Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
AT21853.complete Sequence
1974 bp (1974 high quality bases) assembled on 2002-01-09
GenBank Submission: AY075255.1
> AT21853.complete
GTTTTGCCATCAACTGGCAGGTATTTTCAAATATTATAACGTATTTAAGT
TCGACTTATGCCTTTCCGGGCCGAACACAATTGAAACTGAAGATTTAAAA
GCCCTGGTCAGGATCACTAACTCATATGGTGGCCATATTTTGGACATGGA
CCAGTATGGTGGCAACGCCAGCCCGGGAAATTTGTTCTCCAGCTCCATCA
CTGCCTTTCACGACAAGGACAGCCTAGAGCCACGTCCTGGTAACAAATAC
AAACCGCGTCGCTTCAGCGCCCATCTGGAGGAGCATCTGGTCAAGGAAAA
GCGTATCACCAAATTCCCTCTGGTGGGCGCCCTGGTCCACAAGGCACTGC
GGCGTCGGGAGGAGGCAGAGGACGAGAAGGTGCAGATCACAGGTCCGGAG
GACAACCAACACCAACAAAACAACAACAACAACGATTGGGAGCCGAACAG
GATGGTGCTACCGTTTGGACTTGGACCCGATGGCCATCACGTGGATGCCA
TTCAGAGTGCTCCGGCGCCCAGTGCGCCCCCCGCCCACATGATGCCACCA
GCCTACGCCCGGGGACAAACAAACATATACACAGGTGTTCCGATCATCGT
GAATCCCTACATAGACTTCATCGTGGTCAACGGGGATGATCGATACATGA
TCAGATGCGAACGAAAGTCGGTACTCGAGCGGAGCGTGGAGCTGGCCAAG
CTTATCCACGCCGGTCCGAACAGCGGTCGCAAGAGCGACAATCATTTCCA
GATACTCAACGTGGACAAGAACGACTTCGAGCTGATCGTCCGCTACATGG
AGAAGCACTTCATTCCCTACCGCGATCACAAGCACCTGCTCAAGATACTG
GAGCTATCCGATCGCTTCAACGTTCCAGATCTGATAATCTACTGCATTCG
CGAACTTGATCTCAGAATCTCGAGCGCCACGGCACTGGACATCTTCAAGG
CGCTGTGGTTCTACCAGGGCATCGCACTGACCAACCAGCACCAAACGGTG
ATCACCACCCAGGAGACGGGCCAGCAGCTGGCCAGGAAGAAGGCGACCAA
GGCGAAGGCGGCGGCCAAGCAGCTGGCGGCTGCCAAGGCCTCTCAGTCCA
CCGAAAACGGAGCGGAGGGCGATGGAGCCCAGCAGAACCTCATTCCTAAC
CCAAATCCCTTTACCACCGAAGATTACGGCGTGGCGCTGCTGCACAACAC
GCTCCAGCTGATCGATATGCACGCAGAGCTGCAGCTTTCGATGCCGGAGA
TCAGTGATCTCAGGTTCGAGGAGCTGGAGACGCTGGTCAAGAGGGATACC
TTGCAGCTCAGGTCGGAGGTCACTCTGTTCGAGTGCCTGGCCACGTGGAG
TCTGGCGGAGTGCGCCCGCAAGCATATCGATGCCACGCCGGAGAACCGTC
GCACTGTCCTCGGTCCACTATGCCTCACACCTCGTTACTTGCGGATGACC
GCCAGCGAATTCCGGCGATGCTGCGAACGCCTGGAGCTACTGCCACCCAC
TGAGATATCTCTTATCACCGACGCCCTCGATGGCAAAAAGCTAAAGAACC
TCACCGATCAGCAGGCGGAGCTGCTGGAGAAGTTCCGCCAGCCGCGTGCC
GAATACGCCCGGATGCCCGTCCACCTGAGCGACCGGAGCAGTCCGAAGAA
CTATCCCAAGAAGATGCGGCTGGCCCACGAGGGTCGGCCCACGGAGGATG
GATGCTGGGAGAAGGTGGGAATGAACTGTCTCCGCATCTTCGTCTGCATA
TTTGACTGATCCGAGCAGTCCGATGGGGAGGAGGAGGAGGAGGAGGAGGA
CGGCGATGAGGAGGAGGAAGATGATGGATCCGATGAGGAAAATGGAAATG
GAAATAGAGGGGGCAGAAATCGACCCAGAGACAACGGAGGATGAGATGAT
GATCCCACATAGACTTGTTGCATTAAACGAATATTAGCGCTTATGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
AT21853.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8398.i | 2911 | CG8398.i | 13..1959 | 1..1947 | 9600 | 99.5 | Plus |
CG8398-RA | 2089 | CG8398-RA | 13..1959 | 1..1947 | 9600 | 99.5 | Plus |
CG8398.h | 2366 | CG8398.h | 13..1959 | 1..1947 | 9600 | 99.5 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 6608332..6609041 | 184..887 | 3365 | 98.6 | Plus |
chr3L | 24539361 | chr3L | 6609107..6609754 | 883..1530 | 3195 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 6610214..6610627 | 1532..1945 | 1995 | 98.8 | Plus |
chr3L | 24539361 | chr3L | 6601734..6601917 | 1..184 | 890 | 98.9 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6615897..6616600 | 184..887 | 3475 | 99.6 | Plus |
3L | 28110227 | 3L | 6616666..6617316 | 883..1533 | 3240 | 99.8 | Plus |
3L | 28110227 | 3L | 6617767..6618182 | 1532..1947 | 2020 | 99 | Plus |
3L | 28110227 | 3L | 6609325..6609508 | 1..184 | 890 | 98.9 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 6608997..6609700 | 184..887 | 3475 | 99.5 | Plus |
3L | 28103327 | 3L | 6609766..6610416 | 883..1533 | 3240 | 99.8 | Plus |
3L | 28103327 | 3L | 6610867..6611282 | 1532..1947 | 2020 | 99 | Plus |
3L | 28103327 | 3L | 6602425..6602608 | 1..184 | 890 | 98.9 | Plus |
Blast to na_te.dros performed on 2019-03-16 12:02:22 has no hits.
AT21853.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:03:01 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 6601734..6601917 | 1..184 | 98 | -> | Plus |
chr3L | 6608333..6609037 | 185..883 | 98 | -> | Plus |
chr3L | 6609108..6609756 | 884..1532 | 99 | -> | Plus |
