Clone AT24188 Report

Search the DGRC for AT24188

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:241
Well:88
Vector:pOTB7
Associated Gene/TranscriptCG5327-RA
Protein status:AT24188.pep: gold
Preliminary Size:483
Sequenced Size:2153

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5327 2002-01-01 Sim4 clustering to Release 2
CG5327 2002-02-22 Blastp of sequenced clone
CG5327 2008-04-29 Release 5.5 accounting
CG5327 2008-08-15 Release 5.9 accounting
CG5327 2008-12-18 5.12 accounting

Clone Sequence Records

AT24188.complete Sequence

2153 bp (2153 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089418

> AT24188.complete
CCGAAAACTGTCAATTCAACATTTTGTTTTGTTCTTTCGAAATTGTTCAA
ATTTTAAATTGAAATGGTGGAGCAACAAAAAAAGCGCTTGGAGGGCGCCA
TTAGCGAAATGATCGAGGACATGTACCGCACCCACTTGCGCAGAATGCAG
TCCACGATGCACCGCTGTGCCGCCCGCTGCTGCGACGATGATCGAGGGAC
GCTGGAGAGCGTACAGAACTGCATCGAGAAGTGCGCCGGTCCCCTGATGG
ATGCCCAGGATTTCCTGCAGCACGAGCTGGGCCAATTCCAGAATAGACTT
CAAAACTGCGTTAGGGATTGCAACAGCGATGCGCGGTCTCAGATGCCCAG
CAATCCGAGTGACCGGGACATGTCCCGATCCCAGCACATGTTTGAGAGTT
GCACGAACAACTGTGTGGACAAGTACATAAACCTGATACCTGGTCTGCTC
AAGTCGATCAAACAAACATTGGACAGGGGTCCGCCGAAAAGATCACGCAA
CATGGATGTCTAACCGGGATGGAATTCAGGATTTGGTGACATTTAAAAAA
GCACATTCAAGCAGTTGTCAATGGTTCACTTATTTATTGAATATTTTTGG
TACAGCTAACACTTAAAGTACACTAATCGCTGCTGTGATCCGGGATAGCC
AATGGATTGGAATGGGAACTTATCAGCGCCAACGTGGCCCTTGCTCGCCA
TGTTTGATAGCTCAGCTCCCGGATCTTCTTAGGCCCTAGCTCATTAAATA
TCTAGTAATAAAGATTCTTAGTATTATGCAACAATACGAGAGGCTATATT
TTTAGGATCTTGATGGATCTACTGCTCGTTCTGCTTCGTCCTCACGCCGT
ATTTGCTCCAGAAGGTGACCTTGGCGGTGGTCTTCTTCAGGTTGTCCTGG
AACACGGAGCACGTGTCGAAGGGTGGACAGTATAGGTGAAGAGAGACAGA
GGTATCCGAATGGCTGGGGTTCTCCACGCGATGCAGACCCAGATTGTCTA
TGGATAACAAAACGAAAAAAAAAACAGCCACATCATTGACGGCGATTGGT
GTCTCCCCAATCTCCACCAGCTCTCGGCTATCGATCTCGCCATCCGGATG
ATGGGACCGGCCGTTGTCCCTGGCAGATCTATTGGGATACTCGTAGCGCT
TCTCGCGCAGATCACCCTTCAGCATCTTCATGAAGCAATGGGAATCGGCA
TGGTCGTGCACCGAGGAGCCGTGTCCTTCGCCCCAGCACAAAATCAGAAG
ATTGAACTTTCCATTGCCAGCATCCACGAGATTCCGCGTGTAGGTGTAAC
GATCGAACTTGGCATATTTGCGCCACTCCCGCGGATTGGACTTGTAGCTG
AGCATAAGGTGATTCACCATCTCGATGTTAACATAGTTCGACTCGAATTC
CCGGTGAAGTGCGGCCACCAAGTCCGATAGGGAATTCACCTCCGGTCCGT
ATTTCAGGGGTTTCTCCAGCGGCTGATAGTAGCTAGTGGCCTGACGCAGG
TACTTCTCCTGGTCAACCTGCTCGATCTCGGTGTCGATCTTGGACAGGGC
CATTTTGGGCTTGCTCTGATTGACCTAGGTTGCGAAAAGGGAAGCGGAAG
TTAGAGTGGTGGTGCATCAGTTGAGGCTGAAGGGCGTGGAAAACTACCTA
TAAAGTCTATAAAGATCACTGCTCAATTGATTTAGATGAATTACGTTGTA
AAGTCGATGATCGCTGATAATAGCTATTGGTATATATATATATGAATATT
CCGATTCGTTGCTGTTACAATTGATTGAATTGCTTCGACTAACCGCACAC
GCTCCACCTCGGATCGCAAAATTCGAACTGAATTCTGGAGATTTCGCTCT
CCTGTCCAGGCTGCATAATCAGCTCGGATCCGACGTAAATCGGAGGCGCA
AGTCCAAAGCAATAACAAAAACAAGAAGTCGCCGGCGATAACCGTCCATC
CAACTTATCAATAGCAGATTTTACCAATACCCTCGGCTATATAATACACG
TATTTCTCAGTAGATGATGATAGATCGAATGTTGCCAGGAGGGGCTCAAC
AGATGTGCCTGAATTTGAGACAAGAGGTTAACGGCGATCTAATGGGATCG
TTTGGCAAATAAAAAACAAATTTATTCCACAATAAAAAAAAAAAAAAAAA
AAA

