Clone AT21108 Report

Search the DGRC for AT21108

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:211
Well:8
Vector:pOTB7
Associated Gene/TranscriptCG13870-RB
Protein status:AT21108.pep: gold
Preliminary Size:1812
Sequenced Size:1930

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13870 2002-09-15 Blastp of sequenced clone
CG13870 2003-01-01 Sim4 clustering to Release 3
CG13870 2008-04-29 Release 5.5 accounting
CG13870 2008-08-15 Release 5.9 accounting
CG13870 2008-12-18 5.12 accounting

Clone Sequence Records

AT21108.complete Sequence

1930 bp (1930 high quality bases) assembled on 2002-09-15

GenBank Submission: BT001337

> AT21108.complete
CACAAAACTCGGTAAAGTTAATGTATATATTTAAGAAATAAAGTAGTACA
GCAAACATGGAGAAGAGCACACTGAAGATCAATAATGAGGACCGGCAGAA
TTTTGTGGCCACACGGATGAGTCTGCCGCTCTTTATGGTGTCCCGCAATC
GTATTAGAAAGGAAAATTTACCGCGAGTGGAGAAGCAATTTAAGTTGGCC
GAAAACAGACGAGAGGCCTTCAGCAAAGCCACCTTTGATCACTACCGCCA
CATTACGGGTTTCGACAAGACGCCAAAGAATCCGTATCCGGAACGTCGAA
GGCTACACATCGATCGGAGTATGACCAAATGGAGGGGCTGGCAACTGCCC
CCAAATCATTACGGAGTGCCCCCGGAACCGTATCTCCGACTGAAGGGCAC
CAAGGGCTCCGTATTCGCCAAGCCGCACACGAATCATAGTCGCGTCTCCA
TTAAACCACCGCCATATCATTTTTACGAACTTCCGGCGGAAATCGAGAGG
CTCTTCAAGCGCCCGAACTTGCAAAAGGGTATCTTCCTTTCAAATGCCCG
CGATCGTCGACCGACCACACACGCCATGATTTCCAATCTGTCTGGCTGCT
GGCGTAATCCCAAGGATGCCGGTCCCTGCGACACCCATACAAACATCTTT
GAGTTGGCCGCAAATGCTGTACCCGTCACAAAGGCGCCACGCCCTAATCC
GCACCTGTTTCTGCGCCACTCCTGTGTGCCCACCAAGCCCAATCGACTGA
TCCGACGCCATATCAGCATGGAACCGGCTCCAGGTCGCTACTGCACCAGT
TATCCGAATGTGTGTCCCTGTCCGTCTGGTAAGACCAGTGTGCCGGGACT
ACAGCTGATGATTGATGACCAGAAGCGCCTGAAGTTTCGCCGCCTGCCAT
TTGAAAGGATCAGTCGAAAGCGACTCTGTGAGCCGGATTGGCGCCATGTC
GAGGGCCAAGGCCATCGTCATGTCTTCCTAATGGGACGCAAAGATAGACC
CAAGCCCACCAAGAAACCCACTTCTTCCAAAAAGCAGGGCAAGCCGATAA
GCATGTATGCCGATTCCAAGTACATTAACATGCTGAGCCAGCCGCAGCGA
CATCCCATTTCCATTCGGGCGTATCCGGTTCCTCCGTACGTGCCCAAGAT
CACCTACAACTGTGCAGCCAAGCGGGTGATCCGCAAGCAATTGAAGAACA
ACAAGAAGATCGCCTTCAATAGTGGCCAGGAGCGATGGAAGGATGGCGAA
CGACCGATGCAGCTGACCGCACGCCAACTGGAGGCCATCAAGCAGAAGCT
ACCGCCGGAGAGGCGACTGATGGACTATCCCATTGAGCTGCCGGAGGTGA
TTCCCAGTCGACTGACCCAGGTGCCCGATCACCAGAGGGTCACCTACATG
CCCAAGTTGCGCAAGCGTCTGTTCAAGTTCCTGCCGATTCCCGGTGCTCG
GGTCCTGGTCACCGACAGCGATATACGTCCGGACATTGTTTTCGATCCGG
AGCACCCGACCGGACTGTACCGGCGCAAGATCGATGAGACCGCGTTCTAC
AAGGACTCCGTGTTGCGGGCGATGGAGAATAAGGAGGGTTCAGATGCTAC
CGGTTTGAACGAATCACAGTCGCAATCGCAGTCCCAATTGGATTCGCCCC
ATCAGTCCATGATCCGAAACAATGGTAGCGCTGCGGATCCGTTGGAACCC
AAGAGCGCTTCCCAGATATCATTCCATGAATAAAATGGCCAGCGGCTCTG
CTCCACGTTCGTTCCCGTTTCGAATCCATTTCGTTTTTGATTTATGATCC
ACGCTCCAGTGAATTCACGTGGCCACATGAAGCTAAGGCAAGAACTAAGT
GTGATGGCCGAAGAAAATAAGCTAAAAAGTCCTAAATAAAGATGGGAAAA
TTATTCACTTGGAAAAAAAAAAAAAAAAAA

AT21108.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-RB 1921 CG13870-RB 10..1921 1..1912 9560 100 Plus
CG13870-RA 2125 CG13870-RA 299..2014 201..1916 8580 100 Plus
CG13870-RA 2125 CG13870-RA 69..269 1..201 1005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16231652..16233020 544..1912 6800 99.8 Plus
chr2R 21145070 chr2R 16231197..16231539 201..543 1700 99.7 Plus
chr2R 21145070 chr2R 16230856..16231000 1..145 710 99.3 Plus
chr2R 21145070 chr2R 16231058..16231114 145..201 285 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20344650..20346022 544..1916 6865 100 Plus
2R 25286936 2R 20344195..20344537 201..543 1715 100 Plus
2R 25286936 2R 20343854..20343998 1..145 725 100 Plus
2R 25286936 2R 20344056..20344112 145..201 285 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20345849..20347221 544..1916 6865 100 Plus
2R 25260384 2R 20345394..20345736 201..543 1715 100 Plus
2R 25260384 2R 20345053..20345197 1..145 725 100 Plus
2R 25260384 2R 20345255..20345311 145..201 285 100 Plus
Blast to na_te.dros performed on 2019-03-16 05:40:02 has no hits.

