Clone AT25476 Report

Search the DGRC for AT25476

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:254
Well:76
Vector:pOTB7
Associated Gene/TranscriptCG7514-RA
Protein status:AT25476.pep: gold
Preliminary Size:906
Sequenced Size:1202

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7514 2002-01-01 Sim4 clustering to Release 2
CG7514 2002-02-22 Blastp of sequenced clone
CG7514 2003-01-01 Sim4 clustering to Release 3
CG7514 2008-04-29 Release 5.5 accounting
CG7514 2008-08-15 Release 5.9 accounting
CG7514 2008-12-18 5.12 accounting

Clone Sequence Records

AT25476.complete Sequence

1202 bp (1202 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089436

> AT25476.complete
TCAGCCTTTTAAATCTAGTTTCGGCTTAAATAAATTTCTTAAATTCGAAT
TTCTAAACCGTTTGTGAGTGGCCATGGCGTACAGCATCGAAAAGAAATCC
ATACCCGGCTACATGATGTACATCAATGGCGGTCTGGCCGGAATGCTGGG
CACCTGCATTGTGCAGCCATTGGATTTGGTGAAGACCAGGATGCAGATAT
CAGCCACGACGGGCGAGTACAAGAGCTCCTTCGATTGCCTGCTAAAGGTT
TTTAAAAACGAGGGCATACTTGCGTTGTATAATGGATTGAGTGCGGGATT
GATGCGACAGGCCACGTACACGACAGCCCGAATGGGTTTCTACCAAATGG
AGATCGACGCCTATCGCAAGCAGTTCAATGCACCGCCCACTGTGTTGGCC
AGCATGGGTATGGGCATTCTGGCCGGTGCTTTCGGTGCCATGTTCGGCAA
TCCGGCGGAGGTGGCCCTCATCCGGATGATGTCCGATAACCGATTGCCGC
CGGCGGAGAGGCGAAACTACACGGGTGTTTTGAACGCCTTTGTGCGGATC
GTCAAGGACGAGGGCGTGATCACCCTCTGGAAAGGATGCATGCCCACTGT
GGGTCGGGCCATGATCGTCAACATGGTTCAGCTGGCCTCGTACTCGCAGT
TAAAGGCAGCATTTTCGGAATACTTTTCGGGACTTTCGCTTCACATCGCT
GCCGCCATGATGTCCGGTCTATTGACCACCATTGCCTCAATGCCACTGGA
CATGGCCAAAACGCGCATCCAGCAGCAAAAGACGGCCGAGTACAAGGGCA
CCATGGATGTCCTGATGAAGGTCTCCAAGAATGAGGGTATCGCCTCCCTA
TGGAAGGGCTTCACGCCCTATTTGTGTCGCTTAGGACCGCACACGGTGTT
TGCCTTTATATTCCTGGAACAACTCACCAAGGCCTACAAGCACATTGTGC
TCGGCGACGATTCTGAATCGAACATCTAAGTTTTTTTTTTAGGACCTATA
TTTGTTTACTACCCAAATTAACAGTCATCTGTTAGAAATAACCTTTCTTG
AATCTTACGAATTTCGTCCACTTTGTGTTGCCAAAACAATATATTACTTT
GATCATACAAATTAGATTTGGAGTGTGGAGCTTTTTAAATAGCCATGTAC
AATATTCAATAAAAAATATAGTTTACTGCATGAAAAAAAAAAAAAAAAAA
AA

AT25476.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7514-RA 1188 CG7514-RA 1..1178 1..1177 5655 98.8 Plus
CG18418-RA 1142 CG18418-RA 416..541 396..521 285 81.7 Plus
CG18418-RA 1142 CG18418-RA 265..372 245..352 225 80.5 Plus
CG18418-RA 1142 CG18418-RA 724..798 701..775 195 84 Plus
CG18418-RA 1142 CG18418-RA 152..217 138..203 165 83.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4686943..4688124 1182..1 5685 98.7 Minus
chr3L 24539361 chr3L 4688762..4689269 639..138 600 75 Minus
chr3L 24539361 chr3L 4688623..4688697 775..701 195 84 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:55:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4687597..4688774 1177..1 5645 98.8 Minus
3L 28110227 3L 4689412..4689919 639..138 600 75 Minus
3L 28110227 3L 4689273..4689347 775..701 195 84 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4687597..4688774 1177..1 5655 98.8 Minus
3L 28103327 3L 4689530..4689655 521..396 285 81.7 Minus
3L 28103327 3L 4689699..4689806 352..245 225 80.5 Minus
3L 28103327 3L 4689273..4689347 775..701 195 84 Minus
3L 28103327 3L 4689854..4689919 203..138 165 83.3 Minus
Blast to na_te.dros performed on 2019-03-16 00:55:19 has no hits.

