Clone AT20942 Report

Search the DGRC for AT20942

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:209
Well:42
Vector:pOTB7
Associated Gene/TranscriptCG1690-RA
Protein status:AT20942.pep: gold
Preliminary Size:578
Sequenced Size:1094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1690 2002-01-01 Sim4 clustering to Release 2
CG1690 2002-01-18 Blastp of sequenced clone
CG1690 2003-01-01 Sim4 clustering to Release 3
CG1690 2008-04-29 Release 5.5 accounting
CG1690 2008-08-15 Release 5.9 accounting
CG1690 2008-12-18 5.12 accounting

Clone Sequence Records

AT20942.complete Sequence

1094 bp (1094 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089384

> AT20942.complete
GTCAAAACTAGTTTTCACCTGCCAGTGTTTAAGGCCAAAAATCTTTGATT
TTACGAACGTTCGTCAACATAAATTGTTGTACTAAATTCAAAGAAACTAA
ATCCGCTTCCAAGACGCGATTACAGTGATTGCACACTACACCCAATATTA
GGCGATTAAATTATTTGTACGCTCCAACGATTAAAAAACTCAATACCCAA
TGGATGCCGCCGAGGGTCAAAGCTTGGTGATCAAAATGGCGCAAAAGAAC
AAGGAGACCCAGACTGTGAAGCTGGTGCCCGGAGGCGGTCTGGTCAACAA
CTGGTTTGCCCCGGCTACGTATGGGCCAGCAGGGATTCCATTTGGGGCTA
GTCCCATGATCCCACCGCCGCCCGTTCCGAATCACAGCGTATCGTGCCAG
TTTTACATGGACCGGGAGGAGCAGCTGTACCGCCGCGCCTGCCAGATGAA
GGGCATCCGGGTGGAGCGGGTCTCTGAGATCCGCGAGGAGGAGGACGACT
CGAACGGCTCCGAGGAGGAGCCTTCGAAGGGCATCCGCTACCGCTACACC
CTGGACGAGATGAAAAGCTTCAACCCATACCGTTTTATCAACTTTTAAAT
GTTCCCAAAACGTCCCAAATAGCCGTCATAGACGTCATAGCCGTCACACT
TTCACTTTTACCCACATCGCACCGTCAGCACCTCAATATTCAAGTTGATT
TAAGATCCATAACTAGGTCTAGCTTCGCCACCCTACCCACATAAGATGTC
AGCTTATAGGTTTATCTTGCATGCCTAAAAATCGCAAGGAGAATCACACG
AAAAACAGGAACCCAGGACACTGCCCATTTGCTTGTTGTTGCCGTATTTC
CATGTAGACTCAAGATCCAAGACTAGCACTAACTTCGCCACTACTTCCAC
AATTTCACATTAGATGCAAGATTATATGGACATCGTGCATGCCTCCAAAG
CGTATTGGGAATCACAAATGAAACAGGAACCCCGGACACGGCTCATTTGC
TTGTTGTTACCGTATCACTCGCCCGATGAAAACAATAAAGAATTGTTCAT
AAATGACATCCTGGGATGTCAACAAAAAAAAAAAAAAAAAAAAA

AT20942.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-RA 1134 CG1690-RA 36..1113 1..1078 5360 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5644363..5645182 1073..254 4100 100 Minus
chr2R 21145070 chr2R 5645250..5645503 254..1 1270 100 Minus
chr2R 21145070 chr2R 5644421..5644530 847..738 190 78.2 Minus
chr2R 21145070 chr2R 5644589..5644698 1015..906 190 78.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9756923..9757747 1078..254 4095 99.8 Minus
2R 25286936 2R 9757815..9758068 254..1 1270 100 Minus
2R 25286936 2R 9756986..9757095 847..738 190 78.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9758122..9758946 1078..254 4095 99.7 Minus
2R 25260384 2R 9759014..9759267 254..1 1270 100 Minus
Blast to na_te.dros performed on 2019-03-15 11:37:31 has no hits.

AT20942.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:38:32 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5644363..5645181 255..1073 100 <- Minus
chr2R 5645250..5645503 1..254 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:15:55 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..399 200..598 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:47:14 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..399 200..598 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:31:33 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..399 200..598 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:11 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..399 200..598 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:39:22 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..399 200..598 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:25 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..1073 1..1073 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:47:14 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..1073 1..1073 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:31:33 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..1073 1..1073 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:11 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..1073 1..1073 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:39:22 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
CG1690-RA 1..1073 1..1073 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:32 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9756928..9757746 255..1073 99 <- Minus
2R 9757815..9758068 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:32 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9756928..9757746 255..1073 99 <- Minus
2R 9757815..9758068 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:38:32 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9756928..9757746 255..1073 99 <- Minus
2R 9757815..9758068 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:31:33 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5644433..5645251 255..1073 99 <- Minus
arm_2R 5645320..5645573 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:56 Download gff for AT20942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9758127..9758945 255..1073 99 <- Minus
2R 9759014..9759267 1..254 100   Minus

AT20942.pep Sequence

Translation from 199 to 597

> AT20942.pep
MDAAEGQSLVIKMAQKNKETQTVKLVPGGGLVNNWFAPATYGPAGIPFGA
SPMIPPPPVPNHSVSCQFYMDREEQLYRRACQMKGIRVERVSEIREEEDD
SNGSEEEPSKGIRYRYTLDEMKSFNPYRFINF*

AT20942.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11482-PA 132 GF11482-PA 1..132 1..132 506 73.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25265-PA 132 GG25265-PA 1..132 1..132 597 79.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22849-PA 119 GH22849-PA 1..117 1..132 274 52.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-PB 132 CG1690-PB 1..132 1..132 704 100 Plus
CG1690-PA 132 CG1690-PA 1..132 1..132 704 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21228-PA 115 GI21228-PA 1..113 1..132 356 63.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17322-PA 131 GL17322-PA 1..129 1..132 223 45.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14205-PA 131 GA14205-PA 1..129 1..132 226 45.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20582-PA 80 GM20582-PA 1..80 53..132 408 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10054-PA 132 GD10054-PA 1..132 1..132 673 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20831-PA 115 GJ20831-PA 1..113 1..132 354 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15617-PA 154 GK15617-PA 1..152 1..130 336 53.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22094-PA 132 GE22094-PA 1..132 1..132 638 87.9 Plus

AT20942.hyp Sequence

Translation from 199 to 597

> AT20942.hyp
MDAAEGQSLVIKMAQKNKETQTVKLVPGGGLVNNWFAPATYGPAGIPFGA
SPMIPPPPVPNHSVSCQFYMDREEQLYRRACQMKGIRVERVSEIREEEDD
SNGSEEEPSKGIRYRYTLDEMKSFNPYRFINF*

AT20942.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1690-PB 132 CG1690-PB 1..132 1..132 704 100 Plus
CG1690-PA 132 CG1690-PA 1..132 1..132 704 100 Plus