Clone AT21853 Report

Search the DGRC for AT21853

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:218
Well:53
Vector:pOTB7
Associated Gene/TranscriptCG8398-RC
Protein status:AT21853.pep: gold
Preliminary Size:1753
Sequenced Size:1974

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8398 2002-01-01 Sim4 clustering to Release 2
CG8398 2002-01-09 Blastp of sequenced clone
CG8398 2003-01-01 Sim4 clustering to Release 3
CG8398 2008-04-29 Release 5.5 accounting
CG8398 2008-08-15 Release 5.9 accounting
CG8398 2008-12-18 5.12 accounting

Clone Sequence Records

AT21853.complete Sequence

1974 bp (1974 high quality bases) assembled on 2002-01-09

GenBank Submission: AY075255.1

> AT21853.complete
GTTTTGCCATCAACTGGCAGGTATTTTCAAATATTATAACGTATTTAAGT
TCGACTTATGCCTTTCCGGGCCGAACACAATTGAAACTGAAGATTTAAAA
GCCCTGGTCAGGATCACTAACTCATATGGTGGCCATATTTTGGACATGGA
CCAGTATGGTGGCAACGCCAGCCCGGGAAATTTGTTCTCCAGCTCCATCA
CTGCCTTTCACGACAAGGACAGCCTAGAGCCACGTCCTGGTAACAAATAC
AAACCGCGTCGCTTCAGCGCCCATCTGGAGGAGCATCTGGTCAAGGAAAA
GCGTATCACCAAATTCCCTCTGGTGGGCGCCCTGGTCCACAAGGCACTGC
GGCGTCGGGAGGAGGCAGAGGACGAGAAGGTGCAGATCACAGGTCCGGAG
GACAACCAACACCAACAAAACAACAACAACAACGATTGGGAGCCGAACAG
GATGGTGCTACCGTTTGGACTTGGACCCGATGGCCATCACGTGGATGCCA
TTCAGAGTGCTCCGGCGCCCAGTGCGCCCCCCGCCCACATGATGCCACCA
GCCTACGCCCGGGGACAAACAAACATATACACAGGTGTTCCGATCATCGT
GAATCCCTACATAGACTTCATCGTGGTCAACGGGGATGATCGATACATGA
TCAGATGCGAACGAAAGTCGGTACTCGAGCGGAGCGTGGAGCTGGCCAAG
CTTATCCACGCCGGTCCGAACAGCGGTCGCAAGAGCGACAATCATTTCCA
GATACTCAACGTGGACAAGAACGACTTCGAGCTGATCGTCCGCTACATGG
AGAAGCACTTCATTCCCTACCGCGATCACAAGCACCTGCTCAAGATACTG
GAGCTATCCGATCGCTTCAACGTTCCAGATCTGATAATCTACTGCATTCG
CGAACTTGATCTCAGAATCTCGAGCGCCACGGCACTGGACATCTTCAAGG
CGCTGTGGTTCTACCAGGGCATCGCACTGACCAACCAGCACCAAACGGTG
ATCACCACCCAGGAGACGGGCCAGCAGCTGGCCAGGAAGAAGGCGACCAA
GGCGAAGGCGGCGGCCAAGCAGCTGGCGGCTGCCAAGGCCTCTCAGTCCA
CCGAAAACGGAGCGGAGGGCGATGGAGCCCAGCAGAACCTCATTCCTAAC
CCAAATCCCTTTACCACCGAAGATTACGGCGTGGCGCTGCTGCACAACAC
GCTCCAGCTGATCGATATGCACGCAGAGCTGCAGCTTTCGATGCCGGAGA
TCAGTGATCTCAGGTTCGAGGAGCTGGAGACGCTGGTCAAGAGGGATACC
TTGCAGCTCAGGTCGGAGGTCACTCTGTTCGAGTGCCTGGCCACGTGGAG
TCTGGCGGAGTGCGCCCGCAAGCATATCGATGCCACGCCGGAGAACCGTC
GCACTGTCCTCGGTCCACTATGCCTCACACCTCGTTACTTGCGGATGACC
GCCAGCGAATTCCGGCGATGCTGCGAACGCCTGGAGCTACTGCCACCCAC
TGAGATATCTCTTATCACCGACGCCCTCGATGGCAAAAAGCTAAAGAACC
TCACCGATCAGCAGGCGGAGCTGCTGGAGAAGTTCCGCCAGCCGCGTGCC
GAATACGCCCGGATGCCCGTCCACCTGAGCGACCGGAGCAGTCCGAAGAA
CTATCCCAAGAAGATGCGGCTGGCCCACGAGGGTCGGCCCACGGAGGATG
GATGCTGGGAGAAGGTGGGAATGAACTGTCTCCGCATCTTCGTCTGCATA
TTTGACTGATCCGAGCAGTCCGATGGGGAGGAGGAGGAGGAGGAGGAGGA
CGGCGATGAGGAGGAGGAAGATGATGGATCCGATGAGGAAAATGGAAATG
GAAATAGAGGGGGCAGAAATCGACCCAGAGACAACGGAGGATGAGATGAT
GATCCCACATAGACTTGTTGCATTAAACGAATATTAGCGCTTATGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