AT25476.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:56:34 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4686943..4688124 1..1182 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:21:26 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..906 74..979 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:41:09 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..906 74..979 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:59:40 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..906 74..979 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:28 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..906 74..979 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:16:57 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..906 74..979 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:06:01 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..1182 1..1182 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:41:09 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..1182 1..1182 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:59:40 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..1182 1..1182 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:28 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..1182 1..1182 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:16:57 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
CG7514-RA 1..1182 1..1182 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:34 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4687591..4688774 1..1182 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:34 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4687591..4688774 1..1182 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:56:34 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4687591..4688774 1..1182 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:59:40 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4687591..4688774 1..1182 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:47 Download gff for AT25476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4687591..4688774 1..1182 98   Minus

AT25476.pep Sequence

Translation from 73 to 978

> AT25476.pep
MAYSIEKKSIPGYMMYINGGLAGMLGTCIVQPLDLVKTRMQISATTGEYK
SSFDCLLKVFKNEGILALYNGLSAGLMRQATYTTARMGFYQMEIDAYRKQ
FNAPPTVLASMGMGILAGAFGAMFGNPAEVALIRMMSDNRLPPAERRNYT
GVLNAFVRIVKDEGVITLWKGCMPTVGRAMIVNMVQLASYSQLKAAFSEY
FSGLSLHIAAAMMSGLLTTIASMPLDMAKTRIQQQKTAEYKGTMDVLMKV
SKNEGIASLWKGFTPYLCRLGPHTVFAFIFLEQLTKAYKHIVLGDDSESN
I*

