Clone AT25633 Report

Search the DGRC for AT25633

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:256
Well:33
Vector:pOTB7
Associated Gene/TranscriptAsciz-RA
Protein status:AT25633.pep: gold
Sequenced Size:2023

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14962 2002-01-01 Sim4 clustering to Release 2
CG14962 2002-02-22 Blastp of sequenced clone
CG14962 2003-01-01 Sim4 clustering to Release 3
CG14962 2008-04-29 Release 5.5 accounting
CG14962 2008-08-15 Release 5.9 accounting
CG32280 2008-08-15 Release 5.9 accounting
CG14962 2008-12-18 5.12 accounting
CG32280 2008-12-18 5.12 accounting

Clone Sequence Records

AT25633.complete Sequence

2023 bp (2023 high quality bases) assembled on 2002-02-22

GenBank Submission: AY089440

> AT25633.complete
AAAAAGCAGAATGAAATATTTTCCCGTGTACAGAGCAACCTTCTTATCGA
ATTGATGCTTCTTTTTGGAAGAGTATGCGATAAATTAGAATATTCAGCTG
TGTACGTATGCAGCGTTTTCATGTATTTCTCTGTGCCGCATGCAAATTTT
ATGAATCGAACTTAAGGCCCACCGGCCGTATTCATCCAACGAAATTAACG
TAAATTGTGGTGAAATTGCGCACAATTACTATGGAATCTAAGCACTGTTT
GTGGATAGAACTGGATTCGAGTTTGGACGACCTTGGGTACGCCCTTTTAA
GATCGCTTTTTGTAAACCCAGCCCTCCATTCAATAACGATCGTGATGATG
ATGAAGTTGCTTTGGATGATGTGTATTCCGCACACTATCTTTCGCACCGC
CAGATGTTTTCGACCGATTCAGATGTCACAGATGACGTAGTCGCGCCAAA
AATAACCACTTCAGGGCGCGGCAAGGACGCGGGGGGCGTGGCAAAACAAG
AGCAACAGGCAACGGGTTTACAGCTTGTCGCACCTGCACAAATATTCTTT
CGAAAGTGATCGTTACCTCGTATTTTACAACCGAGAGAGATACGTTGCAG
AGTGACCGTTACAAGTATCGTTCAGAAATACCGTAGCAAGGCAATCGATA
ACTTTCGATTTTTCTTGTATCGATTGCATTCCGTTCCCATACAATAGAAG
TGCCATCGAAATGCACAGCGAAAAACACACGCCGGATATTCGGGAATTAA
TGCCCGTTAGGGAGCACAGGTGCGAGAGATGTCCGAGTCTTGTCTTTGGC
AACCTCAGTCACTATCAGCTGCACCTGCGACGGCGCCACCAGGAGGTTAT
CCCACCCTCTGTGATCGGGCCAATTGTCGCATTCCATTGCCCCGTGGAAA
AGTGCATCTACCATGTGGCTACCAAGGGAGCCCGCAGCTTCACCAGCTTG
CGCTTGCTGCGACAGCACTACCAGAAGAGCCACCTGGACAAGAACTACAA
GTGCCTGGCGTGCGGCGGGAAATTCCTGCTGCAGCACCATCTGGAGAAGC
ATCAGTGCTCAAAACACAAGTGTCCAGTGTGTGAACTGACCTACAACAGC
AAGGCTGGCCTCAGGACCCACATGCGGCGCAAGAACCATTTGGTGCATCA
CGAATCCGACAAGGTTCCCATACCCTCGCTGGCCACATGGAAAAGGCTGA
ATCCACAGCCAATTCCCGTTTCTGCAGATTCCTTAACCGCCCACAGTTTG
AAAACAGGCAGTGATTTACATCCGTCAGAGGAATATATTAACAACCTGCC
TTCCAACTTGGCGGGGGTTACTGAACTATATGCTGAAATACCCAATCCGG
AGGCCAATATGCCCTCCACTCTTGAACTGGATACCAATTTACCGGCTGCA
GAGGAACATATTCTTTGTTTCCTGCCCATTATGGATGTGTCCTATGCGCT
AGAGATGTCATCCCAGAAACTAGATATGGAAACACAAACGGAGGAGGACG
ATCTGAATGAAATCAGGAACGAAGTGCTGGCGCCCTTGTTACGCGATATA
GAAACCCAAACGCCCGACACCAGAGGCGACATAGGAACGATGACCGATGA
TTTCCCAGAGGAACAGGAGCCTGTTGCGGTCGGAAGCCATTTCCACGCGT
ATTCAGAAACTGAACCTATGTTTGACTTGCAAACCTCTGCCCACATGTAC
ACCCAAACTTGCGACGATTTGTTTGAGGAACTGGGGCTGTCCCACATCCA
AACCCAAACTCACTGGCCAGATGGTCTGTACAACACGCAGCACACGCAGA
CCTGCGATGAAATAATGGACGAACTCTTCCCCGACAACTTTCAGTCGACT
TGCACGCAAACCAGGTGGCTGGACTGAAAGGATACTAGGAGAAGGCGGAA
GGTAGAATGAGCAGATAAAAAACTCATTGTATTATATACAGTTATATATT
TATTATTTGTTAAAGTGAAAATTAAGTAAATTATTATTCTGTGAAAACAC
AAAAAAAAAAAAAAAAAAAAAAA

