Clone AT25367 Report

Search the DGRC for AT25367

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:253
Well:67
Vector:pOTB7
Associated Gene/TranscriptHex-t2-RA
Protein status:AT25367.pep: gold
Sequenced Size:1589

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Hex-t2-RA 2009-06-22 Replacement based on scoring

Clone Sequence Records

AT25367.complete Sequence

1589 bp assembled on 2009-07-30

GenBank Submission: BT088988.1

> AT25367.complete
GAAATTTACCTCATGAGAAAGTCAACTAGACTTTTAACTCATTCTCTATT
CGGCCCTGTATTTAAAATTTTGTTTCATAACAAAACAGTTTGTGGAGGCT
GTAATAGGAAAATGCCGAGCCTGGTGAACACGGAAATTGAAGCCGCGGTC
AAGGGCTTCCTGATCGACCAGGAGAAGATGACCGAGGTGGTGGAGCGCAT
GACCAAGGAGATAAAGATGGGCCTGGCCAAGGACACGCATGCACGAGCGG
TGATCAAGTGCTTCGTCAGCCATGTGCAAGATCTGCCCACTGGCAAGGAG
CGGGGAAAGTATTTGGCCCTGGATCTGGGTGGCTCTAATTTCAGGGTGCT
TCTGGTGAACCTGATTAGCAACTCGGACGTGGAAACCATGTCGAAGGGCT
ATAATTTTCCTCAAACTCTGATGTCCGGATCGGGAAAGGCGCTTTTCGAC
TTCCTTGCCGAATGCCTGTCGGAGTTTTGTCACTCCCATGGCCTGGAGAA
TGAATCACTGGCTCTGGGCTTCACCTTCTCGTTTCCGCTCCAGCAGCAGG
GACTCTCCAAGGGTATCCTTGTGGCCTGGACCAAAGGATTCAGCTGCGAA
GGCGTGGTGGGCAAGAATGTGGTGAGTCTTCTCCAGGAGGCAATCGATCG
AAGGGGCGATCTAAAGATCAATACCGTCGCCATTCTCAACGATACGGTGG
GCACTCTGATGTCCTGCGCCTTCTATCATCCCAACTGCCGGATTGGATTG
ATCGTGGGAACCGGCTCCAATGCGTGCTATGTGGAGAAAACAGTAAATGC
CGAATGCTTCGAAGGATACCAGACCAGTCCCAAGCCATCAATGATAATCA
ACTGCGAGTGGGGCGCCTTTGGGGACAATGGTGTCCTGGAGTTCGTTCGA
ACTTCCTACGACAAGGCAGTCGACAAGGTAACACCCAATCCCGGCAAGCA
GACGTTCGAAAAGTGCATATCGGGCATGTATATGGGTGAACTTGTACGTT
TGGTCATCACCGATATGATTGCCAAGGGTTTTATGTTCCACGGCATCATT
TCCGAGAAGATCCAGGAGCGATGGAGCTTCAAAACCGCCTATATTTCCGA
TGTTGAAAGTGATGCACCTGGCGAGTATCGCAATTGCAATAAGGTCCTTA
GCGAATTGGGCATCTTGGGCTGCCAGGAACCCGACAAAGAGGCCCTGCGA
TACATCTGCGAGGCGGTGTCCTCCAGGTCTGCCAAGCTATGTGCCTGCGG
CCTGGTCACCATCATCAACAAGATGAACATCAACGAGGTGGCCATCGGCA
TAGACGGTAGCGTGTATCGCTTCCATCCCAAGTACCACGACATGCTCCAG
TACCACATGAAGAAGCTCCTCAAGCCGGGCGTCAAGTTTGAGCTGGTTGT
TTCGGAGGACGGATCCGGAAGAGGAGCAGCTCTCGTGGCGGCCACCGCAG
TCCAGGCCAAAAGCAAGCTCTAAATTCGAAGTTGATATTCTTCAAATGCA
TGGGAAACGTTACGGACAATGATATATGAGCACAAAATTATGGAAGAAGA
AATAAAGATTTAAGGATATAAAAAAAAAAAAAAAAAAAA

AT25367.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-t2.a 3275 Hex-t2.a 1602..3172 1..1571 7795 99.7 Plus
Hex-t2-RA 1697 Hex-t2-RA 24..1594 1..1571 7795 99.7 Plus
Hex-A.a 2520 Hex-A.a 735..831 254..350 245 83.5 Plus
Hex-A.a 2520 Hex-A.a 1414..1482 936..1004 195 85.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22274405..22275353 621..1569 4730 99.9 Plus
chr3R 27901430 chr3R 22273697..22274323 1..627 3045 99 Plus
chrX 22417052 chrX 9478300..9478430 220..350 250 79.4 Plus
chrX 22417052 chrX 9479013..9479081 936..1004 195 85.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26451379..26452329 621..1571 4695 99.6 Plus
3R 32079331 3R 26450671..26451297 1..627 3135 100 Plus
X 23542271 X 9586585..9586715 220..350 250 79.4 Plus
X 23542271 X 9587298..9587366 936..1004 195 85.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26192210..26193160 621..1571 4695 99.5 Plus
3R 31820162 3R 26191502..26192128 1..627 3135 100 Plus
X 23527363 X 9594717..9594813 254..350 245 83.5 Plus
X 23527363 X 9595396..9595464 936..1004 195 85.5 Plus
Blast to na_te.dros performed on 2019-03-16 21:03:25 has no hits.