chr3L | 6610215..6610627 | 1533..1945 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:17:00 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1614 | 146..1759 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:53:19 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1614 | 146..1759 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:00:35 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1614 | 146..1759 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:45 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1614 | 146..1759 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:20 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1614 | 146..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:47 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1945 | 1..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:53:19 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1945 | 1..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:00:35 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1945 | 1..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:45 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1945 | 1..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:20 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8398-RA | 1..1945 | 1..1945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:03:01 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6609325..6609508 | 1..184 | 98 | -> | Plus |
3L | 6615898..6616596 | 185..883 | 99 | -> | Plus |
3L | 6616667..6617315 | 884..1532 | 99 | -> | Plus |
3L | 6617768..6618180 | 1533..1945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:03:01 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6609325..6609508 | 1..184 | 98 | -> | Plus |
3L | 6615898..6616596 | 185..883 | 99 | -> | Plus |
3L | 6616667..6617315 | 884..1532 | 99 | -> | Plus |
3L | 6617768..6618180 | 1533..1945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:03:01 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6609325..6609508 | 1..184 | 98 | -> | Plus |
3L | 6615898..6616596 | 185..883 | 99 | -> | Plus |
3L | 6616667..6617315 | 884..1532 | 99 | -> | Plus |
3L | 6617768..6618180 | 1533..1945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:00:35 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6602425..6602608 | 1..184 | 98 | -> | Plus |
arm_3L | 6608998..6609696 | 185..883 | 99 | -> | Plus |
arm_3L | 6609767..6610415 | 884..1532 | 99 | -> | Plus |
arm_3L | 6610868..6611280 | 1533..1945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:53:01 Download gff for
AT21853.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6608998..6609696 | 185..883 | 99 | -> | Plus |
3L | 6609767..6610415 | 884..1532 | 99 | -> | Plus |
3L | 6610868..6611280 | 1533..1945 | 99 | | Plus |
3L | 6602425..6602608 | 1..184 | 98 | -> | Plus |
AT21853.hyp2 Sequence
Translation from 0 to 1758
> AT21853.hyp2
FCHQLAGIFKYYNIFKFDLCLSGPNTIETEDLKALVRITNSYGAHILDMD
QYGGNASPGNLFSSSITAFHDKDSLEPRPGNKYNPRRFSAHLEEHLVKEK
RITKFPLVGALVHKALRRREEAEDEKVQITGPEDNQHQQNNNNNDWEPNR
MVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIV
NPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQ
ILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIR
ELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATK
AKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNT
LQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWS
LAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPT
EISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKN
YPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*
AT21853.hyp2 Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
axed-PA | 537 | CG8398-PA | 1..537 | 49..585 | 2827 | 100 | Plus |
axed-PE | 435 | CG8398-PE | 1..435 | 151..585 | 2277 | 100 | Plus |
axed-PD | 435 | CG8398-PD | 1..435 | 151..585 | 2277 | 100 | Plus |
axed-PC | 435 | CG8398-PC | 1..435 | 151..585 | 2277 | 100 | Plus |
AT21853.hyp Sequence
Translation from 1 to 1758
> AT21853.hyp
FCHQLAGIFKYYNIFKFDLCLSGPNTIETEDLKALVRITNSYGAHILDMD
