Clone AT25469 Report

Search the DGRC for AT25469

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:254
Well:69
Vector:pOTB7
Associated Gene/TranscriptalphaTub84B-RA
Protein status:AT25469.pep: gold
Sequenced Size:1758

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1913 2004-03-31 Blastp of sequenced clone
alphaTub84B 2008-04-29 Release 5.5 accounting
alphaTub84B 2008-08-15 Release 5.9 accounting
alphaTub84B 2008-12-18 5.12 accounting

Clone Sequence Records

AT25469.complete Sequence

1758 bp (1758 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012506

> AT25469.complete
CGTTTGTCAAGCCTCATAGCCGGCAGTTCGAACGTATACGCTCTCTGAGT
CAGACCTCGAAATCGTAGCTCTACACAATTCTGTGAATTTTCCTTGTCGC
GTGTGAAACACTTCCAATAAAAACTCAATATGCGTGAATGTATCTCTATC
CATGTTGGTCAGGCTGGTGTCCAGATTGGAAACGCCTGCTGGGAGCTCTA
CTGCTTGGAGCACGGCATCCAGCCCGATGGCCAGATGCCGTCTGACAAGA
CCGTGGGCGGAGGTGATGACTCGTTCAACACCTTCTTCAGCGAGACTGGA
GCTGGCAAGCACGTGCCCCGCGCCGTGTTTGTGGATCTGGAACCCACTGT
GGTCGATGAGGTCCGTACCGGAACCTACCGTCAGCTGTTCCACCCTGAGC
AGCTGATCACTGGTAAGGAGGATGCGGCCAACAACTACGCCCGTGGCCAC
TACACCATCGGCAAGGAGATCGTCGATCTGGTTCTGGACAGGATCCGCAA
GCTGGCCGATCAGTGCACCGGTCTGCAGGGCTTCCTCATCTTCCACTCGT
TCGGTGGAGGTACCGGCTCCGGCTTCACCTCGCTGCTGATGGAGCGTCTC
TCCGTGGACTACGGCAAGAAGTCCAAGCTGGAGTTCGCCATCTACCCAGC
CCCCCAGGTGTCCACTGCCGTGGTCGAGCCCTACAACTCCATCCTGACCA
CCCACACCACCCTGGAGCATTCCGACTGCGCCTTCATGGTCGACAACGAG
GCTATCTACGACATCTGCCGCCGCAACCTGGACATTGAGCGCCCCACGTA
CACCAACCTGAACCGTCTGATTGGCCAGATCGTGTCCTCGATTACCGCCT
CTCTGCGATTCGATGGTGCCCTTAACGTGGATCTGACTGAGTTCCAGACC
AACTTGGTGCCCTACCCACGTATTCACTTCCCTCTGGTGACCTACGCCCC
CGTTATCTCCGCCGAGAAGGCCTACCACGAGCAGCTGTCGGTGGCTGAGA
TCACCAACGCCTGCTTCGAGCCGGCCAACCAGATGGTCAAGTGCGATCCC
CGTCACGGCAAGTACATGGCCTGCTGCATGCTGTACCGCGGTGATGTTGT
GCCCAAGGACGTCAACGCCGCTATTGCCACCATCAAGACCAAGCGCACCA
TTCAATTCGTCGACTGGTGCCCCACTGGCTTCAAGGTTGGCATCAACTAC
CAGCCACCCACCGTGGTGCCTGGAGGTGATTTGGCCAAGGTGCAGCGTGC
CGTGTGCATGTTGTCCAACACCACGGCCATCGCCGAGGCCTGGGCCCGTC
TGGACCACAAGTTCGATCTGATGTACGCCAAGCGTGCCTTCGTCCACTGG
TACGTTGGTGAGGGTATGGAGGAGGGAGAGTTCTCCGAGGCCCGTGAGGA
TTTGGCTGCCCTCGAGAAGGACTACGAGGAGGTCGGCATGGACTCCGGTG
ACGGCGAGGGTGAGGGCGCTGAGGAGTACTAAGCGTCGCGCCACTTCAAC
GCTCGATGGGAGCGTCATTGGTGGGCGGGGTAACCGTCGAAATCAGTGTT
TACGCTTCCAATCGCAACAAAAAATTCACTGCAACACTGAAAAGCATACG
AAAACGATGAAGATTGTACGAGAAACCATAAAGTATTTTATCCACAAAGA
CACGTATAGCAGAAAAGCCAAGTTAACTCGGCGATAAGTTGTGTACACAA
GAATAAAATCGGCCAGATTCAGTGTTGTCAGAAATAAGAAAAAAAAAAAA
AAAAAAAA