AT25633.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14962-RA 2009 CG14962-RA 1..2006 1..2004 9885 99.6 Plus
CG32280-RC 1440 CG32280-RC 245..370 523..398 630 100 Minus
CG32280-RB 1249 CG32280-RB 1..94 625..534 400 96.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3163233..3164711 2000..522 7380 99.9 Minus
chr3L 24539361 chr3L 3165023..3165346 523..200 1620 100 Minus
chr3L 24539361 chr3L 3165586..3165695 110..1 550 100 Minus
chr3L 24539361 chr3L 3165402..3165496 204..110 475 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:58:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3163782..3165266 2004..522 7285 99.5 Minus
3L 28110227 3L 3165578..3165901 523..200 1620 100 Minus
3L 28110227 3L 3166141..3166250 110..1 535 99.1 Minus
3L 28110227 3L 3165956..3166051 205..110 480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3163782..3165266 2004..522 7295 99.5 Minus
3L 28103327 3L 3165578..3165901 523..200 1620 100 Minus
3L 28103327 3L 3166141..3166250 110..1 535 99 Minus
3L 28103327 3L 3165956..3166051 205..110 480 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:20:00 has no hits.

AT25633.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:21:09 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3165587..3165695 1..109 100   Minus
chr3L 3163304..3164709 524..1929 99 <- Minus
chr3L 3165023..3165346 200..523 100 <- Minus
chr3L 3165407..3165496 110..199 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:21:39 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..1167 711..1877 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:40:57 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..1167 711..1877 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:24:13 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..1167 711..1877 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:10:21 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..1167 711..1877 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:02:22 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
Asciz-RA 1..1167 711..1877 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:05:50 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..2002 1..2000 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:40:57 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..2002 1..2000 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:13 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RB 1..2002 1..2000 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:10:21 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
CG14962-RA 1..2002 1..2000 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:02:22 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
Asciz-RB 1..2002 1..2000 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:09 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3165962..3166051 110..199 100 <- Minus
3L 3166142..3166250 1..109 99   Minus
3L 3163786..3165264 524..2000 99 <- Minus
3L 3165578..3165901 200..523 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:09 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3165962..3166051 110..199 100 <- Minus
3L 3166142..3166250 1..109 99   Minus
3L 3163786..3165264 524..2000 99 <- Minus
3L 3165578..3165901 200..523 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:09 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3165962..3166051 110..199 100 <- Minus
3L 3166142..3166250 1..109 99   Minus
3L 3163786..3165264 524..2000 99 <- Minus
3L 3165578..3165901 200..523 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:13 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3166142..3166250 1..109 99   Minus
arm_3L 3163786..3165264 524..2000 99 <- Minus
arm_3L 3165578..3165901 200..523 100 <- Minus
arm_3L 3165962..3166051 110..199 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:44:39 Download gff for AT25633.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3163786..3165264 524..2000 99 <- Minus
3L 3165578..3165901 200..523 100 <- Minus
3L 3165962..3166051 110..199 100 <- Minus
3L 3166142..3166250 1..109 99   Minus

