Clone AT24727 Report

Search the DGRC for AT24727

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:247
Well:27
Vector:pOTB7
Associated Gene/TranscriptCG14590-RA
Protein status:AT24727.pep: gold
Preliminary Size:1596
Sequenced Size:1895

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14590 2002-01-01 Sim4 clustering to Release 2
CG14590 2002-01-18 Blastp of sequenced clone
CG14590 2003-01-01 Sim4 clustering to Release 3
CG14590 2008-04-29 Release 5.5 accounting
CG14590 2008-08-15 Release 5.9 accounting
CG14590 2008-12-18 5.12 accounting

Clone Sequence Records

AT24727.complete Sequence

1895 bp (1895 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089424

> AT24727.complete
GAATAAATGGTGTCAAGCACGGAATGTCCTGTTTGCGGAGTTGCTGCCTC
ACAAGCGTGCACTAGGTGCAAAATGGTGCGATACTGCGACCGAGAGCACC
AGAAGCAGCACTGGCCGCAGCACAAGCGCAGATGTAGGCCATTCAGCGAG
GAGCAGGATGCCGAGCTGGGCAGATATTTGAAGGTTACCCAGAACATAGC
AGCCGGGCAAATAGTCTTCATTGAGGAGCCCCTAGTGGTGGGTCCCAAGT
GGTATCTCTCCGACGCAGACAAGGAGGCCTCTAACGTTCCGTGTGTAGGC
TGTTACACTCCGTGCCGTCTGGGGAAGCACCAGTGTCGAAGATGCCGTTG
GCCAGTCTGCAGCGCAGGCTGCAAGCACGAGTCAATGGAATGCAGCGTGC
TTAGCCTCGGATCGGGTTCACCAACTCGGGCAGATGCCCGCTCATTGAAC
GACTACTTCAGGGGCGATGCTCTTTTGGTGCTCAAATGCCTTCTGTTGCA
GCGACAGAGTCCCACGAAATGGTCCGCGTTGTTAGAGATGCAGTCTCATG
AGGAGGAGCGTAAGGGCACCGATCTGTACGAGGAAGCAGAGAAGCGAGTA
GTGACCTACCTTCAAAAGCGGTTTTTATGTAGACTTAAGCAAACTAATCC
AAACCTTCTGACCGATTGTGGACCAGAGATGCTGCATCGGCTTTGCGGCA
TCATCGAAACAAACTTTATGGTTATCGAACTCCCGAGTGGCGTGGAACTC
AGCGGGTTGTTCCGGCAGGCCTGCATGATGGAGCATGCTTGTCAGCCCAA
CTGCGACTTTCAGTTTGATAACAAGACTCAGCAAGTTGCTGTGCGTGCTG
GCTGTGACTTGCGAAAAGGCGACCACCTACGGATTACATACACAAATATC
CTATGGGGCACGCAACTTCGCCAGCACCATCTTCGACTAACGAAGCATTT
CAGCTGCCGCTGCAGCCGCTGTCTCGATCCAACGGAATATGGCACCTATA
TAAGTGCGCTGACTTGTCTGGGGGATGTAAATCAGACCTGTGGAGGAACC
CACTTGCCCGTGGATCCACTGGACGAGAACACACAGTGGAAGTGCGACAC
TTGCCCAATGATAGTGGATGGAGCTTACGTGGCTGAACTGCAGTCCCACA
TGACCGAGCAGGTGGAGGGCTTATTAGCCGGATGCCCCTCCGCGAATCAG
GTGGAACTTCTGTTGGCCCGCCTGACCCATATGTTGCATCCAAATCATTT
TCACACGTTCAACCTAAAGCACACATTAATCCAGCTGTATGGTAACGAAG
CTGGCTTGGAGTTGGGCGTGCTGAGCAACACGCAGCTGGAGCGCAAACTG
AGGCTCTGCGGTGAGCTCTACAACGTATGCCGGCGACTGGATCCATATAG
CATTAAGCTGGCTATCTATGTCACGGTCATCCTGATCGAGGTCGCCCACA
CGCTGCAGGAGCAGGCACGAAGGGCACCAGCAGAAGGAACTTCCCTCTTG
GGTCTTGCGCAAAGCCGTCTTAGGGAAGCGCATATGGTTTTGGAGAAAGA
GCAAGAATCAGTTGCCGGCAAAAAGCTAAACGAAAAATTGCAGATGGAAA
TCTTCGAGTGCGAAAAACTAATTTTAGCTCTTGCCTATAATCAAGATCAC
GAAGCCAATACAAAATAATTTTCTAGATCGGCGAAAGTGGTACAAGTGAA
CATTTTGAACACCGGATGCTGTTAGGTGCTGTTAAAACAAATCACACTTT
GTTAAAATCCAATGAAGCGCCGTTCAAAAGAAATTGTAAAACGAGACTAG
GAATCTTTTCAAAATACACATTTTTGTTGGGTTGCTTATAAAAACTATAA
GATATATATAAAATAAGATTTTAAAATAAAAAAAAAAAAAAAAAA

