AT21877.complete Sequence
907 bp assembled on 2007-01-10
GenBank Submission: BT030104
> AT21877.complete
CCGATCCCGACACCTGGAGAACAGCCCCCCACACCACACCACGCGGCAGA
GAATCCACTACAGATCCAGCTGTCGATCGAGTTCCAGGGAGAATGCTCTT
CTCCGCGGTGGTGTTGTGCCAGGTGGAGCGGCTGATGTGCCTGCCCATCA
GCTTCGCGGTGCTGGGCTTCCTCTTCATGGCCTGCACCATGGAAGTGGTG
CTGCTCAAGTTGACCAGCACTGATCCGGTGCTCGGACCGCCCGCCGAGGA
TTGGGAGGAGAACGGGGGCCCGGATGGGGAGGAGCAGATCTACTATGAGA
ATCTGGAGAACAACTATGAGTACTGGGCGCGCAGGAGGATGCGATTCCAT
CGACAGCGACAGCAGCAACAGCACCAACAGCAGCAGCAGCATCTGCCCAC
ATAGAAGACTTAGGCTAGAATATAAGTGTATATTTTTAATTAGATCGGTT
TTAAGCGGCTATACTGACTGAGCATCTCTCCTACATACCTTGTGTTTTCA
ATCGCTTTCGACAGCCTGTGCAAGTTATTTGAATCTTTCGCAAGCGTAAT
GTTTTCGATGACCGTATACGGTTGGCTTTTTCCTTAAATTATATTTGTTT
GTTTGTAAGCGAAATTGCGAATTTTGCCATTTGAATAAGTTGAGCAGCAA
TCCGCTTGGCGATTTCTCATTTCGAGCACGTACAAGACACCCAGGAATTC
CCTTCTTCTCTCTTGTGTAAGAACTGTAAGTGACTGACATAATCCGAATG
CATATCGAGGCAGACAGACGCACTGCCTCTTAGATTGTAAGTTGTTTGTG
ATAGAGCTACATGTATGTATACTTTAAGCCAGGCCATTTCGCCTAAGTTG
ATTAAACTCGGTTCGAAGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
AT21877.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 17:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30492-RF | 3515 | CG30492-RF | 1..302 | 93..394 | 1510 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:26:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 3520335..3521206 | 1..872 | 4330 | 99.8 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:55:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7633009..7633881 | 1..873 | 4335 | 99.8 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 7634208..7635080 | 1..873 | 4335 | 99.7 | Plus |
Blast to na_te.dros performed 2019-03-16 16:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 5846..5891 | 618..573 | 113 | 71.7 | Minus |
AT21877.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:26:57 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 3520335..3521206 | 1..872 | 95 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:17:04 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30492-RF | 1..310 | 93..404 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:14:22 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30492-RF | 1..310 | 93..404 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:10:50 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43341-RA | 1..312 | 93..404 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:24:41 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30492-RF | 1..310 | 93..404 | 98 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:27:44 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43341-RA | 1..312 | 93..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:42:52 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30492-RF | 1..310 | 93..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:14:22 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30492-RF | 1..310 | 93..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:10:50 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43341-RA | 169..1040 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:24:41 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30492-RF | 1..310 | 93..404 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:27:44 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43341-RA | 169..1040 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:57 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7633009..7633880 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:57 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7633009..7633880 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:26:57 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7633009..7633880 | 1..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:10:50 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3520514..3521385 | 1..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:45:16 Download gff for
AT21877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7634208..7635079 | 1..872 | 99 | | Plus |
AT21877.pep Sequence
Translation from 2 to 403
> AT21877.pep
DPDTWRTAPHTTPRGRESTTDPAVDRVPGRMLFSAVVLCQVERLMCLPIS
FAVLGFLFMACTMEVVLLKLTSTDPVLGPPAEDWEENGGPDGEEQIYYEN
LENNYEYWARRRMRFHRQRQQQQHQQQQQHLPT*
AT21877.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43341-PA | 103 | CG43341-PA | 1..103 | 31..133 | 556 | 100 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD10495-PA | 102 | GD10495-PA | 1..101 | 31..132 | 437 | 90.2 | Plus |
AT21877.hyp Sequence
Translation from 2 to 403
> AT21877.hyp
DPDTWRTAPHTTPHGRESTTDPAVDRVPGRMLFSAVVLCQVERLMCLPIS
FAVLGFLFMACTMEVVLLKLTSTDPVLGPPAEDWEENGGPDGEEQIYYEN
LENNYEYWARRRMRFHRQRQQQQHQQQQQHLPT*
AT21877.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43341-PA | 103 | CG43341-PA | 1..103 | 31..133 | 556 | 100 | Plus |