AT25476.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24720-PA 300 GF24720-PA 6..300 7..301 1323 83.1 Plus
Dana\GF24719-PA 300 GF24719-PA 6..300 7..301 1312 82 Plus
Dana\GF24717-PA 312 GF24717-PA 3..307 1..298 1006 62.3 Plus
Dana\GF23354-PA 309 GF23354-PA 6..309 7..301 888 58.2 Plus
Dana\GF11222-PA 288 GF11222-PA 14..277 16..283 441 33.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14166-PA 301 GG14166-PA 1..301 1..301 1536 94 Plus
Dere\GG14165-PA 310 GG14165-PA 3..309 1..300 1089 65.8 Plus
Dere\GG11672-PA 317 GG11672-PA 21..317 16..301 881 56.2 Plus
Dere\GG19610-PA 280 GG19610-PA 9..272 15..284 431 34.1 Plus
Dere\GG15457-PA 304 GG15457-PA 22..287 19..291 377 34.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15793-PA 310 GH15793-PA 7..306 6..299 1090 67.4 Plus
Dgri\GH18903-PA 316 GH18903-PA 14..314 11..300 888 58.5 Plus
Dgri\GH13941-PA 167 GH13941-PA 1..160 141..295 588 68.8 Plus
Dgri\GH19040-PA 288 GH19040-PA 12..271 19..284 437 34.9 Plus
Dgri\GH15856-PA 287 GH15856-PA 12..273 16..283 433 32.5 Plus
Dgri\GH13941-PA 167 GH13941-PA 8..159 48..203 142 24.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7514-PA 301 CG7514-PA 1..301 1..301 1537 100 Plus
CG18418-PA 311 CG18418-PA 3..310 1..301 1046 65.9 Plus
CG1907-PA 317 CG1907-PA 21..317 16..301 841 56.2 Plus
Dic1-PC 280 CG8790-PC 9..272 15..284 425 34.8 Plus
Dic1-PA 280 CG8790-PA 9..272 15..284 425 34.8 Plus
Dic1-PB 280 CG8790-PB 9..272 15..284 425 34.8 Plus
Dic2-PC 304 CG4323-PC 22..287 19..291 421 36 Plus
Dic2-PA 304 CG4323-PA 22..287 19..291 421 36 Plus
Dic3-PA 287 CG11196-PA 15..283 19..291 390 30.8 Plus
Bmcp-PB 303 CG7314-PB 10..302 16..286 338 29.8 Plus
Bmcp-PA 303 CG7314-PA 10..302 16..286 338 29.8 Plus
Ucp4B-PA 337 CG18340-PA 25..330 1..286 338 29.4 Plus
Dic4-PC 302 CG18363-PC 26..299 19..296 323 28.5 Plus
Dic4-PA 302 CG18363-PA 26..299 19..296 323 28.5 Plus
CG18324-PB 307 CG18324-PB 6..293 16..284 320 26.7 Plus
Ucp4C-PA 335 CG9064-PA 37..326 13..284 304 28.4 Plus
Ucp4A-PB 340 CG6492-PB 44..333 16..286 303 29.3 Plus
Ucp4A-PA 340 CG6492-PA 44..333 16..286 303 29.3 Plus
CG5254-PA 306 CG5254-PA 21..295 19..282 294 29 Plus
CG18327-PB 304 CG18327-PB 6..293 16..284 286 26.2 Plus
CG18327-PA 304 CG18327-PA 6..293 16..284 286 26.2 Plus
CG6893-PB 250 CG6893-PB 14..249 56..296 274 26.9 Plus
CG8323-PA 303 CG8323-PA 6..293 16..284 271 26 Plus
sea-PE 317 CG6782-PE 38..315 17..291 250 24.9 Plus
sea-PD 317 CG6782-PD 38..315 17..291 250 24.9 Plus
sea-PC 317 CG6782-PC 38..315 17..291 250 24.9 Plus
sea-PA 317 CG6782-PA 38..315 17..291 250 24.9 Plus
aralar1-PB 679 CG2139-PB 333..604 19..288 250 28.5 Plus
aralar1-PD 682 CG2139-PD 336..607 19..288 250 28.5 Plus
aralar1-PA 682 CG2139-PA 336..607 19..288 250 28.5 Plus
aralar1-PF 694 CG2139-PF 336..607 19..288 250 28.5 Plus
aralar1-PC 695 CG2139-PC 349..620 19..288 250 28.5 Plus
aralar1-PE 707 CG2139-PE 361..632 19..288 250 28.5 Plus
GC1-PB 321 CG18347-PB 26..293 17..270 243 30.1 Plus
GC1-PA 321 CG18347-PA 26..293 17..270 243 30.1 Plus
colt-PD 306 CG3057-PD 8..299 4..288 240 26.8 Plus
colt-PA 306 CG3057-PA 8..299 4..288 240 26.8 Plus
GC2-PB 319 CG12201-PB 25..288 17..270 234 30 Plus
CG8026-PB 304 CG8026-PB 23..303 13..285 233 25.2 Plus
CG18324-PA 199 CG18324-PA 1..185 111..284 221 26.5 Plus
CG8026-PD 322 CG8026-PD 23..303 13..285 220 24.8 Plus
CG9582-PB 300 CG9582-PB 14..296 13..289 215 27.6 Plus
CG9582-PA 300 CG9582-PA 14..296 13..289 215 27.6 Plus
MME1-PA 299 CG3476-PA 7..291 4..282 204 24.2 Plus
Ucp4B-PC 228 CG18340-PC 25..222 1..187 194 27.7 Plus
CG4995-PD 360 CG4995-PD 5..263 16..278 194 24 Plus
CG4995-PC 360 CG4995-PC 5..263 16..278 194 24 Plus
CG4995-PB 399 CG4995-PB 44..302 16..278 194 24 Plus
CG4995-PA 399 CG4995-PA 44..302 16..278 194 24 Plus
Ucp4B-PB 222 CG18340-PB 25..219 1..184 193 28.1 Plus
CG5254-PB 237 CG5254-PB 1..226 59..282 188 24.8 Plus
CG4995-PB 399 CG4995-PB 38..218 105..286 170 25.3 Plus
CG4995-PA 399 CG4995-PA 38..218 105..286 170 25.3 Plus
Ucp4C-PA 335 CG9064-PA 149..327 22..194 166 24 Plus
CG4995-PD 360 CG4995-PD 8..179 114..286 166 26 Plus
CG4995-PC 360 CG4995-PC 8..179 114..286 166 26 Plus
CG18327-PB 304 CG18327-PB 112..300 19..200 151 22.2 Plus
CG18327-PA 304 CG18327-PA 112..300 19..200 151 22.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:42:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12576-PA 310 GI12576-PA 4..306 3..298 1068 65.3 Plus
Dmoj\GI23120-PA 315 GI23120-PA 6..313 4..300 891 58.1 Plus
Dmoj\GI24334-PA 280 GI24334-PA 12..271 19..284 448 35.7 Plus
Dmoj\GI12639-PA 273 GI12639-PA 1..253 25..283 420 34.4 Plus
Dmoj\GI10541-PA 289 GI10541-PA 14..283 19..291 375 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17935-PA 312 GL17935-PA 9..307 6..297 1185 72.6 Plus
Dper\GL13895-PA 320 GL13895-PA 13..320 5..301 891 54.5 Plus
Dper\GL10604-PA 290 GL10604-PA 5..275 6..283 452 34.5 Plus
Dper\GL24469-PA 282 GL24469-PA 13..279 19..291 446 34.4 Plus
Dper\GL24092-PA 299 GL24092-PA 22..280 19..284 430 36.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20405-PA 312 GA20405-PA 9..307 6..297 1187 72.6 Plus
Dpse\GA15123-PA 320 GA15123-PA 13..320 5..301 895 54.9 Plus
Dpse\GA10831-PA 290 GA10831-PA 5..275 6..283 450 34.5 Plus
Dpse\GA21325-PA 282 GA21325-PA 13..279 19..291 446 34.4 Plus
Dpse\GA18108-PA 299 GA18108-PA 22..280 19..284 430 36.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13956-PA 301 GM13956-PA 1..301 1..301 1590 98.7 Plus
Dsec\GM13955-PA 311 GM13955-PA 3..310 1..301 1082 64.9 Plus
Dsec\GM12797-PA 317 GM12797-PA 21..317 16..301 883 57.2 Plus
Dsec\GM24103-PA 280 GM24103-PA 5..272 6..284 437 34.4 Plus
Dsec\GM23191-PA 304 GM23191-PA 22..287 19..291 418 35.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13239-PA 301 GD13239-PA 1..301 1..301 1587 98.3 Plus
Dsim\GD13238-PA 311 GD13238-PA 3..310 1..298 1083 65.9 Plus
Dsim\GD21444-PA 317 GD21444-PA 21..317 16..301 883 57.2 Plus
Dsim\GD18902-PA 280 GD18902-PA 5..272 6..284 433 34 Plus
Dsim\GD10201-PA 287 GD10201-PA 15..275 19..283 420 32.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15480-PA 311 GJ15480-PA 3..306 1..297 1168 71.7 Plus
Dvir\GJ10609-PA 315 GJ10609-PA 8..313 6..300 891 58.5 Plus
Dvir\GJ10419-PA 288 GJ10419-PA 13..272 19..284 438 35.6 Plus
Dvir\GJ12758-PA 286 GJ12758-PA 12..273 16..283 422 32.8 Plus
Dvir\GJ24196-PA 283 GJ24196-PA 14..279 19..291 342 32.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11904-PA 326 GK11904-PA 19..321 6..297 933 59.7 Plus
Dwil\GK13938-PA 282 GK13938-PA 13..279 19..291 438 34.4 Plus
Dwil\GK21563-PA 291 GK21563-PA 11..272 16..283 425 32.5 Plus
Dwil\GK22729-PA 314 GK22729-PA 19..285 19..291 374 31.8 Plus
Dwil\GK11388-PA 303 GK11388-PA 6..296 16..286 323 28.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20593-PA 301 GE20593-PA 1..301 1..301 1551 95.7 Plus
Dyak\GE20592-PA 313 GE20592-PA 3..313 1..301 1089 65.9 Plus
Dyak\GE23862-PA 317 GE23862-PA 21..317 16..301 889 57.6 Plus
Dyak\GE26266-PA 280 GE26266-PA 13..272 19..284 435 34.6 Plus
Dyak\GE11146-PA 304 GE11146-PA 22..287 19..291 421 34.9 Plus

