Clone AT25352 Report

Search the DGRC for AT25352

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:253
Well:52
Vector:pOTB7
Associated Gene/TranscriptCG6744-RA
Protein status:AT25352.pep: gold
Preliminary Size:1980
Sequenced Size:3165

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6744 2002-01-01 Sim4 clustering to Release 2
CG6744 2002-01-18 Blastp of sequenced clone
CG6719 2003-01-01 Sim4 clustering to Release 3
CG6744 2008-04-29 Release 5.5 accounting
CG4291 2008-08-15 Release 5.9 accounting
CG6744 2008-08-15 Release 5.9 accounting
ia2 2008-08-15 Release 5.9 accounting
CG6744 2008-12-18 5.12 accounting
CG4291 2008-12-18 5.12 accounting
ia2 2008-12-18 5.12 accounting

Clone Sequence Records

AT25352.complete Sequence

3165 bp (3165 high quality bases) assembled on 2002-01-18

GenBank Submission: AY089433

> AT25352.complete
TTTTGGCATAGCACATTCAAATTACGGTTATAAATATTCCGAAACTTGTT
TAGACCGGCTTTTACGGTTTGTGAAAACGTAAGTTGGCAGGCCAGCCAAT
CAGCTGCTGAACTCCGAAAGGAGAACAATGACTCGGGAATCGGCAGTCGC
CACCAAAAGAAATTGGGCGATTCTGGCCGCAGGAGTTGGCTTGGTATACG
TCCTGGTGCGGCACAGGCACCGACTGCTGTGTCCACTGCGTCGCGTCTGG
TCCTTCGGCAGCCTGGTGCCCCAGCGACGCATAGAAGTGATCAACTCCGT
CCAGGATCCGACCACGCAATGGGTTTTGAATGAACTGAAGAATCACTGCC
AGACTTTTAAAGTCCTTGGATTCGATTGCGAGTGGATCACCGTGGGCGGC
AGCCGCAGGCCAGTGGCCTTGCTCCAATTGAGCTCCCATCGGGGTCTATG
TGCCTTATTCCGACTGTGCCATATGAAACAAATACCCCAGGATCTGCGGG
AGCTTCTCGAGGACGATTCCGTGATCAAAGTGGGCGTGGCACCCCAGGAG
GATGCCATGAAACTTTCGCACGACTATGGAGTAGGCGTGGCCAGCACACT
GGATCTGCGCTTCCTCTGCGTAATGGCAGGCCACAAACCTGAGGGACTGG
GAAAGCTCTCCAAAACTCACCTGAACTATACACTGGACAAGCACTGGCGC
CTGGCCTGCTCCAACTGGGAGGCCAAGACTTTGGAGCCAAAACAGCTTGA
TTACGCTGCCAACGACGCACTTATGGCGGTGGCCATTTATCAAAAATTGT
GCAGGGATCTGCAGCCAAAACACTTTTGGCAACGAAGGCAACTGGACGAC
AATAGCATGCACAACAAATTCGAACCCTTTCTCGACGTGGACTTCACGAA
AGGCTTCACACTCAACCCGTCCGGCAGCGGAGTAACTCGTTCAAAGGGCT
CCACCCAATCCAAAAGCAATAAATGGGTGCCCAAGAAGCAACCGTACCGG
CAAATAGCTACCCGAACCAAAGACTTCTACGATAACTGCCTGCTGCAGGC
GCCCGATGGCGAACTCCTGTGTACAATTGACAGGCGCAAGGCGTCCTGGT
ATCTCAATCAAAATCTGGGCACGCATATAAGCGAAGAGCCCTTCACTGTC
CGCCTTAACTTCGAGCCAGCGGGTCGAGCGGTCGGAGATGTGGGGCGCTT
CTATCAAACAATCAAGAAAAACCAGTGCGTGGTGTGTGGTGACCGGGATG
CGTACATTCGGAAGAACGTGGTACCGCGGGAATACAGAAAGCATTTCCCA
TTGGTCATGAAATCTCACACCTCCGACGATGTGCTGCTCCTGTGCCCAAC
CTGCCACCAGCTAAGCAACATCTCGGATCTAAGGGTTCGCAGCAAACTGG
CCGTGCAGTGCGAAGCTCCTTTCAAGCAGGAAGACGGATCTGTCAAGTAC
CATGATGATCCGCAGCTCAAACGAGTCCAATCCGCTGGCAAGGCACTACT
TCATCATGGCGCGAAAATACCCGCTGCAAAGAAGGCCGAAATGGAAAAGA
CTCTCCTCGATTACTACTCCGATCAAACGGACATCACAGAAGATCTCCTG
CGGCAAGCAGCCAGCGTGGAATATCGCGTAGAAAACTCCGACTACTGTCA
GCATGGCGAGCGGGTGGTGCAGCAATATCGCGATCATTTCGGCGGCCTGG
TGGAGCTGGAGCGCTTATGGCGGCAGCACTTTCTGCACACAATGCAGCCC
CGCTTTTTGCCCGAACTCTGGAATGTCAACCACAATGCCGATCGACTGGA
AGTTCGCGCCAGCGAGGGTCGCATCGATAAAGCCGATCTTATGGTGGCCG
GATTGGATGCGAAGATTAAAGAAACGTGATGCAGGGCTTTTCTGAGTTTG
CCACCGGCTTTGTACGTTTTATATTTCAATTTTAATAAAAATAAACTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCT
CTAACATGACGGAGTACTGGAAATCAAACGAGCGCAAGTTCTGCGACTTC
TGCAAATGCTGGCTGAGCGACAACAAGGCGAGCGTCGCCTTCCACGAGAG
TGGCAAGCGGCACAAGATGAATGTGGCCAAGCGGATCACGGACATCAGTC
GCAACAGCGAGAAATCGGAGCGGGAGCGCCAGAAAATGGACGCGGAGATC
CGCAAGATGGAGGAGGCGGCCATGAAGTCGTACGCACAGGATGTCCATTC
GCGCGGTGACATGACCGCCAGGTCCATTAACACGGTAATGAGGGCCACCG
CCTCTGCTGCCGCCTCAAGCGGAGCTCACTCCTTCGCCGGAAGATCACGC
CAAGTGGACCCCATGCGCCTGGAAGGATTGTCCGACGAAGAAGAAGACCA
GAGGCGGGTGGCTCCCGGCAAGGTAACAAGCGACGCAGCCGTGCCCGAGG
CATCCCTCTGGGTGGAGGGCAAGTCGGACGAGGGACACACCTACTATTGG
AACGTGAAGACCAATGAATCCGTGTGGAAGCCGCCGAAAGAGGGCTATCT
GTCCTACGAGGAGTACGAGCGCATCAACCAGCTGGCCATCGACCAGCAGC
AGATCTCCCAGGCCGAGGAATCGCTGAAATTCCGCGCCAATGTCGACGAG
GAAGTGGCGAGGGTGAACCGAGAGAAGATGAAAGCCTTCCGCAGGACGGA
CAATCCCAAGGAAAAGAAGCAGAAGGAGGAGAGGCGTCAGACATTCAAAA
CGGAGGAAGAGGCGGCCACCAAAGAGATTGGACAGTGGCAAACTGTGGAA
GTGAAAGCACCTGAGCAGCCCATCGACTGGCAGCTACCCAAAACGGATTA
CTACAGTGCTGCGCCCGTGGTTTCCGCCTCGAGTGAACCAGAACCTCCAG
TCAAAAAGTTCAAGGAGAAGACGATTGGCGGTCTGGATGAGGAGATAGCC
GCCACTGCGCCCGCCACGTTCAAGCGGAAATTCATCAGGAAGGGAAACAG
CCGCCAGCGCGCCGAGGATTAAGAAGTACTCCATGTGCTTATGTGCATAT
TTCACCTACTAGTTAGGTTTAGGCATAGGAAATGTTTAGGTTTTTAAGTG
TTTGCTTATACCAATTAAAAAGTGAGATGCGTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

