Clone AT21004 Report

Search the DGRC for AT21004

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:210
Well:4
Vector:pOTB7
Associated Gene/TranscriptCG17991-RA
Protein status:AT21004.pep: gold
Preliminary Size:885
Sequenced Size:1108

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17991 2002-01-01 Sim4 clustering to Release 2
CG17991 2002-01-18 Blastp of sequenced clone
CG17991 2003-01-01 Sim4 clustering to Release 3
CG17991 2008-04-29 Release 5.5 accounting
CG17991 2008-08-15 Release 5.9 accounting
CG17991 2008-12-18 5.12 accounting

Clone Sequence Records

AT21004.complete Sequence

1108 bp (1108 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089386

> AT21004.complete
ATTAATTGTAAACATATGCCCTGGAGTTTTCTCAGACTCAAGTTTTATAT
ACAACAAGATCAATAATGGCTAGCAACGTTGCTGCGCCACAAGCTTCAGC
TGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAGA
CCGATAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCGA
GGAACCAATAAGTGGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACGA
GAAGACCCGAATAAACAACAATCTGCAAGCCGTTTCCTGTCCACAATGCC
AAACGGAGTACACCATTGCATACCCGAATCTCTGGATTTTCGATAGGGCT
TTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATTGCCTGGC
CAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGAG
CAAAAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAATA
ATTCAATCGGGAGACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCTC
GGTAGTTCTGATACTTGGACGCTTAATTCCCTGGGAAGATGCCCTGTTGC
GCTTCATTAGAATATGTTATTCATTGCTGCGAAGTCTTTCAATGATGTGC
CTAGGACGGAAATATGACCACCAGACCGAACCATACCCTTCTGCACCAAT
GACCGAATATTCGGCATCGCGGGTGGTCTGTGGAGCCATCCTCTTGCCCA
CCATATCCATGTACGTGGGTAGAGTTCTTTACAGCTCTGTCGACGATAGA
TTGCAACAAACTCTTCTTGGGGGATTGACTTTCATAGCGATCAAGGGATT
CCTCAAAATGTACCTCATGCATAGCCAATACATCTGTCGTATGAAGCGTC
GTGTTTTGGATTACACGAAGGAAAACCTAGCGGAGGCAGACGGACACTAG
GTAAACTCAAGATCTGCAAGAGAAGCAAGAAGTAATTTGAATATCTATTT
AAATTGTAAAGTGTACAATTTTCCTAAGACTACGTGTCAATAGTGCATTC
TTACTACCAATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

AT21004.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-RA 1070 CG17991-RA 1..1067 1..1067 5260 99.5 Plus
CG18766.a 1692 CG18766.a 1635..1692 1067..1010 275 98.2 Minus
CG18766.c 1790 CG18766.c 1733..1790 1067..1010 275 98.2 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23064197..23065258 1..1062 5250 99.6 Plus
chr3R 27901430 chr3R 222979..223173 316..122 210 73.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27241267..27242333 1..1067 5260 99.5 Plus
3R 32079331 3R 4397260..4397454 316..122 210 73.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26982098..26983164 1..1067 5260 99.5 Plus
3R 31820162 3R 4138149..4138234 258..173 190 81.3 Minus
Blast to na_te.dros performed on 2019-03-15 21:28:13 has no hits.

AT21004.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:28:57 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23064197..23065260 1..1064 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:16:00 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..885 66..950 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:46:57 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..885 66..950 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:49:05 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..885 66..950 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:15:00 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..885 66..950 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:29 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..885 66..950 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:11:09 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:46:56 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:49:05 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:15:00 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..1064 1..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:29 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
CG17991-RA 1..1064 1..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:57 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27241267..27242330 1..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:57 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27241267..27242330 1..1064 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:28:57 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27241267..27242330 1..1064 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:49:05 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23066989..23068052 1..1064 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:44 Download gff for AT21004.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26982098..26983161 1..1064 99   Plus

AT21004.pep Sequence

Translation from 65 to 949

> AT21004.pep
MASNVAAPQASAGGDSTELERCCWICFETDKEAGRQAWVNPCLCRGTNKW
VHQSCISLWIDEKTRINNNLQAVSCPQCQTEYTIAYPNLWIFDRALELTN
DLILTNLYNCLANVFTVVFAYWSAVSFGAKTYLQITGQEGHVHQIIQSGD
LLVVLVGFPLISVVLILGRLIPWEDALLRFIRICYSLLRSLSMMCLGRKY
DHQTEPYPSAPMTEYSASRVVCGAILLPTISMYVGRVLYSSVDDRLQQTL
LGGLTFIAIKGFLKMYLMHSQYICRMKRRVLDYTKENLAEADGH*