AT25469.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTub84B.c 2456 alphaTub84B.c 249..1990 1..1742 8665 99.8 Plus
alphaTub84B.b 2133 alphaTub84B.b 249..1990 1..1742 8665 99.8 Plus
alphaTub84B-RA 2140 alphaTub84B-RA 249..1990 1..1742 8665 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 2913260..2914866 132..1738 7990 99.8 Plus
chr3R 27901430 chr3R 3357325..3358686 120..1481 5220 92.2 Plus
chr3R 27901430 chr3R 5557189..5557979 1446..656 2500 87.7 Minus
chr3R 27901430 chr3R 5558123..5558618 650..155 1565 87.7 Minus
chr3L 24539361 chr3L 9674066..9675112 397..1443 1245 74.6 Plus
chr3R 27901430 chr3R 2912640..2912771 1..132 660 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:54:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7087233..7088843 132..1742 8010 99.8 Plus
3R 32079331 3R 7531249..7532610 120..1481 5220 92.2 Plus
3R 32079331 3R 9731362..9732152 1446..656 2500 87.7 Minus
3R 32079331 3R 9732286..9732781 650..155 1565 87.7 Minus
3L 28110227 3L 9682200..9683246 397..1443 1155 74 Plus
3R 32079331 3R 7086613..7086744 1..132 660 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 6828064..6829674 132..1742 8010 99.8 Plus
3R 31820162 3R 7272080..7273441 120..1481 5220 92.2 Plus
3R 31820162 3R 9472193..9472983 1446..656 2500 87.7 Minus
3R 31820162 3R 9473117..9473612 650..155 1565 87.7 Minus
3R 31820162 3R 6827444..6827575 1..132 660 100 Plus
3L 28103327 3L 9675427..9675664 524..761 455 79.4 Plus
3L 28103327 3L 9675906..9676142 1003..1239 450 79.3 Plus
3L 28103327 3L 9676210..9676346 1307..1443 280 80.2 Plus
3L 28103327 3L 9675711..9675870 808..967 200 75 Plus
3L 28103327 3L 9675300..9675371 397..468 165 81.9 Plus
Blast to na_te.dros performed on 2019-03-16 16:54:54 has no hits.

AT25469.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:55:50 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 2912640..2912771 1..132 100 -> Plus
chr3R 2913261..2914866 133..1738 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:21:25 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 1..1353 130..1482 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:59 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 1..1353 130..1482 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:48:59 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 1..1353 130..1482 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:45 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 1..1353 130..1482 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:47:12 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 1..1353 130..1482 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:47:09 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 76..1813 1..1738 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:59 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 76..1813 1..1738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:48:59 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 15..1752 1..1738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:45 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 76..1813 1..1738 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:47:12 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
alphaTub84B-RA 15..1752 1..1738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:50 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7086613..7086744 1..132 100 -> Plus
3R 7087234..7088839 133..1738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:50 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7086613..7086744 1..132 100 -> Plus
3R 7087234..7088839 133..1738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:55:50 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7086613..7086744 1..132 100 -> Plus
3R 7087234..7088839 133..1738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:48:59 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2912335..2912466 1..132 100 -> Plus
arm_3R 2912956..2914561 133..1738 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:00:09 Download gff for AT25469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6828065..6829670 133..1738 99   Plus
3R 6827444..6827575 1..132 100 -> Plus

