Clone AT21758 Report

Search the DGRC for AT21758

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:217
Well:58
Vector:pOTB7
Associated Gene/TranscriptCG5261-RB
Protein status:AT21758.pep: gold
Preliminary Size:1974
Sequenced Size:1931

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5261 2002-01-01 Sim4 clustering to Release 2
CG5261 2003-01-01 Sim4 clustering to Release 3
CG5261 2008-04-29 Release 5.5 accounting
CG5261 2008-08-15 Release 5.9 accounting
CG5261 2008-12-18 5.12 accounting

Clone Sequence Records

AT21758.complete Sequence

1931 bp (1931 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023873

> AT21758.complete
GGAGAATCTCCTTTCAAAACACTGTGATACCTCTGTCAAACATTTCGTGT
ACGTTTTTTGAAAATAAATTCGCTGACCCGCTAAAAAAAGTGATGGTATG
TTTCGGTATATTGAATACCGCTTGCACATTTTTTGGCGTTCCGTCTGCGT
TCACACTGACCTCCGTAAGGTTATCGGCATAATTTTGTAAATTCTCGACT
TTGCCGTTTTTCGACTCGATTCGTTAGTCAAAATTCCGAAAGACGCGCCG
CCGTTAGATCCACTTCACCAACGCGCGTTGCCACAACAGGACTTGGATTA
GGATTCCCCAGGCAGACCAACGATAAAGGACGAATATGCTGCGCTCCCTT
GCAACAACACGAAACGAACTTGGGGCCCTTCGCTCCGTGCTCCTGCGATC
AAATAACGCCACCTATGTCCGCCGATCGACGGGAAATGTGGTAGTGCGCG
CCCTCAGCAGCCAGCTGATCAACTCCCGGAAACTCCAGAGCATCAGGTCG
AAACTTAACACTAGCCAGTCACCGGTCACATGGAGCTACAACTTCGCCCG
TGCCTATGCCAACCTTCCGGAACACATCAGGGTGCCACTGCCCGCACTTT
CCCCGACTATGGAGCGCGGATCGATTGTCAGCTGGGAGAAGAAGGAGGGC
GATAAGCTCAACGAAGGTGACTTGCTGTGCGAGATTGAGACGGATAAGGC
CACCATGGGCTTTGAGACGCCCGAGGAGGGCTTTCTAGCTAAGATTCTCA
TCCAGGGCGGCACCAAGGACGTTCCCGTTGGCCAGCTGCTGTGCATTATC
GTGCCGGACCAAGGCAGCGTAGCTGCTTTCGCGAACTTCAAGGACGACGG
TGCCGCCGCAGCACCAGCTGCTCCGGCAGCAGCTCCAGCTCCAGCACCGG
CAGCAGCAGCAGCTCCGCCACCACCACCACCACCCGCCGCAGCTCCAGCA
GCCGCTGCGCCTCCACCAGCTCCCGCCGCTGCTCCAGCTGCAGCAGGTAC
GGGCCGTGTATATGCCAGTCCCATGGCCAAGCGACTAGCCGAGGCACAAC
AGCTGCGTCTACAAGGCAAGGGCAGTGGAGTCCATGGCTCAATTAAATCT
GGTGATCTTGCAGGCCAGAAAGCAGCAGCCAAGCCAGCTGCTGCGGCACC
TGCCAAGGCCCCCAGGGCAGCTGGAGCGCGCTACGAGGACATTCCGGTGA
CCAACATGCGCGCAGTGATTGCCAAACGTCTGCTGGAGTCCAAGACACAA
CTGCCTCACTACTACGTCACCGTGCAATGCCAAGTGGATAAGCTGCTGAA
GTTCCGCGCGAAGGTGAACAAGAAGTACGAGAAGCAGGGTGCCCGCGTCT
CTGTAAACGACTTCATTATCAAGGCCGTGGCCATTGCCAGTCTTAAGGTT
CCCGAAGCGAACTCTGCCTGGATGGACACAGTAATTCGCAAGTACGACGA
CGTCGATGTTTCGGTTGCTGTCTCCACAGACAAGGGTCTGATTACCCCGA
TTGTTTTCAATGCCGACCGCAAGGGTGTCCTGGAGATCTCTAAGGATGTC
AAGGCGCTGGCAGCCAAGGCGCGCGACAACAAACTTCAGCCCCACGAATT
CCAGGGTGGCACCATCTCGGTTTCTAATCTGGGCATGTTCGGTGTGAACC
AGTTTGCCGCTGTCATCAACCCTCCTCAATCGTGCATCCTTGCCATTGGC
ACCACAACGAAACAGTTGGTTGCTGATCCCGACAGTCTCAAGGGCTTCAA
GGAGGTCAACATGCTGACGGTCACCCTGAGTGCTGATCATCGTGTTGTGG
ATGGTGCTGTTGCTGCCAGGTGGCTGCAGCACTTCCGCGACTACATGGAG
GATCCTTCCAATATGGTATTGTAAGCGGACAGAAACGACCCATCACATTT
AGAGACTCCAACGAAAAAAAAAAAAAAAAAA

