Clone AT21373 Report

Search the DGRC for AT21373

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:213
Well:73
Vector:pOTB7
Associated Gene/TranscriptCG14017-RB
Protein status:AT21373.pep: validated full length
Preliminary Size:730
Sequenced Size:1214

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14017 2002-01-01 Sim4 clustering to Release 2
CG14017 2002-04-21 Blastp of sequenced clone
CG14017 2008-04-29 Release 5.5 accounting
CG14017 2008-08-15 Release 5.9 accounting
CG14017 2008-12-18 5.12 accounting

Clone Sequence Records

AT21373.complete Sequence

1214 bp (1214 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113288

> AT21373.complete
GTCACCACATGTTTTTGGCTTACACATATATATTCGTATATTAATAGGTC
TATTCAATCATTTGTATTTTTAACCCACGACATGGAGGACTCACAAAGGA
AACACGCCGGTTCCAAAGGATTTCGAGCTTTGGAAAATCGAAAACAAGAC
ATCGCCTACAATCACTATTTGAATTCGTTTGTCAAGCTGGAGGACAGACG
GTATCTACCCAACGATAATGTGATACATCAACTAGTCCCCCTGAGGGCAG
CAGTGGGAACAATCGTGATGACACCCACCCAGTTCAACGAGGTGCACTTC
TCTCCACTGGGAACGTGCTTCTATTTCAGCGAGAATAATGTCCCCAATGA
TCCACTGACTATGGCACTTCTAGAGCGCGAAAAGCTGAATGCAACTAAAA
CGATTTCATGCATTTACTCATAGACCATCGTATTCGTGAGCACCCGAGAT
TCCAAGGGCTTCAATATCTCCGGCTACATCGATTTGGAGCACAGTTTGCG
TAGATACAAGACCGCTGGATCGAAGTCTCATCCGTGGGCAGATATTTTCG
CCGGTCGCCGCCGCCTGGAGCCCAATCATCAGGATCTAAGCTTCATCAAT
TGGAGCAACGGCAGGGTGCATTCCAACGACTCGGATAACTACAAGGTTAT
TCCGGATGCCGTCAAGGGTTTGTGCTTCGCGCACAAGGGCGATGGTTCGA
TGCTCAGCATAGAGAAGTATATAACCGAAGAGCATCCGTTGTGCAAATTT
ATAGAATCGCCAAAACACGGCTCCACTGTCGTCTACGATCATTATATACG
GCGAAAGATGTGATTGCTGCCAGATCACATTATAATCGAAACATAAATTC
AGAATGCACTTCAACCGATCATCAAAGAGCTTTTACTGGCAATCAAAGCA
TTTTAGAAATCAAAACAATATCGTGATCATGAAACTGGCAGCCAGGGAGA
GGATAAACAATCGCCAGACTGACTGATGCCGCCGACGTCATGGACAAGCG
TCGCAGGGAAAATGCGCGAGAGCAAGTTGCGTATACGACGTGTGGTACTC
GGACTCTCCGCCGTGAACTGGAGAGAGCTTCCCATCGGCTGAGATGACAT
TCTTGGCCGTGCCAGTGAGTTCCGGCAGTCAGTAGGCGTGCGAAGCGCTC
CAAGACTGGGTGCTTCCGTTGCGTGAAAATAAATTGTGAAGAAGAAAAAA
AAAAAAAAAAAAAA

AT21373.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14017-RA 1182 CG14017-RA 409..1182 424..1197 3855 99.8 Plus
CG14017-RB 609 CG14017-RB 1..609 1..609 3045 100 Plus
CG14017-RA 1182 CG14017-RA 1..408 1..408 2040 100 Plus
GluRIIA-RI 3251 GluRIIA-RI 1..67 1131..1197 335 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5553450..5554235 409..1194 3915 99.9 Plus
chr2L 23010047 chr2L 5552995..5553402 1..408 2040 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5554352..5555140 409..1197 3930 99.9 Plus
2L 23513712 2L 5553897..5554304 1..408 2040 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5554352..5555140 409..1197 3930 99.8 Plus
2L 23513712 2L 5553897..5554304 1..408 2040 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:54:17 has no hits.

AT21373.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:55:14 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5552995..5553402 1..408 100 -> Plus
chr2L 5553450..5554235 409..1194 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:16:19 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..717 82..813 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:56 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..717 82..813 97   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:50:08 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..717 82..813 97   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:19 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..717 82..813 97   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:50:07 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..717 82..813 97   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:09 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..1179 1..1194 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:56 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..1179 1..1194 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:50:08 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..1179 1..1194 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:20 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..1179 1..1194 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:50:07 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
CG14017-RA 1..1179 1..1194 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:14 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5553897..5554304 1..408 100 -> Plus
2L 5554352..5555137 409..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:14 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5553897..5554304 1..408 100 -> Plus
2L 5554352..5555137 409..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:55:14 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5553897..5554304 1..408 100 -> Plus
2L 5554352..5555137 409..1194 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:50:08 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5553897..5554304 1..408 100 -> Plus
arm_2L 5554352..5555137 409..1194 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:28 Download gff for AT21373.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5553897..5554304 1..408 100 -> Plus
2L 5554352..5555137 409..1194 99   Plus

AT21373.hyp Sequence

Translation from 1 to 422

> AT21373.hyp
VTTCFWLTHIYSYINRSIQSFVFLTHDMEDSQRKHAGSKGFRALENRKQD
IAYNHYLNSFVKLEDRRYLPNDNVIHQLVPLRAAVGTIVMTPTQFNEVHF
SPLGTCFYFSENNVPNDPLTMALLEREKLNATKTISCIYS*

AT21373.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14017-PA 238 CG14017-PA 1..111 28..138 574 99.1 Plus

AT21373.pep Sequence

Translation from 81 to 422

> AT21373.pep
MEDSQRKHAGSKGFRALENRKQDIAYNHYLNSFVKLEDRRYLPNDNVIHQ
LVPLRAAVGTIVMTPTQFNEVHFSPLGTCFYFSENNVPNDPLTMALLERE
KLNATKTISCIYS*

AT21373.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15571-PA 282 GF15571-PA 69..155 25..111 293 60.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25082-PA 245 GG25082-PA 1..118 1..111 409 67.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14017-PA 238 CG14017-PA 1..111 1..111 574 99.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26367-PA 223 GL26367-PA 10..96 26..111 222 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12701-PA 223 GA12701-PA 10..96 26..111 222 50.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18557-PA 117 GM18557-PA 1..110 1..110 517 89.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23351-PA 238 GD23351-PA 1..111 1..111 523 89.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25504-PA 229 GE25504-PA 1..102 1..111 431 73.9 Plus