AT25469.pep Sequence

Translation from 129 to 1481

> AT25469.pep
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY
*

AT25469.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17649-PA 450 GF17649-PA 1..450 1..450 2439 100 Plus
Dana\GF11529-PA 449 GF11529-PA 1..449 1..450 2262 95.8 Plus
Dana\GF25153-PA 462 GF25153-PA 1..453 1..442 1734 69.1 Plus
Dana\GF16752-PA 452 GF16752-PA 6..451 3..443 1266 52 Plus
Dana\GF12605-PA 447 GF12605-PA 1..424 1..434 903 40.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13808-PA 450 GG13808-PA 1..450 1..450 2439 100 Plus
Dere\GG14119-PA 450 GG14119-PA 1..450 1..450 2428 99.6 Plus
Dere\GG17337-PA 449 GG17337-PA 1..449 1..450 2255 95.3 Plus
Dere\GG15399-PA 462 GG15399-PA 1..457 1..449 1734 69.1 Plus
Dere\GG22615-PA 455 GG22615-PA 6..436 3..435 1269 53.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19001-PA 450 GH19001-PA 1..450 1..450 2439 100 Plus
Dgri\GH22334-PA 455 GH22334-PA 8..454 2..448 2256 95.5 Plus
Dgri\GH16316-PA 460 GH16316-PA 1..450 1..439 1686 68.5 Plus
Dgri\GH15056-PA 449 GH15056-PA 6..449 3..443 1216 52 Plus
Dgri\GH20203-PA 447 GH20203-PA 1..424 1..434 903 40.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTub84B-PA 450 CG1913-PA 1..450 1..450 2392 100 Plus
alphaTub84D-PA 450 CG2512-PA 1..450 1..450 2381 99.6 Plus
alphaTub85E-PA 449 CG9476-PA 1..449 1..450 2283 95.3 Plus
alphaTub67C-PA 462 CG8308-PA 1..456 1..445 1735 69.1 Plus
CG7794-PA 455 CG7794-PA 6..436 3..435 1279 53.6 Plus
betaTub56D-PB 447 CG9277-PB 1..439 1..449 949 40.1 Plus
betaTub97EF-PB 457 CG4869-PB 1..439 1..449 944 39.2 Plus
betaTub85D-PA 446 CG9359-PA 1..439 1..449 932 39.6 Plus
betaTub97EF-PC 457 CG4869-PC 1..439 1..449 932 39 Plus
betaTub60D-PA 454 CG3401-PA 1..439 1..443 916 38.8 Plus
betaTub60D-PB 453 CG3401-PB 1..438 1..443 914 38.6 Plus
betaTub56D-PA 456 CG9277-PA 30..448 21..449 905 39.6 Plus
CG32396-PA 462 CG32396-PA 1..437 1..446 758 34.7 Plus
gammaTub23C-PA 475 CG3157-PA 4..441 3..433 607 31.8 Plus
gammaTub37C-PB 457 CG17566-PB 4..437 3..433 589 31 Plus
gammaTub37C-PA 457 CG17566-PA 4..437 3..433 589 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23057-PA 450 GI23057-PA 1..450 1..450 2439 100 Plus
Dmoj\GI23620-PA 414 GI23620-PA 1..413 36..448 2073 95.9 Plus
Dmoj\GI13261-PA 461 GI13261-PA 1..450 1..439 1662 68 Plus
Dmoj\GI23711-PA 452 GI23711-PA 6..435 3..435 1250 52.9 Plus
Dmoj\GI20729-PA 447 GI20729-PA 1..424 1..434 903 40.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12416-PA 1216 GL12416-PA 768..1216 2..450 2468 100 Plus
Dper\GL12714-PA 464 GL12714-PA 1..461 1..450 1720 68.5 Plus
Dper\GL12586-PA 458 GL12586-PA 6..458 3..448 1269 51.4 Plus
