Clone AT23224 Report

Search the DGRC for AT23224

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:232
Well:24
Vector:pOTB7
Associated Gene/TranscriptCG9582-RA
Protein status:AT23224.pep: gold
Preliminary Size:903
Sequenced Size:987

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9582 2002-01-01 Sim4 clustering to Release 2
CG9582 2002-01-03 Blastp of sequenced clone
CG9582 2003-01-01 Sim4 clustering to Release 3
CG9582 2008-04-29 Release 5.5 accounting
CG9582 2008-08-15 Release 5.9 accounting
CG9582 2008-12-18 5.12 accounting

Clone Sequence Records

AT23224.complete Sequence

987 bp (987 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075266

> AT23224.complete
CATGTGTTTAGATGAAATTCGAAATTTTTTGACGTTGGATGGCGACCCGT
TCTGAAGAGACGGTCCGTTCACTGGCGCATTGGCAATTTTTGGCTGGCGG
ATTGTCGGGCTTCATCGAGATTATCTGCTTTCATCCCCTCGATGTGGTTA
AGACCCGGATGCAGATACAGGGTGCCCATCCATTTGGCGGCGAGGTTGTT
TACACCTGTCCTCTGGATGCCATCGTCAAAATATATCGCTACGAAGGGTT
GTCTTCCCTATGGAAGGGTATTGTGCCCCCGATCTGCGTGGAAACTCCAA
AGAGGGGCGGCAAGTTTTTGATGTACGAGAGCCTTAAACCGTACTTCCAG
TTTGGAGCCCCTCAACCAACTCCGCTGACCCACGCCATGTCCGGTTCAAT
GGCCGCAATTCTGGAGTCCTTTCTCGTCAATCCCTTTGAGGTGGTCAAGA
TCACTCAGCAGGCTCATCGGGGGAAACGCTTGAAAACACTGTCGGTCGTA
AAGTACATAATCAAGCATGATGGCTATGGCATCAAAGGGTTGTATCGGGG
TATCACTGCACTAGTGGCTCGAAATGCCGTCTTTCACTTTGGATTCTTTG
GTTTTTACAATGCGCTTAAAGACATTGTTCCAAGCCCGGAGGATAAGACA
TACAACATCCTGCGAAAGGTCATCATAGCTGGGTTGGCCAGTTCCCTGGC
TTGCGTGATGAGTGTTACTTTGGATATGGCCAAGTGCAGGATTCAAGGAC
CCCAGCCAGTGAAGGGCGAGGTGAAGTACCAGTGGACCATAAGCACGATT
AAATCAACCTTCAAGGAGGAGGGTTTTCGATCGTTGTTCAAGGGTCTGGG
GGCGATGATCCTGCGTGTCGGCCCTGGTGGGGCCATGCTCCTGGTGACCT
ACGAGTATTTATTTGAATTCCTTAAGAGCCAAAATATTTAATATTTTTTT
ATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT23224.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-RA 955 CG9582-RA 1..955 1..955 4760 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9023358..9024312 955..1 4775 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:57:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024446..9025404 959..1 4765 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9024446..9025404 959..1 4765 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 15:51:39 has no hits.

AT23224.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:52:30 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9023384..9024312 1..929 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:18:53 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 39..941 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:15 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 39..941 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:56:22 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 39..941 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:02 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 39..941 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:52 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..903 39..941 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:21:47 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..955 1..955 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:15 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..955 1..955 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:56:22 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 29..983 1..955 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:02 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 1..955 1..955 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:52 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
CG9582-RA 29..983 1..955 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:30 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9024450..9025404 1..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:30 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9024450..9025404 1..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:52:30 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9024450..9025404 1..955 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:56:22 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9024450..9025404 1..955 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:55 Download gff for AT23224.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9024450..9025404 1..955 99   Minus