AT21108.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:40:57 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16230856..16230999 1..144 99 -> Plus
chr2R 16231058..16231114 145..201 100 -> Plus
chr2R 16231198..16231539 202..543 99 -> Plus
chr2R 16231652..16233020 544..1912 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:16:04 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 1..1677 57..1733 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:15:12 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 1..1677 57..1733 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:43:07 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 1..1677 57..1733 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:06:07 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 1..1677 57..1733 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:07:16 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 1..1677 57..1733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:38:39 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 10..1782 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:15:11 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 10..1782 1..1773 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:43:07 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 10..1921 1..1912 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:06:08 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 10..1782 1..1773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:07:16 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
CG13870-RB 10..1921 1..1912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:57 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20343854..20343997 1..144 100 -> Plus
2R 20344056..20344112 145..201 100 -> Plus
2R 20344196..20344537 202..543 100 -> Plus
2R 20344650..20346018 544..1912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:57 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20343854..20343997 1..144 100 -> Plus
2R 20344056..20344112 145..201 100 -> Plus
2R 20344196..20344537 202..543 100 -> Plus
2R 20344650..20346018 544..1912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:40:57 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20343854..20343997 1..144 100 -> Plus
2R 20344056..20344112 145..201 100 -> Plus
2R 20344196..20344537 202..543 100 -> Plus
2R 20344650..20346018 544..1912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:43:07 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16231359..16231502 1..144 100 -> Plus
arm_2R 16231561..16231617 145..201 100 -> Plus
arm_2R 16231701..16232042 202..543 100 -> Plus
arm_2R 16232155..16233523 544..1912 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:38:04 Download gff for AT21108.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20345395..20345736 202..543 100 -> Plus
2R 20345849..20347217 544..1912 100   Plus
2R 20345053..20345196 1..144 100 -> Plus
2R 20345255..20345311 145..201 100 -> Plus

AT21108.pep Sequence

Translation from 56 to 1732

> AT21108.pep
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAEN
RREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMTKWRGWQLPPN
HYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFYELPAEIERLF
KRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGPCDTHTNIFEL
AANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEPAPGRYCTSYP
NVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRLCEPDWRHVEG
QGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYINMLSQPQRHP
ISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSGQERWKDGERP
MQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVPDHQRVTYMPK
LRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRRKIDETAFYKD
SVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNGSAADPLEPKS
ASQISFHE*

AT21108.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12264-PA 569 GF12264-PA 1..568 1..557 2198 75.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22031-PA 566 GG22031-PA 1..566 1..558 2752 91.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20834-PA 571 GH20834-PA 1..521 1..509 1700 62.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 558 CG13870-PB 1..558 1..558 2999 100 Plus
CG13870-PA 568 CG13870-PA 1..568 1..558 2978 98.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20936-PA 574 GI20936-PA 8..543 6..526 1622 59.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17661-PA 632 GL17661-PA 1..570 1..555 1918 63.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12586-PA 635 GA12586-PA 1..527 1..512 1927 67.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22013-PA 566 GM22013-PA 1..566 1..558 2853 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11512-PA 558 GD11512-PA 1..558 1..558 2868 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20661-PA 581 GJ20661-PA 1..565 1..556 1741 60 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15978-PA 621 GK15978-PA 3..513 2..510 1742 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12109-PA 564 GE12109-PA 1..564 1..558 2752 91.5 Plus

AT21108.hyp Sequence

Translation from 56 to 1732

> AT21108.hyp
MEKSTLKINNEDRQNFVATRMSLPLFMVSRNRIRKENLPRVEKQFKLAEN
RREAFSKATFDHYRHITGFDKTPKNPYPERRRLHIDRSMTKWRGWQLPPN
HYGVPPEPYLRLKGTKGSVFAKPHTNHSRVSIKPPPYHFYELPAEIERLF
KRPNLQKGIFLSNARDRRPTTHAMISNLSGCWRNPKDAGPCDTHTNIFEL
AANAVPVTKAPRPNPHLFLRHSCVPTKPNRLIRRHISMEPAPGRYCTSYP
NVCPCPSGKTSVPGLQLMIDDQKRLKFRRLPFERISRKRLCEPDWRHVEG
QGHRHVFLMGRKDRPKPTKKPTSSKKQGKPISMYADSKYINMLSQPQRHP
ISIRAYPVPPYVPKITYNCAAKRVIRKQLKNNKKIAFNSGQERWKDGERP
MQLTARQLEAIKQKLPPERRLMDYPIELPEVIPSRLTQVPDHQRVTYMPK
LRKRLFKFLPIPGARVLVTDSDIRPDIVFDPEHPTGLYRRKIDETAFYKD
SVLRAMENKEGSDATGLNESQSQSQSQLDSPHQSMIRNNGSAADPLEPKS
ASQISFHE*

AT21108.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13870-PB 558 CG13870-PB 1..558 1..558 2999 100 Plus
CG13870-PA 568 CG13870-PA 1..568 1..558 2978 98.2 Plus