QYGGNASPGNLFSSSITAFHDKDSLEPRPGNKYNPRRFSAHLEEHLVKEK
RITKFPLVGALVHKALRRREEAEDEKVQITGPEDNQHQQNNNNNDWEPNR
MVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIV
NPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQ
ILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIR
ELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATK
AKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNT
LQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWS
LAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPT
EISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKN
YPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*
AT21853.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8398-PA | 537 | CG8398-PA | 1..537 | 49..585 | 2827 | 100 | Plus |
CG8398-PE | 435 | CG8398-PE | 1..435 | 151..585 | 2277 | 100 | Plus |
CG8398-PD | 435 | CG8398-PD | 1..435 | 151..585 | 2277 | 100 | Plus |
CG8398-PC | 435 | CG8398-PC | 1..435 | 151..585 | 2277 | 100 | Plus |
AT21853.pep Sequence
Translation from 451 to 1758
> AT21853.pep
MVLPFGLGPDGHHVDAIQSAPAPSAPPAHMMPPAYARGQTNIYTGVPIIV
NPYIDFIVVNGDDRYMIRCERKSVLERSVELAKLIHAGPNSGRKSDNHFQ
ILNVDKNDFELIVRYMEKHFIPYRDHKHLLKILELSDRFNVPDLIIYCIR
ELDLRISSATALDIFKALWFYQGIALTNQHQTVITTQETGQQLARKKATK
AKAAAKQLAAAKASQSTENGAEGDGAQQNLIPNPNPFTTEDYGVALLHNT
LQLIDMHAELQLSMPEISDLRFEELETLVKRDTLQLRSEVTLFECLATWS
LAECARKHIDATPENRRTVLGPLCLTPRYLRMTASEFRRCCERLELLPPT
EISLITDALDGKKLKNLTDQQAELLEKFRQPRAEYARMPVHLSDRSSPKN
YPKKMRLAHEGRPTEDGCWEKVGMNCLRIFVCIFD*
AT21853.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 01:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF23544-PA | 586 | GF23544-PA | 108..522 | 1..419 | 1957 | 92.8 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 01:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG15352-PA | 568 | GG15352-PA | 103..523 | 1..421 | 2228 | 98.1 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 01:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH15166-PA | 539 | GH15166-PA | 105..539 | 1..435 | 1946 | 88.5 | Plus |
Dgri\GH13939-PA | 376 | GH13939-PA | 1..376 | 59..435 | 1704 | 87.8 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
axed-PE | 435 | CG8398-PE | 1..435 | 1..435 | 2277 | 100 | Plus |
axed-PD | 435 | CG8398-PD | 1..435 | 1..435 | 2277 | 100 | Plus |
axed-PC | 435 | CG8398-PC | 1..435 | 1..435 | 2277 | 100 | Plus |
axed-PA | 537 | CG8398-PA | 103..537 | 1..435 | 2277 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 01:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI12105-PA | 576 | GI12105-PA | 148..576 | 1..435 | 1816 | 80 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 01:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL13271-PA | 354 | GL13271-PA | 186..354 | 267..435 | 813 | 87.6 | Plus |
Dper\GL13271-PA | 354 | GL13271-PA | 112..186 | 1..75 | 393 | 90.7 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 01:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA21046-PA | 583 | GA21046-PA | 124..552 | 1..428 | 2001 | 90.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 01:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM14792-PA | 501 | GM14792-PA | 182..458 | 145..421 | 1452 | 98.9 | Plus |
Dsec\GM14792-PA | 501 | GM14792-PA | 104..182 | 1..79 | 423 | 93.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 01:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD13964-PA | 567 | GD13964-PA | 104..524 | 1..421 | 2227 | 98.1 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 01:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ13379-PA | 514 | GJ13379-PA | 81..514 | 1..435 | 1937 | 86 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 01:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK12549-PA | 562 | GK12549-PA | 92..521 | 1..430 | 1983 | 88.9 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 01:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE21571-PA | 595 | GE21571-PA | 126..546 | 1..421 | 2237 | 98.3 | Plus |