Clone AT25231 Report

Search the DGRC for AT25231

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:252
Well:31
Vector:pOTB7
Associated Gene/TranscriptStrip-RB
Protein status:AT25231.pep: gold
Sequenced Size:3167

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11526 2003-01-01 Sim4 clustering to Release 3
CG11526 2003-02-13 Blastp of sequenced clone
CG11526 2008-04-29 Release 5.5 accounting
CG11526 2008-08-15 Release 5.9 accounting
CG11526 2008-12-18 5.12 accounting

Clone Sequence Records

AT25231.complete Sequence

3167 bp (3167 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003798

> AT25231.complete
ATATGGCTTGGAAACAGAAAAATAAACTCCTTTTTGACACTTGTAAAAAC
CAGTTAAGCTGTGGCGCCGTAAACGCCAGATCCTCGATGATGCAGTCCAT
CCAGTCTAGGATCAACGTGCTTAACACCATTGCTGCTTCCAGCAAGCGGA
TTGAACGCGCCAGCGTTGACACGGACACCCACGATGCGGACGCCAACTGC
GACGGGCCCGACCTGGACTTCGTGTACGCGGACGTGGATGGCTATCAGAA
CGAGATCGCTGAACTGTATAGCTACACGGAGTTCAGCGAGTTTCAGATGA
ACGTGAAGGCCTTCGAGGACCAGATGGAGCTGTACGACCTGCCGCCCAAC
TGGCAGAAGCAGGACTCCGCCTCCCAGCGCGGCATCGTGATGAAGCTGGT
GGACCAGCTGGAGGTCTCCGATCGATCCTTTCGCATGCAGGCCGCCCGGT
GCATCCTTTACCTGGCCCAAGGCTGCTGGGCGGAGGTTCAGTCGGACGAG
GAGCAGCACCAGATCACCAGGGACAATGTGCTGGTGCTCTACCAACTCGG
CGTCTTCGCCTCCTTCATCGACCTGCTCAACATGGAGATCGAAAGCGCCT
GCTCTCCGGACATTGTGGCCGTCAAGATCACTAACGTCACGCTTGTGGAC
TCCACGGACATTCGGGTGATCCTATCTGTGCTCTACATCATCACAGAAAC
GATTCGCGATGAAAAGGAAAAGGGCAGCGAAGACTACAGAGAGCTGGCCG
ACTCCTTTGTGCAAGAAATCAACTCACCACTACCAGATGGCGAACTTCTG
GCCGTCAAGCTGTTGGGCATGATCACACGGTTTTGCAGTGGCGCAGCACC
GCAGTTCCCCATGAAGAAGGTTGTCCTCCTGCTGTGGAAAGTTTCGCTGC
TGGGACTGGGAGGCATGGATGTGCTCAAGAATCTCAAGAACGAGTATCGA
TTGAAGGTGGGTTTGGAACCCATCACCGAGGACACGCTGGAGGTTACCAA
GTGCATGCGAGCCAGCTCACCGCCGGCCACAGCTACTGATATACTGGAGA
ACCAGTATCCCAAGCGGAACTTCAAACGCTCCCTGATGAAGCAGCGTTTT
TTGGACGAGCCCGAGCAGATAGACATGGAGATGGGCGGCAACGAGGGTCA
AAATAATGCCAACAATGGCAGCGGCAATGGCGGAAACGGGGAGGAGGAAC
TCTCTCAGTACTACAGACCCTACGATGACCCCTCTTCGTCCGCATCCACC
ACCTCGACGGCAAATCCAAACAACCAGCCTAGCCTAACACAGCCACCCGC