AT25367.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:04:03 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22273697..22274317 1..621 99 -> Plus
chr3R 22274406..22275353 622..1569 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:27 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 1..1461 13..1473 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:53:28 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 1..1461 13..1473 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:16:33 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 1..1461 13..1473 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:55 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 1..1461 13..1473 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-30 17:21:50 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 20..1588 1..1569 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:53:28 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 20..1588 1..1569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:16:33 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 20..1588 1..1569 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:55 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
Hex-t2-RA 1..1569 1..1569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:04:03 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26450671..26451291 1..621 100 -> Plus
3R 26451380..26452327 622..1569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:04:03 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26450671..26451291 1..621 100 -> Plus
3R 26451380..26452327 622..1569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:04:03 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26450671..26451291 1..621 100 -> Plus
3R 26451380..26452327 622..1569 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:16:33 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22276393..22277013 1..621 100 -> Plus
arm_3R 22277102..22278049 622..1569 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:44:22 Download gff for AT25367.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26191502..26192122 1..621 100 -> Plus
3R 26192211..26193158 622..1569 99   Plus

AT25367.hyp Sequence

Translation from 0 to 1472

> AT25367.hyp
EIYLMRKSTRLLTHSLFGPVFKILFHNKTVCGGCNRKMPSLVNTEIEAAV
KGFLIDQEKMTEVVERMTKEIKMGLAKDTHARAVIKCFVSHVQDLPTGKE
RGKYLALDLGGSNFRVLLVNLISNSDVETMSKGYNFPQTLMSGSGKALFD
FLAECLSEFCHSHGLENESLALGFTFSFPLQQQGLSKGILVAWTKGFSCE
GVVGKNVVSLLQEAIDRRGDLKINTVAILNDTVGTLMSCAFYHPNCRIGL
IVGTGSNACYVEKTVNAECFEGYQTSPKPSMIINCEWGAFGDNGVLEFVR
TSYDKAVDKVTPNPGKQTFEKCISGMYMGELVRLVITDMIAKGFMFHGII
SEKIQERWSFKTAYISDVESDAPGEYRNCNKVLSELGILGCQEPDKEALR
YICEAVSSRSAKLCACGLVTIINKMNINEVAIGIDGSVYRFHPKYHDMLQ
YHMKKLLKPGVKFELVVSEDGSGRGAALVAATAVQAKSKL*

AT25367.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-t2-PA 486 CG32849-PA 1..486 5..490 2533 100 Plus
Hex-A-PC 448 CG3001-PC 10..438 54..483 1283 56.5 Plus
Hex-A-PB 448 CG3001-PB 10..438 54..483 1283 56.5 Plus
Hex-A-PA 541 CG3001-PA 103..531 54..483 1283 56.5 Plus
Hex-C-PA 454 CG8094-PA 1..454 41..487 1046 46.5 Plus

AT25367.pep Sequence

Translation from 0 to 1472

> AT25367.pep
EIYLMRKSTRLLTHSLFGPVFKILFHNKTVCGGCNRKMPSLVNTEIEAAV
KGFLIDQEKMTEVVERMTKEIKMGLAKDTHARAVIKCFVSHVQDLPTGKE
RGKYLALDLGGSNFRVLLVNLISNSDVETMSKGYNFPQTLMSGSGKALFD
FLAECLSEFCHSHGLENESLALGFTFSFPLQQQGLSKGILVAWTKGFSCE
GVVGKNVVSLLQEAIDRRGDLKINTVAILNDTVGTLMSCAFYHPNCRIGL
IVGTGSNACYVEKTVNAECFEGYQTSPKPSMIINCEWGAFGDNGVLEFVR
TSYDKAVDKVTPNPGKQTFEKCISGMYMGELVRLVITDMIAKGFMFHGII
SEKIQERWSFKTAYISDVESDAPGEYRNCNKVLSELGILGCQEPDKEALR
YICEAVSSRSAKLCACGLVTIINKMNINEVAIGIDGSVYRFHPKYHDMLQ
YHMKKLLKPGVKFELVVSEDGSGRGAALVAATAVQAKSKL*