AT21758.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5261-RB 2380 CG5261-RB 1..1925 1..1925 9505 99.5 Plus
CG5261-RA 1955 CG5261-RA 121..1549 497..1925 7100 99.7 Plus
CG5261.a 1842 CG5261.a 617..1432 1110..1925 4050 99.7 Plus
CG5261.a 1842 CG5261.a 121..621 497..997 2490 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7425884..7426381 1..498 2445 99.4 Plus
chr2L 23010047 chr2L 7427297..7427698 665..1066 1995 99.8 Plus
chr2L 23010047 chr2L 7428183..7428535 1291..1643 1765 100 Plus
chr2L 23010047 chr2L 7427894..7428122 1064..1292 1145 100 Plus
chr2L 23010047 chr2L 7427062..7427236 494..668 875 100 Plus
chr2L 23010047 chr2L 7428760..7428929 1744..1913 850 100 Plus
chr2L 23010047 chr2L 7428599..7428702 1641..1744 520 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7426866..7427363 1..498 2415 99 Plus
2L 23513712 2L 7428279..7428680 665..1066 1995 99.8 Plus
2L 23513712 2L 7429165..7429517 1291..1643 1750 99.7 Plus
2L 23513712 2L 7428876..7429104 1064..1292 1145 100 Plus
2L 23513712 2L 7429742..7429923 1744..1925 895 99.5 Plus
2L 23513712 2L 7428044..7428218 494..668 875 100 Plus
2L 23513712 2L 7429581..7429684 1641..1744 520 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7426866..7427363 1..498 2415 98.9 Plus
2L 23513712 2L 7428279..7428680 665..1066 1995 99.7 Plus
2L 23513712 2L 7429165..7429517 1291..1643 1750 99.7 Plus
2L 23513712 2L 7428876..7429104 1064..1292 1145 100 Plus
2L 23513712 2L 7429742..7429923 1744..1925 895 99.4 Plus
2L 23513712 2L 7428044..7428218 494..668 875 100 Plus
2L 23513712 2L 7429581..7429684 1641..1744 520 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:04:01 has no hits.

