Clone AT21877 Report

Search the DGRC for AT21877

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:218
Well:77
Vector:pOTB7
Associated Gene/TranscriptCG43341-RA
Protein status:AT21877.pep: gold
Sequenced Size:907

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30492 2008-04-29 Release 5.5 accounting

Clone Sequence Records

AT21877.complete Sequence

907 bp assembled on 2007-01-10

GenBank Submission: BT030104

> AT21877.complete
CCGATCCCGACACCTGGAGAACAGCCCCCCACACCACACCACGCGGCAGA
GAATCCACTACAGATCCAGCTGTCGATCGAGTTCCAGGGAGAATGCTCTT
CTCCGCGGTGGTGTTGTGCCAGGTGGAGCGGCTGATGTGCCTGCCCATCA
GCTTCGCGGTGCTGGGCTTCCTCTTCATGGCCTGCACCATGGAAGTGGTG
CTGCTCAAGTTGACCAGCACTGATCCGGTGCTCGGACCGCCCGCCGAGGA
TTGGGAGGAGAACGGGGGCCCGGATGGGGAGGAGCAGATCTACTATGAGA
ATCTGGAGAACAACTATGAGTACTGGGCGCGCAGGAGGATGCGATTCCAT
CGACAGCGACAGCAGCAACAGCACCAACAGCAGCAGCAGCATCTGCCCAC
ATAGAAGACTTAGGCTAGAATATAAGTGTATATTTTTAATTAGATCGGTT
TTAAGCGGCTATACTGACTGAGCATCTCTCCTACATACCTTGTGTTTTCA
ATCGCTTTCGACAGCCTGTGCAAGTTATTTGAATCTTTCGCAAGCGTAAT
GTTTTCGATGACCGTATACGGTTGGCTTTTTCCTTAAATTATATTTGTTT
GTTTGTAAGCGAAATTGCGAATTTTGCCATTTGAATAAGTTGAGCAGCAA
TCCGCTTGGCGATTTCTCATTTCGAGCACGTACAAGACACCCAGGAATTC
CCTTCTTCTCTCTTGTGTAAGAACTGTAAGTGACTGACATAATCCGAATG
CATATCGAGGCAGACAGACGCACTGCCTCTTAGATTGTAAGTTGTTTGTG
ATAGAGCTACATGTATGTATACTTTAAGCCAGGCCATTTCGCCTAAGTTG
ATTAAACTCGGTTCGAAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

AT21877.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30492-RF 3515 CG30492-RF 1..302 93..394 1510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3520335..3521206 1..872 4330 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7633009..7633881 1..873 4335 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7634208..7635080 1..873 4335 99.7 Plus
Blast to na_te.dros performed 2019-03-16 16:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
opus 7521 opus OPUS 7521bp 5846..5891 618..573 113 71.7 Minus

AT21877.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:26:57 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3520335..3521206 1..872 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:17:04 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG30492-RF 1..310 93..404 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:22 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG30492-RF 1..310 93..404 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:50 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG43341-RA 1..312 93..404 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:24:41 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG30492-RF 1..310 93..404 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:27:44 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG43341-RA 1..312 93..404 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:42:52 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG30492-RF 1..310 93..404 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:22 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG30492-RF 1..310 93..404 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:50 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG43341-RA 169..1040 1..872 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:24:41 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG30492-RF 1..310 93..404 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:27:44 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
CG43341-RA 169..1040 1..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:57 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7633009..7633880 1..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:57 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7633009..7633880 1..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:57 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7633009..7633880 1..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:50 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3520514..3521385 1..872 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:16 Download gff for AT21877.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7634208..7635079 1..872 99   Plus

AT21877.pep Sequence

Translation from 2 to 403

> AT21877.pep
DPDTWRTAPHTTPRGRESTTDPAVDRVPGRMLFSAVVLCQVERLMCLPIS
FAVLGFLFMACTMEVVLLKLTSTDPVLGPPAEDWEENGGPDGEEQIYYEN
LENNYEYWARRRMRFHRQRQQQQHQQQQQHLPT*

AT21877.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG43341-PA 103 CG43341-PA 1..103 31..133 556 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10495-PA 102 GD10495-PA 1..101 31..132 437 90.2 Plus

AT21877.hyp Sequence

Translation from 2 to 403

> AT21877.hyp
DPDTWRTAPHTTPHGRESTTDPAVDRVPGRMLFSAVVLCQVERLMCLPIS
FAVLGFLFMACTMEVVLLKLTSTDPVLGPPAEDWEENGGPDGEEQIYYEN
LENNYEYWARRRMRFHRQRQQQQHQQQQQHLPT*

AT21877.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG43341-PA 103 CG43341-PA 1..103 31..133 556 100 Plus