Clone AT25112 Report

Search the DGRC for AT25112

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:251
Well:12
Vector:pOTB7
Associated Gene/TranscriptCG31820-RA
Protein status:AT25112.pep: gold
Sequenced Size:508

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31820-RA 2009-01-21 est gleaning
CG31820 2009-06-05 Manual selection by Joe Carlson

Clone Sequence Records

AT25112.complete Sequence

508 bp assembled on 2009-07-30

GenBank Submission: BT088987.1

> AT25112.complete
GCTCCGTACGCTTTCACCAGTACATAAACCAAAAGTACGAAAAAATTTCG
TGTTTCAACATTTTTGGAAATCTTTACTCAAGCATTTCTCTTGCCTTAAA
CAAAATTTATAACCTATCCTCCCGAAGATGTGTTGCCAAGGAGCCTGTGG
ATCGGTATCCTATGCCCTGGCTTATGGCCCCGTCGGACCCGCTCTGCCAG
CCATGAACTACAATAACTGCTGCTGTGGACCCAATCCTCCCTGTGGTCCC
TGGACATGTCCTCCTAACAGGTGCTGTTGCGCCGGCGAATGGGGTTGCTT
TGGGCCTTTTTACTGAGAAACCCAAGGTACGACAATTCCTGAAGAAAACG
ACGTGAAATTTTTTTGTGCTTTTGGTTTGAACCACATTTTCCCTTACACA
ATGGTTCGAGCTTTTCAATAAATTTATGTACTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

AT25112.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31820-RA 678 CG31820-RA 189..624 1..436 2105 98.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16004578..16004904 433..107 1560 98.5 Minus
chr2L 23010047 chr2L 16004956..16005061 106..1 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16005786..16006115 436..107 1575 98.5 Minus
2L 23513712 2L 16006167..16006272 106..1 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16005786..16006115 436..107 1575 98.4 Minus
2L 23513712 2L 16006167..16006272 106..1 530 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:46:59 has no hits.

AT25112.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:47:38 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16004578..16004904 107..433 98 <- Minus
chr2L 16004956..16005061 1..106 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:11 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 1..189 128..316 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:53:00 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RB 1..189 128..316 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:31:26 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 1..189 128..316 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:58 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 1..189 128..316 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-30 10:34:54 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 8..440 1..433 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:53:00 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 8..440 1..433 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:31:26 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 8..440 1..433 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:58 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
CG31820-RA 8..440 1..433 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:38 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16006167..16006272 1..106 100   Minus
2L 16005789..16006115 107..433 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:38 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16006167..16006272 1..106 100   Minus
2L 16005789..16006115 107..433 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:47:38 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16006167..16006272 1..106 100   Minus
2L 16005789..16006115 107..433 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:31:26 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16005789..16006115 107..433 98 <- Minus
arm_2L 16006167..16006272 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:43:52 Download gff for AT25112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16005789..16006115 107..433 98 <- Minus
2L 16006167..16006272 1..106 100   Minus

AT25112.hyp Sequence

Translation from 2 to 205

> AT25112.hyp
SVRFHQYINQKYEKISCFNIFGNLYSSISLALNKIYNLSSRRCVAKELVD
RYPMPWLMAPSDPLCQP*
Sequence AT25112.hyp has no blast hits.

AT25112.pep Sequence

Translation from 127 to 315

> AT25112.pep
MCCQGACGSVSYALAYGPVGPALPAMNYNNCCCGPNPPCGPWTCPPNRCC
CAGEWGCFGPFY*

AT25112.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19693-PA 62 GF19693-PA 1..62 1..62 289 93.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24183-PA 62 GG24183-PA 1..62 1..62 301 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11348-PA 61 GH11348-PA 1..61 1..62 148 91.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31820-PB 62 CG31820-PB 1..62 1..62 402 100 Plus
CG31820-PA 62 CG31820-PA 1..62 1..62 402 100 Plus
CG34167-PA 127 CG34167-PA 66..127 2..62 150 48.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12923-PA 61 GI12923-PA 1..61 1..62 148 91.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15317-PA 61 GL15317-PA 2..61 3..62 188 85 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16503-PA 61 GA16503-PA 2..61 3..62 188 85 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17921-PA 62 GM17921-PA 1..62 1..62 301 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21930-PA 62 GD21930-PA 1..62 1..62 301 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18187-PA 61 GJ18187-PA 1..61 1..62 143 90.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19371-PA 60 GK19371-PA 5..60 7..62 187 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19376-PA 62 GE19376-PA 1..62 1..62 301 100 Plus