AT21758.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:04:42 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7425884..7426379 1..496 99 -> Plus
chr2L 7427065..7427234 497..666 100 -> Plus
chr2L 7427299..7427483 667..851 99 == Plus
chr2L 7427629..7427697 997..1065 100 -> Plus
chr2L 7427896..7428122 1066..1292 100 -> Plus
chr2L 7428185..7428533 1293..1641 100 -> Plus
chr2L 7428600..7428702 1642..1744 100 -> Plus
chr2L 7428761..7428929 1745..1913 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:16:56 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1539 336..1874 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:15 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1539 336..1874 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:58 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1539 336..1874 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:57 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1539 336..1874 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:32 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1539 336..1874 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:31:28 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1913 1..1913 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:15 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1913 1..1913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:58 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1913 1..1913 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:58 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1913 1..1913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:32 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
CG5261-RB 1..1913 1..1913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:42 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7426866..7427361 1..496 98 -> Plus
2L 7428047..7428216 497..666 100 -> Plus
2L 7428281..7428679 667..1065 99 -> Plus
2L 7428878..7429104 1066..1292 100 -> Plus
2L 7429167..7429515 1293..1641 99 -> Plus
2L 7429582..7429684 1642..1744 100 -> Plus
2L 7429743..7429911 1745..1913 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:42 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7426866..7427361 1..496 98 -> Plus
2L 7428047..7428216 497..666 100 -> Plus
2L 7428281..7428679 667..1065 99 -> Plus
2L 7428878..7429104 1066..1292 100 -> Plus
2L 7429167..7429515 1293..1641 99 -> Plus
2L 7429582..7429684 1642..1744 100 -> Plus
2L 7429743..7429911 1745..1913 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:04:42 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7426866..7427361 1..496 98 -> Plus
2L 7428047..7428216 497..666 100 -> Plus
2L 7428281..7428679 667..1065 99 -> Plus
2L 7428878..7429104 1066..1292 100 -> Plus
2L 7429167..7429515 1293..1641 99 -> Plus
2L 7429582..7429684 1642..1744 100 -> Plus
2L 7429743..7429911 1745..1913 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:58 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7426866..7427361 1..496 98 -> Plus
arm_2L 7428047..7428216 497..666 100 -> Plus
arm_2L 7428281..7428679 667..1065 99 -> Plus
arm_2L 7428878..7429104 1066..1292 100 -> Plus
arm_2L 7429167..7429515 1293..1641 99 -> Plus
arm_2L 7429582..7429684 1642..1744 100 -> Plus
arm_2L 7429743..7429911 1745..1913 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:31 Download gff for AT21758.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7426866..7427361 1..496 98 -> Plus
2L 7428047..7428216 497..666 100 -> Plus
2L 7428281..7428679 667..1065 99 -> Plus
2L 7428878..7429104 1066..1292 100 -> Plus
2L 7429167..7429515 1293..1641 99 -> Plus
2L 7429582..7429684 1642..1744 100 -> Plus
2L 7429743..7429911 1745..1913 100   Plus

AT21758.pep Sequence

Translation from 335 to 1873

> AT21758.pep
MLRSLATTRNELGALRSVLLRSNNATYVRRSTGNVVVRALSSQLINSRKL
QSIRSKLNTSQSPVTWSYNFARAYANLPEHIRVPLPALSPTMERGSIVSW
EKKEGDKLNEGDLLCEIETDKATMGFETPEEGFLAKILIQGGTKDVPVGQ
LLCIIVPDQGSVAAFANFKDDGAAAAPAAPAAAPAPAPAAAAAPPPPPPP
AAAPAAAAPPPAPAAAPAAAGTGRVYASPMAKRLAEAQQLRLQGKGSGVH
GSIKSGDLAGQKAAAKPAAAAPAKAPRAAGARYEDIPVTNMRAVIAKRLL
ESKTQLPHYYVTVQCQVDKLLKFRAKVNKKYEKQGARVSVNDFIIKAVAI
ASLKVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLE
ISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSC
ILAIGTTTKQLVADPDSLKGFKEVNMLTVTLSADHRVVDGAVAARWLQHF
RDYMEDPSNMVL*