AT21004.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16812-PA 403 GF16812-PA 66..348 13..288 750 52.3 Plus
Dana\GF21788-PA 469 GF21788-PA 62..350 9..288 569 41.1 Plus
Dana\GF20973-PA 346 GF20973-PA 42..330 20..290 439 33.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11538-PA 306 GG11538-PA 1..306 1..294 1060 65.7 Plus
Dere\GG11621-PA 388 GG11621-PA 50..342 2..288 744 51.5 Plus
Dere\GG18582-PA 384 GG18582-PA 32..332 2..288 538 37.3 Plus
Dere\GG17980-PA 325 GG17980-PA 27..316 16..287 440 36.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14233-PA 413 GH14233-PA 89..363 20..288 702 50.5 Plus
Dgri\GH12186-PA 303 GH12186-PA 15..287 18..288 538 40.9 Plus
Dgri\GH24859-PA 290 GH24859-PA 5..289 20..284 395 33.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-PA 294 CG17991-PA 1..294 1..294 1563 100 Plus
CG9855-PC 382 CG9855-PC 46..335 2..288 715 52.4 Plus
CG9855-PA 382 CG9855-PA 46..335 2..288 715 52.4 Plus
CG16781-PA 383 CG16781-PA 38..332 20..294 493 37.7 Plus
CG16781-PB 386 CG16781-PB 41..335 20..294 493 37.7 Plus
CG10761-PA 323 CG10761-PA 31..316 20..287 434 35.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22140-PA 421 GI22140-PA 76..354 16..288 707 50.5 Plus
Dmoj\GI14409-PA 305 GI14409-PA 10..301 15..291 441 35.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22354-PA 389 GL22354-PA 72..346 13..288 714 51.8 Plus
Dper\GL20188-PA 337 GL20188-PA 18..319 7..288 381 31.4 Plus
Dper\GL13124-PA 345 GL13124-PA 22..266 11..288 369 34.8 Plus
Dper\GL13782-PA 311 GL13782-PA 20..309 18..286 328 32.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22076-PB 398 GA22076-PB 72..353 13..288 729 52.1 Plus
Dpse\GA23069-PA 404 GA23069-PA 39..322 11..288 476 39.5 Plus
Dpse\GA10551-PA 339 GA10551-PA 20..321 7..288 376 31.1 Plus
Dpse\GA26791-PA 311 GA26791-PA 20..309 18..286 333 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10380-PA 285 GM10380-PA 1..285 1..294 1105 74.3 Plus
Dsec\GM10705-PA 382 GM10705-PA 57..335 15..288 738 52.3 Plus
Dsec\GM12725-PA 388 GM12725-PA 34..326 16..292 492 36.2 Plus
Dsec\GM11202-PA 325 GM11202-PA 17..316 1..287 434 34.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19682-PA 382 GD19682-PA 57..335 15..288 730 52 Plus
Dsim\GD16331-PA 388 GD16331-PA 34..326 16..292 526 37.8 Plus
Dsim\GD24575-PA 320 GD24575-PA 17..316 1..287 429 34.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24258-PA 420 GJ24258-PA 67..345 16..288 717 51.6 Plus
Dvir\GJ19393-PA 367 GJ19393-PA 18..293 16..288 529 40.8 Plus
Dvir\GJ18757-PA 307 GJ18757-PA 4..300 7..288 460 34.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13759-PA 401 GK13759-PA 67..347 15..288 729 51.9 Plus
Dwil\GK10150-PA 387 GK10150-PA 26..319 18..294 573 42 Plus
Dwil\GK10149-PA 307 GK10149-PA 26..302 20..287 456 38 Plus
Dwil\GK19914-PA 329 GK19914-PA 26..314 14..288 437 35.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25355-PA 374 GE25355-PA 32..326 2..288 746 51.9 Plus
Dyak\GE16894-PA 387 GE16894-PA 34..316 16..288 466 38.2 Plus
Dyak\GE17474-PA 327 GE17474-PA 28..318 15..287 426 32.9 Plus

AT21004.hyp Sequence

Translation from 65 to 949

> AT21004.hyp
MASNVAAPQASAGGDSTELERCCWICFETDKEAGRQAWVNPCLCRGTNKW
VHQSCISLWIDEKTRINNNLQAVSCPQCQTEYTIAYPNLWIFDRALELTN
DLILTNLYNCLANVFTVVFAYWSAVSFGAKTYLQITGQEGHVHQIIQSGD
LLVVLVGFPLISVVLILGRLIPWEDALLRFIRICYSLLRSLSMMCLGRKY
DHQTEPYPSAPMTEYSASRVVCGAILLPTISMYVGRVLYSSVDDRLQQTL
LGGLTFIAIKGFLKMYLMHSQYICRMKRRVLDYTKENLAEADGH*

AT21004.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17991-PA 294 CG17991-PA 1..294 1..294 1563 100 Plus
CG9855-PC 382 CG9855-PC 46..335 2..288 715 52.4 Plus
CG9855-PA 382 CG9855-PA 46..335 2..288 715 52.4 Plus
CG16781-PA 383 CG16781-PA 38..332 20..294 493 37.7 Plus
CG16781-PB 386 CG16781-PB 41..335 20..294 493 37.7 Plus