TGCTGTGCCTCCGGTACAGATCACGGCTCGCCTGCCCTGGACGCCCAAGG
TGCGACAAAAGGACATTGACCAGTTTCTGGACATTTCGCGGAATAAGTTC
ATCGGGTATTCGCTGATTGGTGACCACGAGAGTCTGGCTGGACTGCCGCA
ACCCATTCACGAGGGCTTTAAGACGCTGCAGCGGCACATGTATATGAGCC
TGGCCGATGTGCAAATCAAGAAGGAGGAGGACATAGCTAGGAACCCCATT
TCCACACACGAAGACGAAATCAAACTGACCCCGGCTGAGGTGTTGTACCA
AGCCATCCTGCCAAACCTGCCGCAGTATATGATCGCCCTCCTTAAGGTCC
TGCTGGCAGCTTCGCCAACGTCCAAGTCCAAGACGGAGAGCATTAACATA
ATGGCCGATGTGCTGCCTAGGAAGATGCCGCTGACGGCCACCCAATCAAC
AAAGCTAACCGTCGACATTGGTCGGCACAAGGAGATCATTGTGAAGGCTG
TCTCGGCCATCATCCTGCTATATTTAAAGCATTTCAAGATAAACCATGTT
TACCAGTTTGAGTTCATGTCGCAGCATCTCGTGTTCGCCAACTGCATCCC
GCTGGTTTTGAAGTTCTTCAATCAGACAATCACGGAGTACGTGAACACCA
AGAACTCCATTCCTCTGCTCGATTTCCCGTCGTGTGTGATTGGTGAGCAA
CCGGATTTGAGTGGCGATAGCTTTGTGTATGGCGGAGAGATGTCCGATAA
GTCCTACTCTTGGCGGAACGTGTTCTCCTGCATAAACCTGCTGCGCATCC
TCAACAAGCTGATCAAGTGGAAGCACTCGCGAGTGATGATGCTGGTGGTA
TTCAAGTCGGCACCAATCCTGAAGAAGACGCTTAAGGTGCGCCACGCCAT
GATGCAGCTGTACGTGCTGAAGCTGCTCAAGATGCAGACCAAGTACTTGG
GCCGCCAGTGGCGGAAGTCCAATATGAAGACCATGAGTGCAATTTACGCC
AAGGTGCGGCATCGTCTAAACGACGATTGGGCCTTTGGCAACGACTTGGA
GTCGCGTCCCTGGGACTTCCAGGCGGAGGAGTGTACGCTGCGGGCCTGCG
TGGATCGATTCAACCTGCGACGCTATCCGGAAGCCACCCAGAAGTGTGGA
AACAACGGCACGGCAGCTCAGAATGCGGAGAACGCCCAGCAATCCAACAT
GATGGCGGGCAACAATGGATGTGGCAATAATGGCGACGCAAATGGCTATG
GAAACAACGGTGGCGGTGGCAATGGCGGCCACAACCAGCAGCAGCAGCTC
AACGACTATGGTGTGGAGGGTGGCTTTCCCAGCGACGAGATCCTTACCCA
CTCGGACTTTGCCTTCTTCGGTCACTCGGGTTGGTGGGATCGCAAGGTCG
AGCTGACGGATTACTTCAAGGCCAATTACGCGGTCTGGCTGGAGGAGGAG
GTCTACAACAGTCAGACCGACTGGGACGCCCTCTAGGGCAGGGCTGCCAT
CGCTGCTCTAATATCCACATGCGCGTCATAAAAGCAAGAAGTTATTAACG
TAATTGTAAGCATTAAGAAGTACATTGATATAATCCATGTAGCCCGACCA
CGATTGAAACACCAACTACTCACTGAATTGGCAATAATTTGGCAAGCCAC
GGGCCTCCGCTGCGCTCCTCTTCACTAACTAGCATACGCGAATACCATAC
CCATAGCGATGACAAGCCTGTATATGTAATGATTGTATTTTTTAATTTAT
ATATTTATTATTTTACCTGTTCTGCGAGCCCTTGAAACGGATCGCGGCAA
TCGGCTTCTGTAGCGGAATAAACAAATTTGCTAGTTCGAAAACGAAAACA
AAAAAAAAAAAAAAAAA