AT23224.pep Sequence

Translation from 38 to 940

> AT23224.pep
MATRSEETVRSLAHWQFLAGGLSGFIEIICFHPLDVVKTRMQIQGAHPFG
GEVVYTCPLDAIVKIYRYEGLSSLWKGIVPPICVETPKRGGKFLMYESLK
PYFQFGAPQPTPLTHAMSGSMAAILESFLVNPFEVVKITQQAHRGKRLKT
LSVVKYIIKHDGYGIKGLYRGITALVARNAVFHFGFFGFYNALKDIVPSP
EDKTYNILRKVIIAGLASSLACVMSVTLDMAKCRIQGPQPVKGEVKYQWT
ISTIKSTFKEEGFRSLFKGLGAMILRVGPGGAMLLVTYEYLFEFLKSQNI
*

AT23224.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22093-PA 302 GF22093-PA 7..296 6..295 909 56.6 Plus
Dana\GF21179-PA 331 GF21179-PA 22..326 1..295 773 49.8 Plus
Dana\GF23336-PA 693 GF23336-PA 342..616 13..291 267 27.8 Plus
Dana\GF20410-PA 381 GF20410-PA 25..360 16..300 239 25.1 Plus
Dana\GF17680-PA 439 GF17680-PA 81..406 16..290 238 26.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24039-PA 300 GG24039-PA 1..300 1..300 1358 83.3 Plus
Dere\GG12807-PA 306 GG12807-PA 14..301 13..295 781 52.1 Plus
Dere\GG11935-PA 682 GG11935-PA 329..603 13..291 275 28.5 Plus
Dere\GG14152-PA 461 GG14152-PA 104..438 16..300 251 26.7 Plus
Dere\GG25109-PA 337 GG25109-PA 52..335 29..298 247 28.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13646-PA 313 GH13646-PA 40..308 27..295 758 50.6 Plus
Dgri\GH17661-PA 308 GH17661-PA 17..303 13..295 745 48.8 Plus
Dgri\GH23534-PA 315 GH23534-PA 20..279 16..269 292 31.5 Plus
Dgri\GH18316-PA 398 GH18316-PA 46..364 16..290 249 27 Plus
Dgri\GH15793-PA 310 GH15793-PA 14..292 14..291 247 29.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PB 300 CG9582-PB 1..300 1..300 1563 100 Plus
CG9582-PA 300 CG9582-PA 1..300 1..300 1563 100 Plus
CG5254-PA 306 CG5254-PA 14..301 13..295 770 52.1 Plus
CG5254-PB 237 CG5254-PB 1..232 65..295 666 53.4 Plus
aralar1-PB 679 CG2139-PB 328..600 15..291 270 28 Plus
aralar1-PD 682 CG2139-PD 331..603 15..291 270 28 Plus
aralar1-PA 682 CG2139-PA 331..603 15..291 270 28 Plus
aralar1-PF 694 CG2139-PF 331..603 15..291 270 28 Plus
aralar1-PC 695 CG2139-PC 344..616 15..291 270 28 Plus
aralar1-PE 707 CG2139-PE 356..628 15..291 270 28 Plus
GC2-PB 319 CG12201-PB 23..293 16..279 253 29.7 Plus
GC1-PB 321 CG18347-PB 24..298 16..279 246 29.4 Plus
GC1-PA 321 CG18347-PA 24..298 16..279 246 29.4 Plus
Ucp4B-PA 337 CG18340-PA 55..335 32..298 235 28.3 Plus
CG2616-PB 449 CG2616-PB 92..426 16..300 235 26.2 Plus
CG2616-PA 449 CG2616-PA 92..426 16..300 235 26.2 Plus
CG1907-PA 317 CG1907-PA 20..300 16..291 233 28.8 Plus
CG18418-PA 311 CG18418-PA 15..281 14..279 227 27.5 Plus
MME1-PA 299 CG3476-PA 18..299 17..297 226 25.3 Plus
Ucp4A-PB 340 CG6492-PB 44..331 17..291 226 25.5 Plus
Ucp4A-PA 340 CG6492-PA 44..331 17..291 226 25.5 Plus
CG1628-PC 305 CG1628-PC 19..296 17..290 223 27 Plus