AT25476.hyp Sequence

Translation from 73 to 978

> AT25476.hyp
MAYSIEKKSIPGYMMYINGGLAGMLGTCIVQPLDLVKTRMQISATTGEYK
SSFDCLLKVFKNEGILALYNGLSAGLMRQATYTTARMGFYQMEIDAYRKQ
FNAPPTVLASMGMGILAGAFGAMFGNPAEVALIRMMSDNRLPPAERRNYT
GVLNAFVRIVKDEGVITLWKGCMPTVGRAMIVNMVQLASYSQLKAAFSEY
FSGLSLHIAAAMMSGLLTTIASMPLDMAKTRIQQQKTAEYKGTMDVLMKV
SKNEGIASLWKGFTPYLCRLGPHTVFAFIFLEQLTKAYKHIVLGDDSESN
I*

AT25476.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:15:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7514-PA 301 CG7514-PA 1..301 1..301 1537 100 Plus
CG18418-PA 311 CG18418-PA 3..310 1..301 1046 65.9 Plus
CG1907-PA 317 CG1907-PA 21..317 16..301 841 56.2 Plus
Dic1-PC 280 CG8790-PC 9..272 15..284 425 34.8 Plus
Dic1-PA 280 CG8790-PA 9..272 15..284 425 34.8 Plus