AT25352.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6744-RA 1967 CG6744-RA 2..1952 1..1951 9755 100 Plus
CG6744.a 1981 CG6744.a 2..1912 1..1911 9555 100 Plus
CG4291-RA 1333 CG4291-RA 127..1258 2005..3136 5600 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7259642..7260769 1470..343 5640 100 Minus
chr2L 23010047 chr2L 851604..852329 2805..2080 3600 99.7 Minus
chr3R 27901430 chr3R 7258954..7259434 1951..1471 2405 100 Minus
chr3R 27901430 chr3R 7260832..7261173 342..1 1710 100 Minus
chr2L 23010047 chr2L 851217..851545 3134..2806 1645 100 Minus
chr2L 23010047 chr2L 852385..852462 2080..2003 375 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11434172..11435299 1470..343 5640 100 Minus
2L 23513712 2L 851718..852443 2805..2080 3600 99.7 Minus
3R 32079331 3R 11433484..11433964 1951..1471 2405 100 Minus
3R 32079331 3R 11435362..11435703 342..1 1710 100 Minus
2L 23513712 2L 851329..851659 3136..2806 1625 99.4 Minus
2L 23513712 2L 852499..852576 2080..2003 375 98.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11175003..11176130 1470..343 5640 100 Minus
2L 23513712 2L 851718..852443 2805..2080 3600 99.7 Minus
3R 31820162 3R 11174315..11174795 1951..1471 2405 100 Minus
3R 31820162 3R 11176193..11176534 342..1 1710 100 Minus
2L 23513712 2L 851329..851659 3136..2806 1625 99.3 Minus
2L 23513712 2L 852499..852576 2080..2003 375 98.7 Minus
Blast to na_te.dros performed 2019-03-16 12:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 435..490 1915..1971 120 70.2 Plus

