Clone AT21872 Report

Search the DGRC for AT21872

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:218
Well:72
Vector:pOTB7
Associated Gene/TranscriptCG17717-RA
Protein status:AT21872.pep: gold
Sequenced Size:1087

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17717-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

AT21872.complete Sequence

1087 bp assembled on 2010-12-06

GenBank Submission: BT125808.1

> AT21872.complete
ATGTTGCAGAGAAATTCGGTGTAAAAATTTGTTTTCTCAAAATTTGTTTT
GTAACGCTCACAAGTGGACAAACGCCACCAACCGCCGCCAAGCAGTTGTC
AATATCATTGCAAGCAGTGCAGGCGCACCACACAATAGCCGTTGCTTACC
CGCAACAACATCTGTGTACCCGAGCAATATGTCGCATCATCAACACGTTC
TTTCCGAGGCCGCTGCCCTTCGTCTGATTAACGGTCTGGAGTCAGCCGGC
AATGCCACAATGCCACTCGGCGCTCAGCCGCCTCAGTCAGCGGCAGCTGA
AGCAATCTGCTCGTCGCAAATCGTAGCATCGGCACATGGCACGCCCACTG
CATCCACGGCAGCACTGGAAATATCCTCAGCACGACAACGGATGCTGCGA
AGTCACCTACAGGAGAGCCTCCATTCGGCGAACGAAAGCGGCAACTCGTG
CCGCATCTGCCGCTGGAACCGCAACGACATGGAGATCATCAAATGTCCCT
GCAACTGCAAGGGCAGCGTGGGCTACATCCACCTAAAGTGCTTGAAGCGC
TGGATCATGCACAGGCGGGATAATCGCTGTGAGATCTGCAATGCGGTCTT
TAATATCGCGGAGGAGCGGGCCAGTCTGAAGCAAATGATCCGAACCTTCT
GCTGCGGCCGTTGTTGCGGCCTGATTGTGAAGCATCTGCTATTTAGCGCC
TCGCTAATGCCACTAGCCCATATCATCTTGCAGCAGGTGCTGCAGTGCAT
GGATAATATGAATCAAGGCAGCACCGATCAGTTAACCGTCCAGGAGGTGT
TTGTCGCCTCTTGTGCCCTTCTGACCTCCAGTGCACTTTTCTTCCACTTC
TTTGAGTTTGTCACCACACGATTTATGCTCATCCGGAACATTCTCAGCCA
CTGGTGGATGTTTGGCAGCACCTCCGATTTTGAGCTGGTGGAGATTGAGG
ATGATTCCATCGATTTTTTCGATGATTAGCCGATAATATGGACTGATATA
AAAATGATGATAATGGAAGGCAGAGCAGCATTCATGTTTACAGTTAAATA
AATTATTTTATTATTTCATAAAAAAAAAAAAAAAAAA

AT21872.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6481598..6482118 1..521 2605 100 Plus
chrX 22417052 chrX 6482595..6482930 734..1069 1665 99.7 Plus
chrX 22417052 chrX 6482316..6482535 520..739 1100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6589313..6589833 1..521 2575 99.6 Plus
X 23542271 X 6590311..6590647 734..1070 1685 100 Plus
X 23542271 X 6590032..6590251 520..739 1100 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6597411..6597931 1..521 2575 99.6 Plus
X 23527363 X 6598409..6598745 734..1070 1685 100 Plus
X 23527363 X 6598130..6598349 520..739 1100 100 Plus
Blast to na_te.dros performed on 2019-03-17 01:13:56 has no hits.

AT21872.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:14:47 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6481598..6482117 1..520 100 -> Plus
chrX 6482317..6482532 521..736 100 -> Plus
chrX 6482598..6482930 737..1069 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2010-12-06 14:16:07 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 1..801 179..979 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:33:11 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 1..801 179..979 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:52:41 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 1..801 179..979 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 14:16:07 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 24..1092 1..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:33:11 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 24..1092 1..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:52:41 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
CG17717-RA 24..1092 1..1069 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:47 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589313..6589832 1..520 99 -> Plus
X 6590033..6590248 521..736 100 -> Plus
X 6590314..6590646 737..1069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:47 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589313..6589832 1..520 99 -> Plus
X 6590033..6590248 521..736 100 -> Plus
X 6590314..6590646 737..1069 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:47 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
X 6589313..6589832 1..520 99 -> Plus
X 6590033..6590248 521..736 100 -> Plus
X 6590314..6590646 737..1069 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:33:11 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6483346..6483865 1..520 99 -> Plus
arm_X 6484066..6484281 521..736 100 -> Plus
arm_X 6484347..6484679 737..1069 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:52:00 Download gff for AT21872.complete
Subject Subject Range Query Range Percent Splice Strand
X 6597411..6597930 1..520 99 -> Plus
X 6598131..6598346 521..736 100 -> Plus
X 6598412..6598744 737..1069 100   Plus

AT21872.hyp Sequence

Translation from 1 to 978

> AT21872.hyp
CCREIRCKNLFSQNLFCNAHKWTNATNRRQAVVNIIASSAGAPHNSRCLP
ATTSVYPSNMSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAE
AICSSQIVASAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSC
RICRWNRNDMEIIKCPCNCKGSVGYIHLKCLKRWIMHRRDNRCEICNAVF
NIAEERASLKQMIRTFCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCM
DNMNQGSTDQLTVQEVFVASCALLTSSALFFHFFEFVTTRFMLIRNILSH
WWMFGSTSDFELVEIEDDSIDFFDD*

AT21872.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PA 266 CG17717-PA 1..266 60..325 1404 100 Plus
CG17717-PB 260 CG17717-PB 1..260 60..325 1353 97.7 Plus

AT21872.pep Sequence

Translation from 1 to 978

> AT21872.pep
CCREIRCKNLFSQNLFCNAHKWTNATNRRQAVVNIIASSAGAPHNSRCLP
ATTSVYPSNMSHHQHVLSEAAALRLINGLESAGNATMPLGAQPPQSAAAE
AICSSQIVASAHGTPTASTAALEISSARQRMLRSHLQESLHSANESGNSC
RICRWNRNDMEIIKCPCNCKGSVGYIHLKCLKRWIMHRRDNRCEICNAVF
NIAEERASLKQMIRTFCCGRCCGLIVKHLLFSASLMPLAHIILQQVLQCM
DNMNQGSTDQLTVQEVFVASCALLTSSALFFHFFEFVTTRFMLIRNILSH
WWMFGSTSDFELVEIEDDSIDFFDD*

AT21872.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22266-PA 292 GF22266-PA 1..292 60..323 1060 71.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19596-PA 277 GG19596-PA 1..277 60..325 1177 81.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12688-PA 245 GH12688-PA 6..245 64..323 824 61.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17717-PA 266 CG17717-PA 1..266 60..325 1404 100 Plus
CG17717-PB 260 CG17717-PB 1..260 60..325 1353 97.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16362-PA 302 GI16362-PA 116..302 137..323 906 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14305-PA 277 GL14305-PA 1..252 60..310 869 66.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14623-PA 265 GA14623-PA 1..265 60..323 907 65.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12500-PA 273 GM12500-PA 1..273 60..325 1307 92.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16805-PA 273 GD16805-PA 1..273 60..325 1300 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16731-PA 158 GJ16731-PA 10..158 172..320 696 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20143-PA 264 GK20143-PA 1..264 60..323 898 68.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16756-PA 273 GE16756-PA 1..273 60..325 1156 84.3 Plus