AT21758.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15860-PA 513 GF15860-PA 1..513 1..512 1991 81.9 Plus
Dana\GF16855-PA 469 GF16855-PA 227..466 272..511 243 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10480-PA 494 GG10480-PA 1..494 1..512 2181 92.6 Plus
Dere\GG17863-PA 461 GG17863-PA 34..460 75..512 305 24.5 Plus
Dere\GG18067-PA 469 GG18067-PA 214..466 263..511 256 30.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13735-PA 504 GH13735-PA 1..504 1..512 1784 73.2 Plus
Dgri\GH24642-PA 460 GH24642-PA 157..459 227..512 275 29.3 Plus
Dgri\GH18804-PA 400 GH18804-PA 160..396 273..510 257 27.8 Plus
Dgri\GH18803-PA 481 GH18803-PA 233..478 271..511 247 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
muc-PF 512 CG5261-PF 1..512 1..512 2583 100 Plus
muc-PB 512 CG5261-PB 1..512 1..512 2583 100 Plus
muc-PE 496 CG5261-PE 1..496 1..512 2474 96.9 Plus
muc-PD 489 CG5261-PD 1..489 1..512 2437 95.5 Plus
muc-PC 473 CG5261-PC 1..473 1..512 2339 92.4 Plus
muc-PA 421 CG5261-PA 1..421 92..512 2136 100 Plus
CG5214-PA 468 CG5214-PA 79..465 83..511 416 31.1 Plus
CG5599-PA 462 CG5599-PA 33..461 75..512 354 25.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23773-PA 514 GI23773-PA 1..514 1..512 1765 70.7 Plus
Dmoj\GI21689-PA 460 GI21689-PA 162..459 227..512 297 28.7 Plus
Dmoj\GI22695-PA 370 GI22695-PA 137..366 280..510 263 29.5 Plus
Dmoj\GI22693-PA 482 GI22693-PA 249..479 280..511 242 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25816-PA 493 GL25816-PA 1..493 1..512 1827 76.7 Plus
Dper\GL11994-PA 145 GL11994-PA 5..142 371..511 218 34.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18768-PA 515 GA18768-PA 1..515 1..512 1929 80.3 Plus
Dpse\GA18998-PA 462 GA18998-PA 54..461 96..512 305 25.1 Plus
Dpse\GA26154-PA 479 GA26154-PA 237..476 272..511 242 30.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16455-PA 494 GM16455-PA 1..494 1..512 2521 95.3 Plus
Dsec\GM12058-PA 440 GM12058-PA 30..439 96..512 289 26.2 Plus
Dsec\GM23935-PA 451 GM23935-PA 203..448 271..511 245 29.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23472-PA 496 GD23472-PA 1..496 1..512 2527 95.3 Plus
Dsim\GD17193-PA 460 GD17193-PA 33..459 75..512 326 25.4 Plus
Dsim\GD18745-PA 468 GD18745-PA 220..465 271..511 246 29.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20958-PA 513 GJ20958-PA 1..513 1..512 1823 75.2 Plus
Dvir\GJ15870-PA 466 GJ15870-PA 163..465 227..512 289 28.7 Plus
Dvir\GJ23421-PA 481 GJ23421-PA 233..478 271..511 247 29.8 Plus
Dvir\GJ23422-PA 474 GJ23422-PA 84..470 83..510 213 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24306-PA 507 GK24306-PA 1..507 1..512 1952 79.1 Plus
Dwil\GK16188-PA 463 GK16188-PA 152..462 214..512 289 27.8 Plus
Dwil\GK11289-PA 475 GK11289-PA 225..472 269..511 244 29.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14551-PA 510 GE14551-PA 1..510 1..512 2579 96.7 Plus
Dyak\GE17165-PA 461 GE17165-PA 33..460 75..512 285 26 Plus
Dyak\GE26088-PA 469 GE26088-PA 214..466 263..511 257 30.2 Plus

AT21758.hyp Sequence

Translation from 335 to 1873

> AT21758.hyp
MLRSLATTRNELGALRSVLLRSNNATYVRRSTGNVVVRALSSQLINSRKL
QSIRSKLNTSQSPVTWSYNFARAYANLPEHIRVPLPALSPTMERGSIVSW
EKKEGDKLNEGDLLCEIETDKATMGFETPEEGFLAKILIQGGTKDVPVGQ
LLCIIVPDQGSVAAFANFKDDGAAAAPAAPAAAPAPAPAAAAAPPPPPPP
AAAPAAAAPPPAPAAAPAAAGTGRVYASPMAKRLAEAQQLRLQGKGSGVH
GSIKSGDLAGQKAAAKPAAAAPAKAPRAAGARYEDIPVTNMRAVIAKRLL
ESKTQLPHYYVTVQCQVDKLLKFRAKVNKKYEKQGARVSVNDFIIKAVAI
ASLKVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGVLE
ISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSC
ILAIGTTTKQLVADPDSLKGFKEVNMLTVTLSADHRVVDGAVAARWLQHF
RDYMEDPSNMVL*

AT21758.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5261-PF 512 CG5261-PF 1..512 1..512 2583 100 Plus
CG5261-PB 512 CG5261-PB 1..512 1..512 2583 100 Plus
CG5261-PE 496 CG5261-PE 1..496 1..512 2474 96.9 Plus
CG5261-PD 489 CG5261-PD 1..489 1..512 2437 95.5 Plus
CG5261-PC 473 CG5261-PC 1..473 1..512 2339 92.4 Plus