AT25367.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20727-PA 447 GF20727-PA 1..447 41..487 1803 75.6 Plus
Dana\GF22320-PA 539 GF22320-PA 99..529 53..483 1342 56.8 Plus
Dana\GF12622-PA 454 GF12622-PA 1..454 41..487 1044 46.5 Plus
Dana\GF20735-PA 469 GF20735-PA 17..459 45..489 871 36.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11478-PA 453 GG11478-PA 1..453 38..490 2228 90.1 Plus
Dere\GG18317-PA 539 GG18317-PA 100..529 53..483 1320 56.4 Plus
Dere\GG22367-PA 454 GG22367-PA 1..454 41..487 1044 46 Plus
Dere\GG11476-PA 465 GG11476-PA 13..455 45..489 897 37.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19419-PA 449 GH19419-PA 14..447 50..483 1517 64.3 Plus
Dgri\GH12375-PA 538 GH12375-PA 100..529 53..483 1340 57.3 Plus
Dgri\GH21465-PA 454 GH21465-PA 1..454 41..487 1106 48.9 Plus
Dgri\GH19418-PA 459 GH19418-PA 6..448 39..483 944 40 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hex-t2-PA 486 CG32849-PA 1..486 5..490 2533 100 Plus
Hex-A-PC 448 CG3001-PC 10..438 54..483 1283 56.5 Plus
Hex-A-PB 448 CG3001-PB 10..438 54..483 1283 56.5 Plus
Hex-A-PA 541 CG3001-PA 103..531 54..483 1283 56.5 Plus
Hex-C-PA 454 CG8094-PA 1..454 41..487 1046 46.5 Plus
Hex-t1-PA 465 CG33102-PA 13..455 45..489 842 36.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22624-PA 451 GI22624-PA 18..450 53..485 1495 64.2 Plus
Dmoj\GI14754-PA 547 GI14754-PA 109..538 53..483 1348 57.8 Plus
Dmoj\GI19942-PA 454 GI19942-PA 1..453 41..486 1072 46.7 Plus
Dmoj\GI22621-PA 454 GI22621-PA 17..454 50..489 988 42.7 Plus
Dmoj\GI22622-PA 458 GI22622-PA 6..452 39..487 985 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21847-PA 456 GL21847-PA 4..451 38..485 1898 75.7 Plus
Dper\GL11018-PA 454 GL11018-PA 1..454 41..487 1092 46.9 Plus
Dper\GL21996-PA 466 GL21996-PA 3..450 18..483 865 35 Plus
Dper\GL15877-PA 397 GL15877-PA 222..387 318..483 485 54.2 Plus
Dper\GL15877-PA 397 GL15877-PA 110..220 53..163 337 55.9 Plus
Dper\GL21460-PA 66 GL21460-PA 1..61 425..485 278 75.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26424-PA 456 GA26424-PA 4..451 38..485 1896 75.4 Plus
Dpse\GA15574-PA 549 GA15574-PA 110..539 53..483 1331 57.3 Plus
Dpse\GA20820-PA 454 GA20820-PA 1..454 41..487 1092 46.9 Plus
Dpse\GA17282-PA 466 GA17282-PA 3..450 18..483 862 34.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10321-PA 453 GM10321-PA 1..453 38..490 2351 96.7 Plus
Dsec\GM20151-PA 454 GM20151-PA 1..454 41..487 1042 46.1 Plus
Dsec\GM10320-PA 465 GM10320-PA 13..455 45..489 870 36 Plus
Dsec\GM11376-PA 388 GM11376-PA 102..304 53..255 653 59.6 Plus
Dsec\GM11377-PA 155 GM11377-PA 1..147 339..485 403 49.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Hex-t2-PA 453 GD21282-PA 1..453 38..490 2363 97.1 Plus
Dsim\GD25630-PA 454 GD25630-PA 1..454 41..487 1048 46.3 Plus
Dsim\Hex-t1-PA 400 GD21281-PA 13..236 45..268 464 37.9 Plus
Dsim\Hex-t1-PA 400 GD21281-PA 228..390 327..489 266 31.3 Plus
Dsim\GD24777-PA 69 GD24777-PA 1..59 425..483 203 59.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23870-PA 450 GJ23870-PA 18..450 53..485 1448 61.9 Plus
Dvir\GJ23866-PA 451 GJ23866-PA 16..446 51..481 1411 57.8 Plus
Dvir\GJ19157-PA 561 GJ19157-PA 123..552 53..483 1346 57.8 Plus
Dvir\GJ15111-PA 454 GJ15111-PA 1..454 41..487 1080 47.7 Plus
Dvir\GJ23869-PA 458 GJ23869-PA 17..447 51..483 996 41.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18967-PA 460 GK18967-PA 17..439 53..475 1581 66.2 Plus
Dwil\GK19144-PA 471 GK19144-PA 21..467 45..487 1402 58.4 Plus
Dwil\GK16160-PA 535 GK16160-PA 97..526 53..483 1340 57.1 Plus
Dwil\GK21542-PA 454 GK21542-PA 1..454 41..487 1107 47.6 Plus
Dwil\GK13969-PA 468 GK13969-PA 7..448 39..480 966 40 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Hex-t2-PA 453 GE23669-PA 1..453 38..490 2270 91.6 Plus
Dyak\Hex-A-PA 546 GE17799-PA 107..536 53..483 1324 56.4 Plus
Dyak\Hex-C-PA 454 GE12255-PA 1..454 41..487 1053 46.2 Plus
Dyak\Hex-t1-PA 465 GE23668-PA 13..449 45..483 892 37.4 Plus