Dper\GL16725-PA 447 GL16725-PA 1..424 1..434 903 40.6 Plus
Dper\GL13671-PA 445 GL13671-PA 1..423 1..434 835 39.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15128-PA 450 GA15128-PA 1..450 1..450 2439 100 Plus
Dpse\GA20973-PA 464 GA20973-PA 1..461 1..450 1720 68.5 Plus
Dpse\GA20592-PA 458 GA20592-PA 6..458 3..448 1269 51.4 Plus
Dpse\GA27086-PB 455 GA27086-PB 1..439 1..449 910 39 Plus
Dpse\GA27686-PA 447 GA27686-PA 1..424 1..434 903 40.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10931-PA 450 GM10931-PA 1..450 1..450 2439 100 Plus
Dsec\GM10965-PA 450 GM10965-PA 1..450 1..450 2429 99.8 Plus
Dsec\GM26223-PA 449 GM26223-PA 1..449 1..450 2255 95.3 Plus
Dsec\GM25175-PA 462 GM25175-PA 1..457 1..449 1730 68.9 Plus
Dsec\GM15273-PA 455 GM15273-PA 6..436 3..435 1277 53.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19909-PA 450 GD19909-PA 1..450 1..450 2439 100 Plus
Dsim\GD19940-PA 450 GD19940-PA 1..450 1..450 2429 99.8 Plus
Dsim\GD20767-PA 449 GD20767-PA 1..449 1..450 2255 95.3 Plus
Dsim\GD14204-PA 462 GD14204-PA 1..457 1..449 1730 68.9 Plus
Dsim\GD19196-PA 455 GD19196-PA 6..436 3..435 1277 53.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24568-PA 450 GJ24568-PA 1..450 1..450 2439 100 Plus
Dvir\GJ11156-PA 414 GJ11156-PA 1..413 36..448 2072 95.6 Plus
Dvir\GJ12031-PA 460 GJ12031-PA 1..450 1..439 1673 68.2 Plus
Dvir\GJ23270-PA 450 GJ23270-PA 6..435 3..435 1269 53.6 Plus
Dvir\GJ20466-PA 447 GJ20466-PA 1..424 1..434 903 40.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12743-PA 450 GK12743-PA 1..450 1..450 2439 100 Plus
Dwil\GK14362-PA 449 GK14362-PA 1..448 1..448 2363 96.9 Plus
Dwil\GK16627-PA 462 GK16627-PA 1..446 1..435 1702 70.2 Plus
Dwil\GK11238-PA 456 GK11238-PA 6..449 3..449 1280 52.8 Plus
Dwil\GK15706-PA 447 GK15706-PA 1..424 1..434 903 40.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\alphaTub84B-PA 450 GE24900-PA 1..450 1..450 2439 100 Plus
Dyak\GE24934-PA 450 GE24934-PA 1..450 1..450 2428 99.6 Plus
Dyak\GE24741-PA 449 GE24741-PA 1..449 1..450 2255 95.3 Plus
Dyak\GE20865-PA 462 GE20865-PA 1..457 1..449 1732 69.3 Plus
Dyak\GE25507-PA 455 GE25507-PA 6..436 3..435 1269 53.8 Plus

AT25469.hyp Sequence

Translation from 129 to 1481

> AT25469.hyp
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY
*

AT25469.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
alphaTub84B-PA 450 CG1913-PA 1..450 1..450 2392 100 Plus
alphaTub84D-PA 450 CG2512-PA 1..450 1..450 2381 99.6 Plus
alphaTub85E-PA 449 CG9476-PA 1..449 1..450 2283 95.3 Plus
alphaTub67C-PA 462 CG8308-PA 1..456 1..445 1735 69.1 Plus
CG7794-PA 455 CG7794-PA 6..436 3..435 1279 53.6 Plus