AT21853.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8398.i 2911 CG8398.i 13..1959 1..1947 9600 99.5 Plus
CG8398-RA 2089 CG8398-RA 13..1959 1..1947 9600 99.5 Plus
CG8398.h 2366 CG8398.h 13..1959 1..1947 9600 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6608332..6609041 184..887 3365 98.6 Plus
chr3L 24539361 chr3L 6609107..6609754 883..1530 3195 99.5 Plus
chr3L 24539361 chr3L 6610214..6610627 1532..1945 1995 98.8 Plus
chr3L 24539361 chr3L 6601734..6601917 1..184 890 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6615897..6616600 184..887 3475 99.6 Plus
3L 28110227 3L 6616666..6617316 883..1533 3240 99.8 Plus
3L 28110227 3L 6617767..6618182 1532..1947 2020 99 Plus
3L 28110227 3L 6609325..6609508 1..184 890 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6608997..6609700 184..887 3475 99.5 Plus
3L 28103327 3L 6609766..6610416 883..1533 3240 99.8 Plus
3L 28103327 3L 6610867..6611282 1532..1947 2020 99 Plus
3L 28103327 3L 6602425..6602608 1..184 890 98.9 Plus
Blast to na_te.dros performed on 2019-03-16 12:02:22 has no hits.

AT21853.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:03:01 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6601734..6601917 1..184 98 -> Plus
chr3L 6608333..6609037 185..883 98 -> Plus
chr3L 6609108..6609756 884..1532 99 -> Plus
chr3L 6610215..6610627 1533..1945 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:17:00 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1614 146..1759 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:53:19 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1614 146..1759 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:00:35 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1614 146..1759 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:45 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1614 146..1759 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:20 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1614 146..1759 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:47 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1945 1..1945 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:53:19 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1945 1..1945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:00:35 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1945 1..1945 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:45 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1945 1..1945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:20 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
CG8398-RA 1..1945 1..1945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:03:01 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609325..6609508 1..184 98 -> Plus
3L 6615898..6616596 185..883 99 -> Plus
3L 6616667..6617315 884..1532 99 -> Plus
3L 6617768..6618180 1533..1945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:03:01 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609325..6609508 1..184 98 -> Plus
3L 6615898..6616596 185..883 99 -> Plus
3L 6616667..6617315 884..1532 99 -> Plus
3L 6617768..6618180 1533..1945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:03:01 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6609325..6609508 1..184 98 -> Plus
3L 6615898..6616596 185..883 99 -> Plus
3L 6616667..6617315 884..1532 99 -> Plus
3L 6617768..6618180 1533..1945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:35 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6602425..6602608 1..184 98 -> Plus
arm_3L 6608998..6609696 185..883 99 -> Plus
arm_3L 6609767..6610415 884..1532 99 -> Plus
arm_3L 6610868..6611280 1533..1945 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:01 Download gff for AT21853.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6608998..6609696 185..883 99 -> Plus
3L 6609767..6610415 884..1532 99 -> Plus
3L 6610868..6611280 1533..1945 99   Plus
3L 6602425..6602608 1..184 98 -> Plus

