTCCGAAAAA
ACCACTTCAGGTATGTGGAGAACCTGCTGCAGAAGCGGGTTCAGGATCAC
CACCATCGGGCGGCCACCAAGATCCAGGCCCTATTCCGAGGATGGAAGAG
CCGGCGCACCATTCACGATCACAGCAAATTGCTCAGGAAGCAGGTGTGCG
CCGCCGAGGATCTGCTCAATTGCGTGGCCTTCAAGCTGCACCACCTGCTC
CGCACCTTCGCGATTCCAGGTGTATATTCGCTCAAGAACTCAAACTGCAT
GTCGCGAGTAGAGAAGCTGCTGGCCAGCTTGCATTTTCGCTTCCACAATG
GAAGGGTTAAGACGCAACTGGCTAAAGAACTGGCCGATCGAGGAAAGGAT
ACGGAAACTTTCAAGAGGAGCAACAAGTTCAGCAAAGTCCCATTCGAAGG
AGCCCGCTATTGGAGCCAATGCAAGCCAAAGTGCGAGGCCGCCCTGAAAA
TGTCCAAGAATATTGAAAGGCGCATGTACAGAATCATCGAGATTTACGAT
GCTTCACAGAGAGAAGCCCATGCGGCGTTGGTCGAAAAGAATAGGGCGTA
CAGAAAGCACAAGGGGCTTATGCAGAACATCAAGAAATCGGCGGAGAAGA
GTAAACGCGACTTCTGCGGCGATGTCATCGCCAGTATGAGACGCTGGAAA
ATCCTGGTGGACAACGATTTGACTGTGGACAAGAACATATTCAAAAACCC
GCAAAATTTGGAGAGGTTCGTTGCTGAAATATCGCAATATGCAAATGAGT
TCGAGAACTGCACCTGCTATTGCCGCATTCCCGTATTCACCGAAATCTAT
TGCGGCTAAATGTCATTAAAACCAGTAGTCTCGTACCAAGTAGTGAAAAT
AAATACAATTTTCTAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT20903.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-RA 1296 CG13544-RA 75..1295 1..1221 6000 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19026260..19026659 594..195 2000 100 Minus
chr2R 21145070 chr2R 19025520..19025835 1218..903 1580 100 Minus
chr2R 21145070 chr2R 19025892..19026205 908..595 1555 99.7 Minus
chr2R 21145070 chr2R 19026848..19026973 126..1 630 100 Minus
chr2R 21145070 chr2R 19026724..19026793 195..126 350 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23139820..23140219 594..195 1970 99.5 Minus
2R 25286936 2R 23139077..23139395 1221..903 1565 99.4 Minus
2R 25286936 2R 23139452..23139765 908..595 1525 99 Minus
2R 25286936 2R 23140408..23140533 126..1 615 99.2 Minus
2R 25286936 2R 23140284..23140353 195..126 350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23141019..23141418 594..195 1970 99.5 Minus
2R 25260384 2R 23140276..23140594 1221..903 1565 99.3 Minus
2R 25260384 2R 23140651..23140964 908..595 1525 99 Minus
2R 25260384 2R 23141607..23141732 126..1 615 99.2 Minus
2R 25260384 2R 23141483..23141552 195..126 350 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:18:33 has no hits.