AT24727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG14590-RA 2078 CG14590-RA 187..2068 1..1882 9410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1965772..1967309 1877..340 7690 100 Minus
chr2R 21145070 chr2R 1967363..1967703 341..1 1705 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6078636..6080178 1882..340 7715 100 Minus
2R 25286936 2R 6080232..6080572 341..1 1705 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6079835..6081377 1882..340 7715 100 Minus
2R 25260384 2R 6081431..6081771 341..1 1705 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:05:39 has no hits.

AT24727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:06:35 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1965772..1967307 342..1877 100 <- Minus
chr2R 1967363..1967703 1..341 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:20:34 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1662 7..1668 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:46:11 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1662 7..1668 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:59:47 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1662 7..1668 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:14:32 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1662 7..1668 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:18:57 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1662 7..1668 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:10:32 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1877 1..1877 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:46:11 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1877 1..1877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:59:47 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1877 1..1877 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:14:32 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1877 1..1877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:18:57 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
CG14590-RA 1..1877 1..1877 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:06:35 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6078641..6080176 342..1877 100 <- Minus
2R 6080232..6080572 1..341 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:06:35 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6078641..6080176 342..1877 100 <- Minus
2R 6080232..6080572 1..341 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:06:35 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6078641..6080176 342..1877 100 <- Minus
2R 6080232..6080572 1..341 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:59:47 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1966146..1967681 342..1877 100 <- Minus
arm_2R 1967737..1968077 1..341 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:15 Download gff for AT24727.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6081431..6081771 1..341 100   Minus
2R 6079840..6081375 342..1877 100 <- Minus

AT24727.pep Sequence

Translation from 6 to 1667

> AT24727.pep
MVSSTECPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQ
DAELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCY
TPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSLGSGSPTRADARSLNDY
FRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAEKRVVT
YLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELSG
LFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILW
GTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHL
PVDPLDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAGCPSANQVE
LLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLELGVLSNTQLERKLRL
CGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGL
AQSRLREAHMVLEKEQESVAGKKLNEKLQMEIFECEKLILALAYNQDHEA
NTK*