CG1628-PB 459 CG1628-PB 173..450 17..290 223 27 Plus
sesB-PE 299 CG16944-PE 14..299 17..295 221 26.8 Plus
sesB-PB 299 CG16944-PB 14..299 17..295 221 26.8 Plus
sesB-PA 299 CG16944-PA 14..299 17..295 221 26.8 Plus
sesB-PD 312 CG16944-PD 27..312 17..295 221 26.8 Plus
sesB-PC 312 CG16944-PC 27..312 17..295 221 26.8 Plus
CG8026-PD 322 CG8026-PD 8..306 2..295 220 25.4 Plus
Bmcp-PB 303 CG7314-PB 10..303 17..294 217 26.1 Plus
Bmcp-PA 303 CG7314-PA 10..303 17..294 217 26.1 Plus
CG7514-PA 301 CG7514-PA 13..289 14..296 215 27.6 Plus
Shawn-PE 387 CG14209-PE 41..372 16..300 212 24 Plus
Shawn-PD 387 CG14209-PD 41..372 16..300 212 24 Plus
Shawn-PC 387 CG14209-PC 41..372 16..300 212 24 Plus
Shawn-PB 387 CG14209-PB 41..372 16..300 212 24 Plus
Ant2-PC 307 CG1683-PC 22..306 17..294 206 24.5 Plus
Ant2-PB 307 CG1683-PB 22..306 17..294 206 24.5 Plus
Ant2-PA 307 CG1683-PA 22..306 17..294 206 24.5 Plus
colt-PD 306 CG3057-PD 19..298 17..294 202 25.2 Plus
colt-PA 306 CG3057-PA 19..298 17..294 202 25.2 Plus
CG8026-PB 304 CG8026-PB 8..302 2..291 199 24.4 Plus
CG5646-PA 303 CG5646-PA 9..299 17..299 181 23.7 Plus
CG4995-PB 399 CG4995-PB 38..225 110..300 175 27.8 Plus
CG4995-PA 399 CG4995-PA 38..225 110..300 175 27.8 Plus
CG4995-PB 399 CG4995-PB 44..315 17..298 174 25.3 Plus
CG4995-PA 399 CG4995-PA 44..315 17..298 174 25.3 Plus
CG4995-PD 360 CG4995-PD 5..276 17..298 174 25.3 Plus
CG4995-PC 360 CG4995-PC 5..276 17..298 174 25.3 Plus
CG4995-PD 360 CG4995-PD 20..186 131..300 173 30.1 Plus
CG4995-PC 360 CG4995-PC 20..186 131..300 173 30.1 Plus
CG4743-PA 297 CG4743-PA 14..284 1..289 172 21.8 Plus
CG18327-PB 304 CG18327-PB 1..293 12..291 170 21.2 Plus
CG18327-PA 304 CG18327-PA 1..293 12..291 170 21.2 Plus
CG18324-PB 307 CG18324-PB 6..293 17..291 170 24 Plus
CG5646-PA 303 CG5646-PA 102..293 14..194 151 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21513-PA 310 GI21513-PA 17..305 13..295 790 50.2 Plus
Dmoj\GI11957-PA 273 GI11957-PA 1..270 25..298 644 45.3 Plus
Dmoj\GI11946-PA 269 GI11946-PA 2..263 32..295 619 45.1 Plus
Dmoj\GI22760-PA 695 GI22760-PA 342..616 13..291 252 27.5 Plus
Dmoj\GI12576-PA 310 GI12576-PA 14..292 14..291 239 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21377-PA 310 GL21377-PA 17..305 13..295 800 51.6 Plus
Dper\GL25542-PA 294 GL25542-PA 15..289 10..295 742 51.4 Plus
Dper\GL14047-PA 689 GL14047-PA 342..616 13..291 264 27.5 Plus
Dper\GL22256-PA 321 GL22256-PA 16..288 14..269 246 28.3 Plus
Dper\GL22258-PA 315 GL22258-PA 27..289 28..279 246 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21892-PA 305 GA21892-PA 15..300 10..295 872 57 Plus