AT25352.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:42:10 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7258989..7259434 1471..1916 100 <- Minus
chr3R 7259642..7260769 343..1470 100 <- Minus
chr3R 7260832..7261173 1..342 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:07:16 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1752 128..1879 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:46:07 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1752 128..1879 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:53:17 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1752 128..1879 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:14:30 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1752 128..1879 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:51:11 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1752 128..1879 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:15 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1947 1..1947 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:46:07 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1947 1..1947 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:53:17 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1947 1..1947 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:14:30 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1947 1..1947 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:51:11 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
CG6744-RA 1..1947 1..1947 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:10 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11433484..11433964 1471..1951 100 <- Minus
3R 11434172..11435299 343..1470 100 <- Minus
3R 11435362..11435703 1..342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:10 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11433484..11433964 1471..1951 100 <- Minus
3R 11434172..11435299 343..1470 100 <- Minus
3R 11435362..11435703 1..342 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:42:10 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11433484..11433964 1471..1951 100 <- Minus
3R 11434172..11435299 343..1470 100 <- Minus
3R 11435362..11435703 1..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:53:17 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7259206..7259686 1471..1951 100 <- Minus
arm_3R 7259894..7261021 343..1470 100 <- Minus
arm_3R 7261084..7261425 1..342 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:48:13 Download gff for AT25352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11174315..11174795 1471..1951 100 <- Minus
3R 11175003..11176130 343..1470 100 <- Minus
3R 11176193..11176534 1..342 100   Minus

AT25352.pep Sequence

Translation from 127 to 1878

> AT25352.pep
MTRESAVATKRNWAILAAGVGLVYVLVRHRHRLLCPLRRVWSFGSLVPQR
RIEVINSVQDPTTQWVLNELKNHCQTFKVLGFDCEWITVGGSRRPVALLQ
LSSHRGLCALFRLCHMKQIPQDLRELLEDDSVIKVGVAPQEDAMKLSHDY
GVGVASTLDLRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAK
TLEPKQLDYAANDALMAVAIYQKLCRDLQPKHFWQRRQLDDNSMHNKFEP
FLDVDFTKGFTLNPSGSGVTRSKGSTQSKSNKWVPKKQPYRQIATRTKDF
YDNCLLQAPDGELLCTIDRRKASWYLNQNLGTHISEEPFTVRLNFEPAGR
AVGDVGRFYQTIKKNQCVVCGDRDAYIRKNVVPREYRKHFPLVMKSHTSD
DVLLLCPTCHQLSNISDLRVRSKLAVQCEAPFKQEDGSVKYHDDPQLKRV
QSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDITEDLLRQAASVEYR
VENSDYCQHGERVVQQYRDHFGGLVELERLWRQHFLHTMQPRFLPELWNV
NHNADRLEVRASEGRIDKADLMVAGLDAKIKET*

AT25352.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18156-PA 586 GF18156-PA 1..584 1..581 2498 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17221-PA 579 GG17221-PA 1..578 1..582 2775 89 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15379-PA 591 GH15379-PA 1..582 1..580 1992 65.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Exd2-PB 583 CG6744-PB 1..583 1..583 3109 100 Plus
Exd2-PA 583 CG6744-PA 1..583 1..583 3109 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22458-PA 595 GI22458-PA 1..587 1..580 1993 66.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12271-PA 578 GL12271-PA 2..574 6..579 2201 71.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19827-PA 578 GA19827-PA 2..574 6..579 2199 71.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26098-PA 583 GM26098-PA 1..583 1..583 3042 96.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20659-PA 541 GD20659-PA 1..541 1..583 2763 89.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10057-PA 591 GJ10057-PA 1..581 1..578 2061 67.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11793-PA 598 GK11793-PA 5..586 8..579 2148 70.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24622-PA 583 GE24622-PA 1..582 1..582 2902 91.4 Plus

AT25352.hyp Sequence

Translation from 127 to 1878

> AT25352.hyp
MTRESAVATKRNWAILAAGVGLVYVLVRHRHRLLCPLRRVWSFGSLVPQR
RIEVINSVQDPTTQWVLNELKNHCQTFKVLGFDCEWITVGGSRRPVALLQ
LSSHRGLCALFRLCHMKQIPQDLRELLEDDSVIKVGVAPQEDAMKLSHDY
GVGVASTLDLRFLCVMAGHKPEGLGKLSKTHLNYTLDKHWRLACSNWEAK
TLEPKQLDYAANDALMAVAIYQKLCRDLQPKHFWQRRQLDDNSMHNKFEP
FLDVDFTKGFTLNPSGSGVTRSKGSTQSKSNKWVPKKQPYRQIATRTKDF
YDNCLLQAPDGELLCTIDRRKASWYLNQNLGTHISEEPFTVRLNFEPAGR
AVGDVGRFYQTIKKNQCVVCGDRDAYIRKNVVPREYRKHFPLVMKSHTSD
DVLLLCPTCHQLSNISDLRVRSKLAVQCEAPFKQEDGSVKYHDDPQLKRV
QSAGKALLHHGAKIPAAKKAEMEKTLLDYYSDQTDITEDLLRQAASVEYR
VENSDYCQHGERVVQQYRDHFGGLVELERLWRQHFLHTMQPRFLPELWNV
NHNADRLEVRASEGRIDKADLMVAGLDAKIKET*

AT25352.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6744-PB 583 CG6744-PB 1..583 1..583 3109 100 Plus
CG6744-PA 583 CG6744-PA 1..583 1..583 3109 100 Plus