AT24188.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-RA 2137 CG5327-RA 1..2137 1..2134 10465 99.3 Plus
CG5493-RA 1169 CG5493-RA 179..729 1577..1027 2695 99.2 Minus
CG5493.a 1059 CG5493.a 69..617 1575..1027 2685 99.2 Minus
CG5493.a 1059 CG5493.a 628..1059 998..567 2145 99.7 Minus
CG5493-RA 1169 CG5493-RA 740..1169 998..569 2135 99.7 Minus
CG5493-RA 1169 CG5493-RA 1..183 1828..1646 915 100 Minus
CG5493.a 1059 CG5493.a 1..71 1862..1792 355 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14504334..14505441 1027..2133 5265 98.6 Plus
chr2R 21145070 chr2R 14503563..14504272 315..1024 3475 99.3 Plus
chr2R 21145070 chr2R 14503318..14503485 149..316 840 100 Plus
chr2R 21145070 chr2R 14503111..14503260 1..150 750 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:57:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18617211..18618318 1027..2134 5465 99.5 Plus
2R 25286936 2R 18616440..18617149 315..1024 3475 99.3 Plus
2R 25286936 2R 18616195..18616362 149..316 840 100 Plus
2R 25286936 2R 18615988..18616137 1..150 750 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18618410..18619517 1027..2134 5465 99.5 Plus
2R 25260384 2R 18617639..18618348 315..1024 3475 99.2 Plus
2R 25260384 2R 18617394..18617561 149..316 840 100 Plus
2R 25260384 2R 18617187..18617336 1..150 750 100 Plus
Blast to na_te.dros performed on 2019-03-16 00:43:49 has no hits.

AT24188.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:29 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14503111..14503260 1..150 100 -> Plus
chr2R 14503320..14503484 151..315 100 -> Plus
chr2R 14503564..14504277 316..1026 98 -> Plus
chr2R 14504334..14505441 1027..2133 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:19:50 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 64..513 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:41 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 64..513 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:58:13 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 64..513 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:26 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 64..513 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:12:58 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..450 64..513 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:54 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..2136 1..2133 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:40 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..2136 1..2133 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:58:13 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..2136 1..2133 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:26 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..2136 1..2133 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:12:58 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5327-RA 1..2136 1..2133 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:29 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18616197..18616361 151..315 100 -> Plus
2R 18615988..18616137 1..150 100 -> Plus
2R 18616441..18617154 316..1026 98 -> Plus
2R 18617211..18618317 1027..2133 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:29 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18616197..18616361 151..315 100 -> Plus
2R 18615988..18616137 1..150 100 -> Plus
2R 18616441..18617154 316..1026 98 -> Plus
2R 18617211..18618317 1027..2133 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:29 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18616197..18616361 151..315 100 -> Plus
2R 18615988..18616137 1..150 100 -> Plus
2R 18616441..18617154 316..1026 98 -> Plus
2R 18617211..18618317 1027..2133 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:58:13 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14503493..14503642 1..150 100 -> Plus
arm_2R 14503702..14503866 151..315 100 -> Plus
arm_2R 14503946..14504659 316..1026 98 -> Plus
arm_2R 14504716..14505822 1027..2133 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:31 Download gff for AT24188.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18617640..18618353 316..1026 98 -> Plus
2R 18618410..18619516 1027..2133 99   Plus
2R 18617187..18617336 1..150 100 -> Plus
2R 18617396..18617560 151..315 100 -> Plus