AT20903.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:25 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19025520..19025835 903..1218 100 <- Minus
chr2R 19025898..19026205 595..902 100 <- Minus
chr2R 19026260..19026658 196..594 100 <- Minus
chr2R 19026724..19026792 127..195 100 <- Minus
chr2R 19026848..19026973 1..126 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:53 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 1..1104 56..1159 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:09 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 1..1104 56..1159 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:23:14 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 1..1104 56..1159 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:57 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 1..1104 56..1159 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:01:30 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 1..1104 56..1159 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:39 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 52..1269 1..1218 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:09 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 52..1269 1..1218 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:14 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 45..1262 1..1218 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:57 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 52..1269 1..1218 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:01:30 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
CG13544-RA 45..1262 1..1218 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:25 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23140284..23140352 127..195 100 <- Minus
2R 23140408..23140533 1..126 99   Minus
2R 23139080..23139395 903..1218 99 <- Minus
2R 23139458..23139765 595..902 99 <- Minus
2R 23139820..23140218 196..594 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:25 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23140284..23140352 127..195 100 <- Minus
2R 23140408..23140533 1..126 99   Minus
2R 23139080..23139395 903..1218 99 <- Minus
2R 23139458..23139765 595..902 99 <- Minus
2R 23139820..23140218 196..594 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:25 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23140284..23140352 127..195 100 <- Minus
2R 23140408..23140533 1..126 99   Minus
2R 23139080..23139395 903..1218 99 <- Minus
2R 23139458..23139765 595..902 99 <- Minus
2R 23139820..23140218 196..594 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:14 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19027343..19027741 196..594 99 <- Minus
arm_2R 19027807..19027875 127..195 100 <- Minus
arm_2R 19027931..19028056 1..126 99   Minus
arm_2R 19026981..19027288 595..902 99 <- Minus
arm_2R 19026603..19026918 903..1218 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:48 Download gff for AT20903.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23140297..23140612 903..1218 99 <- Minus
2R 23140675..23140982 595..902 99 <- Minus
2R 23141037..23141435 196..594 99 <- Minus
2R 23141501..23141569 127..195 100 <- Minus
2R 23141625..23141750 1..126 99   Minus

AT20903.pep Sequence

Translation from 55 to 1158

> AT20903.pep
MFSGLIPMMQQTRRATVPLGGDSRSGNTESQIGSSKSSNCRLHLISRTGK
LLLDYKQYKAARTIQNNWRKFYFRKYFKDLRKAVITIQRWWRGFSVRKNH
FRYVENLLQKRVQDHHHRAATKIQALFRGWKSRRTIHDHSKLLRKQVCAA
EDLLNCVAFKLHHLLRTFAIPGVYSLKNSNCMSRVEKLLASLHFRFHNGR
VKTQLAKELADRGKDTETFKRSNKFSKVPFEGARYWSQCKPKCEAALKMS
KNIERRMYRIIEIYDASQREAHAALVEKNRAYRKHKGLMQNIKKSAEKSK
RDFCGDVIASMRRWKILVDNDLTVDKNIFKNPQNLERFVAEISQYANEFE
NCTCYCRIPVFTEIYCG*

