Clone AT22194 Report

Search the DGRC for AT22194

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:221
Well:94
Vector:pOTB7
Associated Gene/TranscriptCG5217-RA
Protein status:AT22194.pep: gold
Preliminary Size:755
Sequenced Size:994

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5217 2002-01-01 Sim4 clustering to Release 2
CG5217 2002-01-18 Blastp of sequenced clone
CG5217 2003-01-01 Sim4 clustering to Release 3
CG5217 2008-04-29 Release 5.5 accounting
CG5217 2008-08-15 Release 5.9 accounting
CG5217 2008-12-18 5.12 accounting

Clone Sequence Records

AT22194.complete Sequence

994 bp (994 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089397

> AT22194.complete
GTTCAATTCAACAACACCAGTCACATTAATCTTATATTTCGTACAAAACC
GAGCCATATTTTATTGTAAATAAAATTCGATAAAATTTCGGTGGACATAT
TGGACGAAGATGTCCAGTCTGCAAGATATTCCGCTTGCCGACCCCGAGGG
CCTGTCTGTGGAAGGTCCCGAGGTGGCCCCCGCTCCAAAGTCCAATTCCT
TGAAGCGCTTCTTTAAGATCAGCAAGAAGCCAATGATGCGCGACCAAGTG
GAGGATGACGACGAGACATCCTCCCAGGACAACAAGGACCTGGGAAAGTC
AAACACTATAAGTCGCTTCTTTACCCGGATGAAGGGAGCCAATAAGGATG
TTCAAGATCCTTCGAGCTCGGTGGTCGAACCCGTGGAGCAGGATAAGCCG
TTGCCGAATGCAAAGCCCACGATTAAGACATCCATTTCATCCTACTGGAA
GATACTGTTCAACCGGCAGAAGAGCCAGCGCCAAAACGCAGCTTTAGGGC
AGACCAATGCCAATAAAGAGGATAACGAGTCTGAAGAAGTCCATGAACTG
CAACCAGTAAGCCAAGATCCCGATACCGATCCTCAGCCGACAGTCAAGGA
TGAGCACGATGAAATGGAACGTGGCACAGATCCGGAGCCACCCAACCCGA
AGCCCAACAAAAGTGTTGCCAGCAAGGCATCCGGTCAGGAGATTGTCAGT
GCCTTAGAGGGCGGCCAGCTGTCTACCAATGATCACGAGAATGCGGCTTC
CATTTAGCCGTCTTCAACTAACACTAATCAAACCCGATGTCTAGTATCTC
TACCGATCTCGAGGCAAAGGTTTAGAAATCAGTTAGGGAGCTGATTCAAC
CTTACACAATATATACTCTTCAAACACATCCCTGCTAACTGACATACATA
CAAGAACAAACATTTTCGCTTTGATTCCACAAATGATAATTCCGAGCTCA
CGAAATAAACACATACAAGACCCCAAAAAAAAAAAAAAAAAAAA

AT22194.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-RA 1065 CG5217-RA 55..1029 1..975 4875 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15070997..15071624 974..347 3140 100 Minus
chr3R 27901430 chr3R 15071735..15072081 347..1 1735 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:56:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19247051..19247679 975..347 3145 100 Minus
3R 32079331 3R 19247790..19248136 347..1 1735 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18987882..18988510 975..347 3145 100 Minus
3R 31820162 3R 18988621..18988967 347..1 1735 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:15:16 has no hits.

AT22194.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:15:59 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15070997..15071623 348..974 100 <- Minus
chr3R 15071735..15072081 1..347 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:17:31 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 1..648 110..757 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:46:45 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 1..648 110..757 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:09:26 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 1..648 110..757 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:14:52 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 1..648 110..757 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:17 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 1..648 110..757 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:10:59 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 10..983 1..974 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:46:45 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 10..983 1..974 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:09:26 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 10..983 1..974 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:14:52 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 10..983 1..974 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:17 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
CG5217-RA 1..974 1..974 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:59 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19247052..19247678 348..974 100 <- Minus
3R 19247790..19248136 1..347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:59 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19247052..19247678 348..974 100 <- Minus
3R 19247790..19248136 1..347 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:15:59 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19247052..19247678 348..974 100 <- Minus
3R 19247790..19248136 1..347 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:09:26 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15072774..15073400 348..974 100 <- Minus
arm_3R 15073512..15073858 1..347 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:36 Download gff for AT22194.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18987883..18988509 348..974 100 <- Minus
3R 18988621..18988967 1..347 100   Minus

AT22194.pep Sequence

Translation from 109 to 756

> AT22194.pep
MSSLQDIPLADPEGLSVEGPEVAPAPKSNSLKRFFKISKKPMMRDQVEDD
DETSSQDNKDLGKSNTISRFFTRMKGANKDVQDPSSSVVEPVEQDKPLPN
AKPTIKTSISSYWKILFNRQKSQRQNAALGQTNANKEDNESEEVHELQPV
SQDPDTDPQPTVKDEHDEMERGTDPEPPNPKPNKSVASKASGQEIVSALE
GGQLSTNDHENAASI*

AT22194.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18468-PA 217 GF18468-PA 1..200 1..208 408 50 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16074-PA 215 GG16074-PA 1..212 1..213 786 75.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22394-PA 207 GH22394-PA 1..131 1..122 244 45.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-PA 215 CG5217-PA 1..215 1..215 1110 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24480-PA 218 GI24480-PA 1..139 1..130 267 48.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11972-PA 199 GL11972-PA 1..191 1..187 323 43.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18744-PA 199 GA18744-PA 1..191 1..187 323 43.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11751-PA 214 GM11751-PA 1..214 1..215 992 90.7 Plus
Dsec\GM26918-PA 2968 GM26918-PA 1..82 1..82 405 92.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20122-PA 216 GD20122-PA 1..216 1..215 995 89.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24545-PA 219 GJ24545-PA 1..138 1..131 267 51.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13481-PA 237 GK13481-PA 1..190 1..152 268 40.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25141-PA 215 GE25141-PA 1..215 1..215 875 78.1 Plus

AT22194.hyp Sequence

Translation from 109 to 756

> AT22194.hyp
MSSLQDIPLADPEGLSVEGPEVAPAPKSNSLKRFFKISKKPMMRDQVEDD
DETSSQDNKDLGKSNTISRFFTRMKGANKDVQDPSSSVVEPVEQDKPLPN
AKPTIKTSISSYWKILFNRQKSQRQNAALGQTNANKEDNESEEVHELQPV
SQDPDTDPQPTVKDEHDEMERGTDPEPPNPKPNKSVASKASGQEIVSALE
GGQLSTNDHENAASI*

AT22194.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5217-PA 215 CG5217-PA 1..215 1..215 1110 100 Plus