AT24188.pep Sequence

Translation from 63 to 512

> AT24188.pep
MVEQQKKRLEGAISEMIEDMYRTHLRRMQSTMHRCAARCCDDDRGTLESV
QNCIEKCAGPLMDAQDFLQHELGQFQNRLQNCVRDCNSDARSQMPSNPSD
RDMSRSQHMFESCTNNCVDKYINLIPGLLKSIKQTLDRGPPKRSRNMDV*

AT24188.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11975-PA 153 GF11975-PA 1..147 1..147 699 87.8 Plus
Dana\GF11974-PA 146 GF11974-PA 1..140 1..140 423 48.6 Plus
Dana\GF19183-PA 134 GF19183-PA 8..133 2..139 242 34.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21910-PA 149 GG21910-PA 1..149 1..149 789 99.3 Plus
Dere\GG21909-PA 146 GG21909-PA 1..140 1..140 419 47.9 Plus
Dere\GG19017-PA 131 GG19017-PA 9..130 3..139 191 32.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20301-PA 148 GH20301-PA 1..144 1..144 617 77.1 Plus
Dgri\GH25050-PA 148 GH25050-PA 1..144 1..144 617 77.1 Plus
Dgri\GH20300-PA 146 GH20300-PA 1..140 1..140 410 46.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 149 CG5327-PA 1..149 1..149 800 100 Plus
CG5323-PA 146 CG5323-PA 1..140 1..140 424 47.1 Plus
CG12661-PB 131 CG12661-PB 8..130 2..139 260 32.6 Plus
CG12661-PA 131 CG12661-PA 8..130 2..139 260 32.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19971-PA 154 GI19971-PA 1..144 1..144 618 77.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17028-PA 153 GL17028-PA 1..144 1..144 687 85.4 Plus
Dper\GL17027-PA 146 GL17027-PA 1..140 1..140 424 48.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18807-PA 153 GA18807-PA 1..144 1..144 688 86.1 Plus
Dpse\GA18804-PA 146 GA18804-PA 1..140 1..140 424 48.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21901-PA 149 GM21901-PA 1..149 1..149 771 96.6 Plus
Dsec\GM21900-PA 146 GM21900-PA 1..140 1..140 421 47.9 Plus
Dsec\GM13692-PA 131 GM13692-PA 9..130 3..139 195 32.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11397-PA 149 GD11397-PA 1..149 1..149 771 96.6 Plus
Dsim\GD11396-PA 146 GD11396-PA 1..140 1..140 421 47.9 Plus
Dsim\GD16092-PA 131 GD16092-PA 9..130 3..139 198 33.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21220-PA 154 GJ21220-PA 1..144 1..144 620 76.4 Plus
Dvir\GJ21219-PA 146 GJ21219-PA 1..140 1..140 414 47.1 Plus
Dvir\GJ15392-PA 134 GJ15392-PA 9..133 4..139 254 36 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21965-PA 152 GK21965-PA 1..144 1..144 666 81.9 Plus
Dwil\GK21964-PA 125 GK21964-PA 1..121 1..121 350 47.1 Plus
Dwil\GK16197-PA 136 GK16197-PA 7..135 2..139 229 31.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11984-PA 149 GE11984-PA 1..149 1..149 783 98 Plus
Dyak\GE11983-PA 146 GE11983-PA 1..140 1..140 417 47.9 Plus
Dyak\GE17426-PA 132 GE17426-PA 10..131 3..139 183 32.1 Plus

AT24188.hyp Sequence

Translation from 63 to 512

> AT24188.hyp
MVEQQKKRLEGAISEMIEDMYRTHLRRMQSTMHRCAARCCDDDRGTLESV
QNCIEKCAGPLMDAQDFLQHELGQFQNRLQNCVRDCNSDARSQMPSNPSD
RDMSRSQHMFESCTNNCVDKYINLIPGLLKSIKQTLDRGPPKRSRNMDV*

AT24188.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5327-PA 149 CG5327-PA 1..149 1..149 800 100 Plus
CG5323-PA 146 CG5323-PA 1..140 1..140 424 47.1 Plus
CG12661-PB 131 CG12661-PB 8..130 2..139 260 32.6 Plus
CG12661-PA 131 CG12661-PA 8..130 2..139 260 32.6 Plus