AT24727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16861-PA 550 GF16861-PA 1..545 1..546 2183 75.5 Plus
Dana\GF10789-PA 438 GF10789-PA 4..429 1..438 523 29.7 Plus
Dana\GF13486-PA 517 GF13486-PA 1..482 2..514 510 29.5 Plus
Dana\GF15829-PA 507 GF15829-PA 21..419 55..463 470 33.3 Plus
Dana\GF20287-PA 528 GF20287-PA 44..501 45..517 433 27.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10833-PA 553 GG10833-PA 1..553 1..553 2718 92.2 Plus
Dere\GG13432-PA 530 GG13432-PA 4..506 2..517 566 30.6 Plus
Dere\GG20436-PA 515 GG20436-PA 4..480 7..514 498 30.2 Plus
Dere\GG23681-PA 507 GG23681-PA 21..419 55..463 464 32.6 Plus
Dere\GG20654-PA 488 GG20654-PA 8..476 46..532 401 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20950-PA 557 GH20950-PA 3..555 2..552 1995 69.1 Plus
Dgri\GH16955-PA 529 GH16955-PA 1..506 1..519 524 29.1 Plus
Dgri\GH19808-PA 515 GH19808-PA 4..459 7..490 477 27.6 Plus
Dgri\GH13590-PA 504 GH13590-PA 21..416 55..463 421 29.5 Plus
Dgri\GH17917-PA 545 GH17917-PA 69..472 54..468 419 28.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
SmydA-5-PA 553 CG14590-PA 1..553 1..553 2977 100 Plus
SmydA-2-PA 530 CG18136-PA 5..506 3..517 593 30.6 Plus
SmydA-1-PA 513 CG8503-PA 4..480 7..514 500 29.4 Plus
SmydA-3-PC 503 CG43129-PC 7..415 49..463 492 31 Plus
SmydA-3-PE 507 CG43129-PE 21..419 55..463 470 32 Plus
SmydA-3-PD 507 CG17086-PA 21..419 55..463 470 32 Plus
SmydA-4-PA 532 CG11160-PA 48..505 45..517 452 27.4 Plus
SmydA-7-PB 488 CG9640-PB 13..480 51..536 435 28.5 Plus
SmydA-7-PA 488 CG9640-PA 13..480 51..536 435 28.5 Plus
SmydA-6-PA 498 CG9642-PA 15..497 49..551 379 27.3 Plus
SmydA-4-PB 403 CG11160-PB 48..359 45..366 371 29.3 Plus
SmydA-4-PC 369 CG11160-PC 1..342 157..517 339 27.8 Plus
SmydA-8-PD 462 CG33548-PD 66..390 55..402 337 28.4 Plus
SmydA-8-PA 462 CG33548-PA 66..390 55..402 337 28.4 Plus
SmydA-8-PB 448 CG33548-PB 53..376 55..402 264 25.9 Plus
SmydA-9-PB 500 CG12119-PB 34..474 55..550 241 22.8 Plus
SmydA-9-PA 500 CG12119-PA 34..474 55..550 241 22.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21287-PA 551 GI21287-PA 3..549 2..546 1905 68.9 Plus
Dmoj\GI11814-PA 527 GI11814-PA 1..504 1..517 551 29.5 Plus
Dmoj\GI19093-PA 515 GI19093-PA 4..459 7..490 477 29.1 Plus
Dmoj\GI16059-PA 526 GI16059-PA 46..451 55..468 454 30.2 Plus
Dmoj\GI23580-PA 507 GI23580-PA 21..419 55..463 409 28.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11805-PA 528 GL11805-PA 15..524 37..546 2010 72.5 Plus
Dper\GL21959-PA 532 GL21959-PA 4..532 3..536 588 30.8 Plus
Dper\GL10122-PA 515 GL10122-PA 4..480 7..514 484 29.1 Plus
Dper\GL18252-PA 533 GL18252-PA 46..506 46..517 443 27.6 Plus
Dper\GL17551-PA 489 GL17551-PA 4..476 46..532 404 28.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13100-PA 549 GA13100-PA 1..545 2..546 2167 72.7 Plus
Dpse\GA14810-PA 532 GA14810-PA 4..532 3..536 591 30.8 Plus
Dpse\GA25085-PA 515 GA25085-PA 4..480 7..514 483 29.1 Plus
Dpse\GA10806-PA 533 GA10806-PA 46..506 46..517 444 27.6 Plus
Dpse\GA14319-PA 508 GA14319-PA 13..420 47..463 400 28.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16483-PA 486 GM16483-PA 1..484 23..551 2376 87.5 Plus
Dsec\GM14901-PA 530 GM14901-PA 4..506 2..517 574 30.8 Plus
Dsec\GM21522-PA 514 GM21522-PA 4..480 7..514 497 29.1 Plus
Dsec\GM18755-PA 507 GM18755-PA 21..419 55..463 445 31.8 Plus
Dsec\GM21750-PA 488 GM21750-PA 8..476 46..532 412 28.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10336-PA 531 GD10336-PA 1..531 23..553 2761 96.4 Plus
Dsim\GD12310-PA 530 GD12310-PA 4..506 2..517 582 30.8 Plus
Dsim\GD16997-PA 532 GD16997-PA 27..501 29..513 433 27.4 Plus
Dsim\GD11241-PA 488 GD11241-PA 8..476 46..532 402 28.5 Plus
Dsim\GD23739-PA 325 GD23739-PA 2..237 228..463 346 35 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20889-PA 553 GJ20889-PA 5..550 4..546 2026 71.1 Plus
Dvir\GJ13517-PA 528 GJ13517-PA 1..472 1..487 592 31.5 Plus
Dvir\GJ20068-PA 515 GJ20068-PA 4..458 7..489 470 28 Plus
Dvir\GJ20777-PA 504 GJ20777-PA 21..416 55..463 437 29 Plus
Dvir\GJ15632-PA 527 GJ15632-PA 51..513 54..549 434 28.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21998-PA 557 GK21998-PA 3..544 4..540 2061 71.4 Plus
Dwil\GK12548-PA 534 GK12548-PA 6..509 5..517 591 30 Plus
Dwil\GK20779-PA 515 GK20779-PA 4..464 7..495 458 28.2 Plus
Dwil\GK21977-PA 487 GK21977-PA 13..482 51..539 383 29.3 Plus
Dwil\GK17864-PA 504 GK17864-PA 20..500 54..547 376 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19428-PA 526 GE19428-PA 1..525 23..547 2528 91.4 Plus
Dyak\GE22530-PA 530 GE22530-PA 4..506 2..517 585 31 Plus
Dyak\GE13567-PA 514 GE13567-PA 4..480 7..514 509 30.4 Plus
Dyak\GE18493-PA 507 GE18493-PA 21..419 55..463 452 31.9 Plus
Dyak\GE15901-PA 532 GE15901-PA 32..501 28..513 432 27.6 Plus