AT21853.hyp2 Sequence

Translation from 0 to 1758

> AT21853.hyp2
FCHQLAGIFKYYNIFKFDLCLSGPNTIETEDLKALVRITNSYGAHILDMD
QYGGNASPGNLFSSSITAFHDKDSLEPRPGNKYNPRRFSAHLEEHLVKEK
RITKFPLVGALVHKALRRREEAEDEKVQITGPEDNQHQQNNNNNDWEPNR
MVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIV
NPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQ
ILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIR
ELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATK
AKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNT
LQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWS
LAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPT
EISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKN
YPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*

AT21853.hyp2 Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
axed-PA 537 CG8398-PA 1..537 49..585 2827 100 Plus
axed-PE 435 CG8398-PE 1..435 151..585 2277 100 Plus
axed-PD 435 CG8398-PD 1..435 151..585 2277 100 Plus
axed-PC 435 CG8398-PC 1..435 151..585 2277 100 Plus

AT21853.hyp Sequence

Translation from 1 to 1758

> AT21853.hyp
FCHQLAGIFKYYNIFKFDLCLSGPNTIETEDLKALVRITNSYGAHILDMD
QYGGNASPGNLFSSSITAFHDKDSLEPRPGNKYNPRRFSAHLEEHLVKEK
RITKFPLVGALVHKALRRREEAEDEKVQITGPEDNQHQQNNNNNDWEPNR
MVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIV
NPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQ
ILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIR
ELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATK
AKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNT
LQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWS
LAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPT
EISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKN
YPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*

AT21853.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8398-PA 537 CG8398-PA 1..537 49..585 2827 100 Plus
CG8398-PE 435 CG8398-PE 1..435 151..585 2277 100 Plus
CG8398-PD 435 CG8398-PD 1..435 151..585 2277 100 Plus
CG8398-PC 435 CG8398-PC 1..435 151..585 2277 100 Plus

AT21853.pep Sequence

Translation from 451 to 1758

> AT21853.pep
MVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIV
NPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQ
ILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIR
ELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATK
AKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNT
LQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWS
LAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPT
EISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKN
YPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*

AT21853.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23544-PA 586 GF23544-PA 108..522 1..419 1957 92.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15352-PA 568 GG15352-PA 103..523 1..421 2228 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15166-PA 539 GH15166-PA 105..539 1..435 1946 88.5 Plus
Dgri\GH13939-PA 376 GH13939-PA 1..376 59..435 1704 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
axed-PE 435 CG8398-PE 1..435 1..435 2277 100 Plus
axed-PD 435 CG8398-PD 1..435 1..435 2277 100 Plus
axed-PC 435 CG8398-PC 1..435 1..435 2277 100 Plus
axed-PA 537 CG8398-PA 103..537 1..435 2277 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12105-PA 576 GI12105-PA 148..576 1..435 1816 80 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13271-PA 354 GL13271-PA 186..354 267..435 813 87.6 Plus
Dper\GL13271-PA 354 GL13271-PA 112..186 1..75 393 90.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21046-PA 583 GA21046-PA 124..552 1..428 2001 90.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14792-PA 501 GM14792-PA 182..458 145..421 1452 98.9 Plus
Dsec\GM14792-PA 501 GM14792-PA 104..182 1..79 423 93.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13964-PA 567 GD13964-PA 104..524 1..421 2227 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:20:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13379-PA 514 GJ13379-PA 81..514 1..435 1937 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12549-PA 562 GK12549-PA 92..521 1..430 1983 88.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21571-PA 595 GE21571-PA 126..546 1..421 2237 98.3 Plus