AT25633.pep Sequence

Translation from 710 to 1876

> AT25633.pep
MHSEKHTPDIRELMPVREHRCERCPSLVFGNLSHYQLHLRRRHQEVIPPS
VIGPIVAFHCPVEKCIYHVATKGARSFTSLRLLRQHYQKSHLDKNYKCLA
CGGKFLLQHHLEKHQCSKHKCPVCELTYNSKAGLRTHMRRKNHLVHHESD
KVPIPSLATWKRLNPQPIPVSADSLTAHSLKTGSDLHPSEEYINNLPSNL
AGVTELYAEIPNPEANMPSTLELDTNLPAAEEHILCFLPIMDVSYALEMS
SQKLDMETQTEEDDLNEIRNEVLAPLLRDIETQTPDTRGDIGTMTDDFPE
EQEPVAVGSHFHAYSETEPMFDLQTSAHMYTQTCDDLFEELGLSHIQTQT
HWPDGLYNTQHTQTCDEIMDELFPDNFQSTCTQTRWLD*

AT25633.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10218-PA 363 GF10218-PA 5..353 7..388 1160 59.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14477-PA 388 GG14477-PA 1..388 1..388 1811 86.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16080-PA 459 GH16080-PA 4..449 5..387 781 45.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Asciz-PB 388 CG14962-PB 1..388 1..388 2111 100 Plus
Asciz-PA 388 CG14962-PA 1..388 1..388 2111 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12343-PA 408 GI12343-PA 2..408 3..386 865 50.1 Plus
Dmoj\GI11512-PA 245 GI11512-PA 13..140 8..139 239 39.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20749-PA 366 GL20749-PA 11..357 5..388 901 51.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13387-PA 366 GA13387-PA 11..357 5..388 903 51.8 Plus
Dpse\GA24232-PA 295 GA24232-PA 9..120 2..116 178 36.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14079-PA 388 GM14079-PA 1..388 1..388 2028 96.6 Plus
Dsec\GM22083-PA 256 GM22083-PA 10..152 9..138 153 28.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13353-PA 147 GD13353-PA 1..125 1..125 654 94.4 Plus
Dsim\GD12058-PA 252 GD12058-PA 22..148 21..138 152 30 Plus
Dsim\GD13353-PA 147 GD13353-PA 123..147 364..388 143 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12234-PA 165 GJ12234-PA 2..159 3..159 479 61 Plus
Dvir\GJ12235-PA 221 GJ12235-PA 71..212 255..388 432 64.8 Plus
Dvir\GJ13703-PA 210 GJ13703-PA 13..203 8..211 225 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18030-PA 382 GK18030-PA 4..366 3..388 877 48.5 Plus
Dwil\GK17444-PA 282 GK17444-PA 6..136 3..131 220 37.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21664-PA 394 GE21664-PA 1..385 1..388 1786 86.3 Plus

AT25633.hyp Sequence

Translation from 710 to 1876

> AT25633.hyp
MHSEKHTPDIRELMPVREHRCERCPSLVFGNLSHYQLHLRRRHQEVIPPS
VIGPIVAFHCPVEKCIYHVATKGARSFTSLRLLRQHYQKSHLDKNYKCLA
CGGKFLLQHHLEKHQCSKHKCPVCELTYNSKAGLRTHMRRKNHLVHHESD
KVPIPSLATWKRLNPQPIPVSADSLTAHSLKTGSDLHPSEEYINNLPSNL
AGVTELYAEIPNPEANMPSTLELDTNLPAAEEHILCFLPIMDVSYALEMS
SQKLDMETQTEEDDLNEIRNEVLAPLLRDIETQTPDTRGDIGTMTDDFPE
EQEPVAVGSHFHAYSETEPMFDLQTSAHMYTQTCDDLFEELGLSHIQTQT
HWPDGLYNTQHTQTCDEIMDELFPDNFQSTCTQTRWLD*

AT25633.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Asciz-PB 388 CG14962-PB 1..388 1..388 2111 100 Plus
Asciz-PA 388 CG14962-PA 1..388 1..388 2111 100 Plus