Clone AT23419 Report

Search the DGRC for AT23419

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:234
Well:19
Vector:pOTB7
Associated Gene/TranscriptCG32252-RA
Protein status:AT23419.pep: wuzgold
Sequenced Size:998

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15008 2002-01-01 Sim4 clustering to Release 2
CG32252 2002-04-21 Blastp of sequenced clone
CG32252 2003-01-01 Sim4 clustering to Release 3
CG32252 2008-04-29 Release 5.5 accounting
CG32252 2008-08-15 Release 5.9 accounting
CG1332 2008-08-15 Release 5.9 accounting
CG32252 2008-12-18 5.12 accounting
CG1332 2008-12-18 5.12 accounting

Clone Sequence Records

AT23419.complete Sequence

998 bp (998 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113295

> AT23419.complete
TGACACAAGACACAATAAATAAAACTAGGGTGCGCTAAAAGCAGAACGAA
GGAAACTAGAACGACTACAACTTATGCTACGCAGAGGGTAAAATTCGGGA
ATTCAGTAGGTCAGCCAGTGTTCATTCCAGCTCCTGCTGAACCTAAACAT
TTAGCACGGAATGCTTCTTATTGCCGCCGGAGGGCAGTTGCACGGCGATC
ACCGCCAAGCGTCCATCTCGAAGCGGCGCCAGAATGTGGGTGTTGCCCGG
AGTGACCACCACCGTCTGGATGGGCACGTGCAGGGGAATGTCGAAAACGG
GCTTCAAGCTGGAAAAGAAGAAGTCTGCTCATGGTGATATCGCCGGCATC
GTCGGCCACCACCAGGTAGTCGGAGGCACTAGCCAATCCCGTCACCCTGC
CAGAAACGTATTTGGAGCCCAGACTGCAGCCGTTGATGCTGTACACGTGC
ACCGAGTGCGAGGTGTCATCCAGAGCACTGAATGCAATGTGACCTGTGTG
TAAAGGATACAGAAAAGAAGAGCAATCAGAATTGTGGTTCAATCATGTGA
AGCATTCTTTGATCATATCAGCTCAGATGACAGAATGTGGGGCAGGGCGT
AGTGGCGTTAATCTACGCAGTGGAAATGCCATTATGCTATTAGACGAGGT
CCGGCCCACTCTGGTCTGCTGATAACCTGACATCGCATAAAAACATTATC
ACATGGCGACATACTACATACTACAAGTCCGAGCAATGCGTAGTTGCTCT
TATCTACACAAGTATCCGTGTTATGTGGCGGCACTTGTATCTCTGCATCT
GTAAATGTATCTGTATGCCAATGCCACCCAGCGAAACGCGTTCAGAAGGA
AGAGCCACTAAATAGCCTAGATTGGATCTGAATGAACTTCCTAAAGTGAC
CCGGCCACGCGCACAGAAATAACTAGTATAAACCGTGCCCAGTTGGTTTT
GGCCAATCTTGTACGAGTAGTTCATTCAACAAAAAAAAAAAAAAAAAA

AT23419.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32252-RA 995 CG32252-RA 1..988 1..988 4940 100 Plus
CG1332-RA 4102 CG1332-RA 2524..2832 309..1 1545 100 Minus
CG1332-RA 4102 CG1332-RA 2346..2518 494..322 865 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4221090..4221748 980..322 3295 100 Minus
chr3L 24539361 chr3L 4221798..4222120 323..1 1615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:57:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4221696..4222362 988..322 3335 100 Minus
3L 28110227 3L 4222412..4222734 323..1 1615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4221696..4222362 988..322 3335 100 Minus
3L 28103327 3L 4222412..4222734 323..1 1615 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:49:07 has no hits.

AT23419.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:50:13 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4221090..4221746 324..980 100 <- Minus
chr3L 4221798..4222120 1..323 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:19:07 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..270 234..503 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:47 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..270 234..503 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:09 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..270 234..503 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:41:58 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..980 1..980 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:47 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..980 1..980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:47:12 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8081..8573 1..502 97   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:09 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..980 1..980 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:43:25 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8081..8573 1..502 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:13 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4221704..4222360 324..980 100 <- Minus
3L 4222412..4222734 1..323 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:13 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4221704..4222360 324..980 100 <- Minus
3L 4222412..4222734 1..323 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:50:13 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4221704..4222360 324..980 100 <- Minus
3L 4222412..4222734 1..323 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:12 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4221704..4222360 324..980 100 <- Minus
arm_3L 4222412..4222734 1..323 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:47:12 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4221704..4222360 324..980 100 <- Minus
arm_3L 4222412..4222734 1..323 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:19 Download gff for AT23419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4221704..4222360 324..980 100 <- Minus
3L 4222412..4222734 1..323 100   Minus

AT23419.hyp Sequence

Translation from 233 to 502

> AT23419.hyp
MWVLPGVTTTVWMGTCRGMSKTGFKLEKKKSAHGDIAGIVGHHQVVGGTS
QSRHPARNVFGAQTAAVDAVHVHRVRGVIQSTECNVTCV*
Sequence AT23419.hyp has no blast hits.

AT23419.pep Sequence

Translation from 233 to 502

> AT23419.pep
MWVLPGVTTTVWMGTCRGMSKTGFKLEKKKSAHGDIAGIVGHHQVVGGTS
QSRHPARNVFGAQTAAVDAVHVHRVRGVIQSTECNVTCV*

AT23419.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16623-PA 27 GG16623-PA 1..27 1..27 137 96.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12729-PA 184 GL12729-PA 1..32 1..32 147 81.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16789-PA 332 GA16789-PA 265..321 31..87 194 59.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13996-PA 88 GM13996-PA 1..87 1..88 425 95.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13277-PA 88 GD13277-PA 1..87 1..88 416 93.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12565-PA 94 GJ12565-PA 1..86 1..88 243 68.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20633-PA 89 GE20633-PA 1..88 1..88 377 80.7 Plus