AT24727.hyp Sequence

Translation from 6 to 1667

> AT24727.hyp
MVSSTECPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQ
DAELGRYLKVTQNIAAGQIVFIEEPLVVGPKWYLSDADKEASNVPCVGCY
TPCRLGKHQCRRCRWPVCSAGCKHESMECSVLSLGSGSPTRADARSLNDY
FRGDALLVLKCLLLQRQSPTKWSALLEMQSHEEERKGTDLYEEAEKRVVT
YLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIETNFMVIELPSGVELSG
LFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRITYTNILW
GTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHL
PVDPLDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAGCPSANQVE
LLLARLTHMLHPNHFHTFNLKHTLIQLYGNEAGLELGVLSNTQLERKLRL
CGELYNVCRRLDPYSIKLAIYVTVILIEVAHTLQEQARRAPAEGTSLLGL
AQSRLREAHMVLEKEQESVAGKKLNEKLQMEIFECEKLILALAYNQDHEA
NTK*

AT24727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14590-PA 553 CG14590-PA 1..553 1..553 2977 100 Plus
CG18136-PA 530 CG18136-PA 5..506 3..517 593 30.6 Plus
CG8503-PA 513 CG8503-PA 4..480 7..514 500 29.4 Plus
CG43129-PC 503 CG43129-PC 7..415 49..463 492 31 Plus
CG43129-PE 507 CG43129-PE 21..419 55..463 470 32 Plus