AT20903.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13314-PA 366 GF13314-PA 1..365 1..366 1077 56 Plus
Dana\GF14926-PA 315 GF14926-PA 2..309 58..364 480 34 Plus
Dana\GF14929-PA 578 GF14929-PA 33..344 29..339 378 34 Plus
Dana\GF14929-PA 578 GF14929-PA 321..509 45..232 320 38.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20062-PA 367 GG20062-PA 1..367 1..367 1683 83.7 Plus
Dere\GG25178-PA 352 GG25178-PA 9..334 28..349 484 35.7 Plus
Dere\GG25181-PA 391 GG25181-PA 52..343 46..354 393 33.3 Plus
Dere\GG25182-PA 307 GG25182-PA 40..278 35..278 339 32.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10387-PA 350 GH10387-PA 30..349 46..366 798 48.8 Plus
Dgri\GH23059-PA 329 GH23059-PA 22..323 51..354 653 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-PA 367 CG13544-PA 1..367 1..367 1944 100 Plus
CG31735-PC 312 CG31735-PC 4..294 60..349 486 36.4 Plus
CG31735-PA 312 CG31735-PA 4..294 60..349 486 36.4 Plus
CG12448-PC 352 CG12448-PC 40..351 34..366 428 30.4 Plus
CG18063-PD 371 CG18063-PD 43..355 45..354 398 30.6 Plus
CG18063-PE 372 CG18063-PE 44..356 45..354 398 30.6 Plus
CG18063-PC 372 CG18063-PC 44..356 45..354 398 30.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21130-PA 355 GI21130-PA 38..354 48..366 807 48.9 Plus
Dmoj\GI12944-PA 310 GI12944-PA 1..302 53..356 621 42 Plus
Dmoj\GI17366-PA 304 GI17366-PA 61..296 48..281 294 33.5 Plus
Dmoj\GI17367-PA 209 GI17367-PA 6..156 82..232 214 34.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11293-PA 587 GL11293-PA 241..586 23..366 1010 55.2 Plus
Dper\GL15300-PA 351 GL15300-PA 4..343 28..367 641 37.4 Plus
Dper\GL15302-PA 357 GL15302-PA 49..310 46..304 424 35.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12353-PA 543 GA12353-PA 201..542 27..366 1006 55.3 Plus
Dpse\GA29041-PA 635 GA29041-PA 269..626 14..366 640 37.5 Plus
Dpse\GA11642-PA 357 GA11642-PA 49..310 46..304 424 35.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15577-PA 359 GM15577-PA 1..359 1..367 1675 86.6 Plus
Dsec\GM18639-PA 353 GM18639-PA 39..335 45..349 394 33.3 Plus
Dsec\GM18642-PA 375 GM18642-PA 20..329 32..362 382 30.3 Plus
Dsec\GM18643-PA 208 GM18643-PA 43..197 45..198 299 37.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25077-PA 367 GD25077-PA 1..367 1..367 1915 96.5 Plus
Dsim\GD24026-PA 352 GD24026-PA 29..334 45..349 481 36.7 Plus
Dsim\GD24029-PA 393 GD24029-PA 38..347 32..362 391 30.6 Plus
Dsim\GD24030-PA 371 GD24030-PA 43..355 45..354 377 28.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:01:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18189-PA 334 GJ18189-PA 4..333 39..366 773 45.9 Plus
Dvir\GJ20979-PA 263 GJ20979-PA 1..262 101..366 660 47.7 Plus
Dvir\GJ18044-PA 246 GJ18044-PA 7..193 83..316 178 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19591-PA 368 GK19591-PA 1..367 1..366 952 49 Plus
Dwil\GK24765-PA 346 GK24765-PA 10..345 26..366 819 47.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11599-PA 362 GE11599-PA 1..362 1..367 1707 85 Plus
Dyak\GE21188-PA 350 GE21188-PA 4..342 22..359 500 35.6 Plus
Dyak\GE21222-PA 392 GE21222-PA 52..343 46..354 397 32.7 Plus
Dyak\GE21233-PA 391 GE21233-PA 45..375 45..354 336 26.6 Plus

AT20903.hyp Sequence

Translation from 55 to 1158

> AT20903.hyp
MFSGLIPMMQQTRRATVPLGGDSRSGNTESQIGSSKSSNCRLHLISRTGK
LLLDYKQYKAARTIQNNWRKFYFRKYFKDLRKAVITIQRWWRGFSVRKNH
FRYVENLLQKRVQDHHHRAATKIQALFRGWKSRRTIHDHSKLLRKQVCAA
EDLLNCVAFKLHHLLRTFAIPGVYSLKNSNCMSRVEKLLASLHFRFHNGR
VKTQLAKELADRGKDTETFKRSNKFSKVPFEGARYWSQCKPKCEAALKMS
KNIERRMYRIIEIYDASQREAHAALVEKNRAYRKHKGLMQNIKKSAEKSK
RDFCGDVIASMRRWKILVDNDLTVDKNIFKNPQNLERFVAEISQYANEFE
NCTCYCRIPVFTEIYCG*

AT20903.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13544-PA 367 CG13544-PA 1..367 1..367 1944 100 Plus
CG31735-PC 312 CG31735-PC 4..294 60..349 486 36.4 Plus
CG31735-PA 312 CG31735-PA 4..294 60..349 486 36.4 Plus
CG12448-PC 352 CG12448-PC 40..351 34..366 428 30.4 Plus
CG18063-PD 371 CG18063-PD 43..355 45..354 398 30.6 Plus