AT25231.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11526-RB 3377 CG11526-RB 217..3361 1..3145 15560 99.6 Plus
CG11526-RA 3596 CG11526-RA 608..3580 173..3145 14700 99.6 Plus
CG11526-RA 3596 CG11526-RA 1..173 1..173 865 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3322320..3324046 2802..1076 8470 99.4 Minus
chr3L 24539361 chr3L 3324110..3325012 1075..173 4455 99.6 Minus
chr3L 24539361 chr3L 3321910..3322253 3145..2802 1705 99.7 Minus
chr3L 24539361 chr3L 3328105..3328207 174..72 515 100 Minus
chr3L 24539361 chr3L 3328230..3328302 73..1 350 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3322910..3324636 2802..1076 8470 99.4 Minus
3L 28110227 3L 3324700..3325602 1075..173 4515 100 Minus
3L 28110227 3L 3322500..3322843 3145..2802 1720 100 Minus
3L 28110227 3L 3328698..3328871 174..1 870 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3322910..3324636 2802..1076 8470 99.3 Minus
3L 28103327 3L 3324700..3325602 1075..173 4515 100 Minus
3L 28103327 3L 3322500..3322843 3145..2802 1720 100 Minus
3L 28103327 3L 3328698..3328871 174..1 870 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:06:01 has no hits.

AT25231.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:06:39 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3322320..3324046 1076..2802 99 <- Minus
chr3L 3324110..3325011 174..1075 99 <- Minus
chr3L 3328106..3328210 69..173 97 <- Minus
chr3L 3328235..3328302 1..68 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:21:07 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..2784 3..2786 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:51:58 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..2784 3..2786 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:24:57 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..2784 3..2786 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:04 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..2784 3..2786 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:15:47 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
Strip-RB 1..2784 3..2786 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:05:47 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..3148 1..3149 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:51:58 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..3148 1..3149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:57 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..3148 1..3149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:04 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
CG11526-RB 1..3148 1..3149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:15:47 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
Strip-RB 1..3148 1..3149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:39 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322497..3322842 2803..3149 99 <- Minus
3L 3322910..3324636 1076..2802 99 <- Minus
3L 3324700..3325601 174..1075 100 <- Minus
3L 3328699..3328871 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:39 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322497..3322842 2803..3149 99 <- Minus
3L 3322910..3324636 1076..2802 99 <- Minus
3L 3324700..3325601 174..1075 100 <- Minus
3L 3328699..3328871 1..173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:06:39 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322497..3322842 2803..3149 99 <- Minus
3L 3322910..3324636 1076..2802 99 <- Minus
3L 3324700..3325601 174..1075 100 <- Minus
3L 3328699..3328871 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:57 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3322497..3322842 2803..3149 99 <- Minus
arm_3L 3322910..3324636 1076..2802 99 <- Minus
arm_3L 3324700..3325601 174..1075 100 <- Minus
arm_3L 3328699..3328871 1..173 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:13:52 Download gff for AT25231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3322497..3322842 2803..3149 99 <- Minus
3L 3322910..3324636 1076..2802 99 <- Minus
3L 3324700..3325601 174..1075 100 <- Minus
3L 3328699..3328871 1..173 100   Minus

AT25231.hyp Sequence

Translation from 2 to 2785

> AT25231.hyp
MAWKQKNKLLFDTCKNQLSCGAVNARSSMMQSIQSRINVLNTIAASSKRI
ERASVDTDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFSEFQMN
VKAFEDQMELYDLPPNWQKQDSASQRGIVMKLVDQLEVSDRSFRMQAARC
ILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFIDLLNMEIESAC
SPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDYRELAD
SFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLWKVSLL
GLGGMDVLKNLKNEYRLKVGLEPITEDTLEVTKCMRASSPPATATDILEN
QYPKRNFKRSLMKQRFLDEPEQIDMEMGGNEGQNNANNGSGNGGNGEEEL
SQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPVQITARLPWTPKV
RQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRHMYMSL
ADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIALLKVL
LAASPTSKSKTESINIMADVLPRKMPLTATQSTKLTVDIGRHKEIIVKAV
SAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFFNQTITEYVNTK
NSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCINLLRIL
NKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQTKYLG
RQWRKSNMKTMSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECTLRACV
DRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYG
NNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWWDRKVE
LTDYFKANYAVWLEEEVYNSQTDWDAL*