Dpse\GA18765-PA 310 GA18765-PA 17..305 13..295 798 51.6 Plus
Dpse\GA15263-PA 689 GA15263-PA 342..616 13..291 264 27.5 Plus
Dpse\GA14898-PA 321 GA14898-PA 16..288 14..269 246 28.3 Plus
Dpse\GA27431-PA 315 GA27431-PA 27..289 28..279 237 27.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12561-PA 300 GM12561-PA 1..300 1..300 1531 96 Plus
Dsec\GM19087-PA 306 GM19087-PA 14..301 13..295 776 51.7 Plus
Dsec\GM12154-PA 682 GM12154-PA 329..603 13..291 271 27.8 Plus
Dsec\GM23991-PA 325 GM23991-PA 29..299 16..279 261 29.4 Plus
Dsec\GM18586-PA 337 GM18586-PA 52..335 29..298 253 28.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22366-PA 300 GD22366-PA 1..300 1..300 1532 96 Plus
Dsim\GD16525-PA 306 GD16525-PA 14..301 13..295 776 51.7 Plus
Dsim\GD23374-PA 336 GD23374-PA 51..334 29..298 248 28.7 Plus
Dsim\GD19943-PA 450 GD19943-PA 93..422 16..295 245 26.5 Plus
Dsim\GD21444-PA 317 GD21444-PA 20..302 16..293 237 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19052-PA 311 GJ19052-PA 1..306 1..295 796 48.7 Plus
Dvir\GJ14089-PA 312 GJ14089-PA 28..307 15..295 701 47.3 Plus
Dvir\GJ23512-PA 306 GJ23512-PA 24..280 28..279 292 31.2 Plus
Dvir\GJ10949-PA 402 GJ10949-PA 48..369 16..290 253 28.2 Plus
Dvir\GJ15480-PA 311 GJ15480-PA 15..293 14..291 249 28.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23706-PA 298 GK23706-PA 14..298 16..300 799 51.9 Plus
Dwil\GK16434-PA 305 GK16434-PA 15..300 13..295 779 51.2 Plus
Dwil\GK13128-PA 679 GK13128-PA 331..603 15..291 275 28.7 Plus
Dwil\GK11062-PA 461 GK11062-PA 100..438 16..300 237 27 Plus
Dwil\GK11426-PA 324 GK11426-PA 39..291 28..269 233 30 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10632-PA 300 GE10632-PA 1..300 1..300 1394 87 Plus
Dyak\GE16633-PA 306 GE16633-PA 14..301 13..295 781 52.1 Plus
Dyak\GE23386-PA 682 GE23386-PA 329..603 13..291 270 27.8 Plus
Dyak\GE23862-PA 317 GE23862-PA 20..302 16..293 239 28.6 Plus
Dyak\GE26151-PA 321 GE26151-PA 36..288 28..269 234 30 Plus

AT23224.hyp Sequence

Translation from 38 to 940

> AT23224.hyp
MATRSEETVRSLAHWQFLAGGLSGFIEIICFHPLDVVKTRMQIQGAHPFG
GEVVYTCPLDAIVKIYRYEGLSSLWKGIVPPICVETPKRGGKFLMYESLK
PYFQFGAPQPTPLTHAMSGSMAAILESFLVNPFEVVKITQQAHRGKRLKT
LSVVKYIIKHDGYGIKGLYRGITALVARNAVFHFGFFGFYNALKDIVPSP
EDKTYNILRKVIIAGLASSLACVMSVTLDMAKCRIQGPQPVKGEVKYQWT
ISTIKSTFKEEGFRSLFKGLGAMILRVGPGGAMLLVTYEYLFEFLKSQNI
*

AT23224.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9582-PB 300 CG9582-PB 1..300 1..300 1563 100 Plus
CG9582-PA 300 CG9582-PA 1..300 1..300 1563 100 Plus
CG5254-PA 306 CG5254-PA 14..301 13..295 770 52.1 Plus
CG5254-PB 237 CG5254-PB 1..232 65..295 666 53.4 Plus
aralar1-PB 679 CG2139-PB 328..600 15..291 270 28 Plus