AT25231.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
Strip-PB 927 CG11526-PB 1..927 1..927 4849 100 Plus
Strip-PC 882 CG11526-PC 9..882 54..927 4570 99.7 Plus
Strip-PA 882 CG11526-PA 9..882 54..927 4570 99.7 Plus

AT25231.pep Sequence

Translation from 2 to 2785

> AT25231.pep
MAWKQKNKLLFDTCKNQLSCGAVNARSSMMQSIQSRINVLNTIAASSKRI
ERASVDTDTHDADANCDGPDLDFVYADVDGYQNEIAELYSYTEFSEFQMN
VKAFEDQMELYDLPPNWQKQDSASQRGIVMKLVDQLEVSDRSFRMQAARC
ILYLAQGCWAEVQSDEEQHQITRDNVLVLYQLGVFASFIDLLNMEIESAC
SPDIVAVKITNVTLVDSTDIRVILSVLYIITETIRDEKEKGSEDYRELAD
SFVQEINSPLPDGELLAVKLLGMITRFCSGAAPQFPMKKVVLLLWKVSLL
GLGGMDVLKNLKNEYRLKVGLEPITEDTLEVTKCMRASSPPATATDILEN
QYPKRNFKRSLMKQRFLDEPEQIDMEMGGNEGQNNANNGSGNGGNGEEEL
SQYYRPYDDPSSSASTTSTANPNNQPSLTQPPAAVPPVQITARLPWTPKV
RQKDIDQFLDISRNKFIGYSLIGDHESLAGLPQPIHEGFKTLQRHMYMSL
ADVQIKKEEDIARNPISTHEDEIKLTPAEVLYQAILPNLPQYMIALLKVL
LAASPTSKSKTESINIMADVLPRKMPLTATQSTKLTVDIGRHKEIIVKAV
SAIILLYLKHFKINHVYQFEFMSQHLVFANCIPLVLKFFNQTITEYVNTK
NSIPLLDFPSCVIGEQPDLSGDSFVYGGEMSDKSYSWRNVFSCINLLRIL
NKLIKWKHSRVMMLVVFKSAPILKKTLKVRHAMMQLYVLKLLKMQTKYLG
RQWRKSNMKTMSAIYAKVRHRLNDDWAFGNDLESRPWDFQAEECTLRACV
DRFNLRRYPEATQKCGNNGTAAQNAENAQQSNMMAGNNGCGNNGDANGYG
NNGGGGNGGHNQQQQLNDYGVEGGFPSDEILTHSDFAFFGHSGWWDRKVE
LTDYFKANYAVWLEEEVYNSQTDWDAL*

AT25231.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23912-PA 889 GF23912-PA 9..889 54..927 4261 93.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14265-PA 882 GG14265-PA 9..882 54..927 4708 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:30:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15524-PA 923 GH15524-PA 9..923 54..927 4225 88.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Strip-PB 927 CG11526-PB 1..927 1..927 4849 100 Plus
Strip-PC 882 CG11526-PC 9..882 54..927 4570 99.7 Plus
Strip-PA 882 CG11526-PA 9..882 54..927 4570 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16801-PA 903 GI16801-PA 9..903 54..927 4221 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:30:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16094-PA 892 GL16094-PA 9..892 54..927 4074 89 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11051-PA 898 GA11051-PA 9..898 54..927 4122 90.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:30:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14058-PA 935 GM14058-PA 1..935 1..927 4936 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13333-PA 361 GD13333-PA 1..361 567..927 1983 99.4 Plus
Dsim\GD13332-PA 286 GD13332-PA 1..283 1..275 1377 92.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12546-PA 907 GJ12546-PA 9..907 54..927 4277 89.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:30:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20380-PA 907 GK20380-PA 9..907 54..927 4129 89.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20691-PA 913 GE20691-PA 11..913 25..927 4835 98.3 Plus