Clone AT25873 Report

Search the DGRC for AT25873

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:258
Well:73
Vector:pOTB7
Associated Gene/TranscriptCG1882-RB
Protein status:AT25873.pep: gold
Preliminary Size:1952
Sequenced Size:1476

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1882 2003-01-01 Sim4 clustering to Release 3
CG1882 2003-02-13 Blastp of sequenced clone
CG1882 2008-04-29 Release 5.5 accounting
CG1882 2008-08-15 Release 5.9 accounting
CG1882 2008-12-18 5.12 accounting

Clone Sequence Records

AT25873.complete Sequence

1476 bp (1476 high quality bases) assembled on 2003-02-13

GenBank Submission: BT003796

> AT25873.complete
AAGATATACCCAATTACCCAGCCACATTTCGCTAGCAACTGCGCAATTAA
CCGACAGCCGCTGGTTAAGTAATTTTCGGGTCGGACCACCTGGCATGGAT
GACATAGCCAGCGGCTAGAGGATCCCCGGAACAATAGATTCTTTCTCTGG
AAATGGTTGTGTAACTGGACATCCAGCTCACCAACTATGCTGCGTGCCGT
GGAGAAGAAGATACTGTCGTACGTGAAGCTGCCCTACCGCGGCTTCTTCG
TGGATATCGGGCCGGCGGTGGGCGAAGCGGATAAGATCTGGACCATCAGC
ATGAATACCGAGTCCAAGGAGGTGCCGCTGGTGCTCCTGCATGGCCTGGG
CGCAGGCATTGCCCTGTGGGTGATGAACCTCGATGCCTTTGCCAAGGGCC
GACCAGTATACGCCATGGACATCCTCGGATTCGGTCGCAGCTCTCGGCCG
CTGTTCGCCAAGGATGCGCTGGTGTGCGAGAAGCAATTTGTGAAATCGGT
GGAGGAGTGGCGGCGCGAGATGAACATCAACGACATGATTCTGTTGGGCC
ACTCGATGGGCGGCTTCATTGCCTCCAGCTACGCCCTCTCACATCCGGAG
CGTGTGAAACACCTCATACTGGCCGATCCCTGGGGCTTCCCCGAGAAGCC
CTCGGATTCGACCAACGGCAAAACAATACCGCTCTGGGTGCGGGCCATAG
CTAGAGTACTGACCCCGCTAAATCCGTTGTGGGCTCTCCGCGCCGCCGGA
CCCTTTGGCCAGTGGGTGGTGCAAAAGACGCGGCCAGACATTATGCGAAA
GTTCCAGAGCACCATCGAGGAGGATATCAACTTGCTGCCGCAGTACATAC
ACCAGTGCAATGCGCAGAATCCCAGCGGTGAGTCCGCCTTCCACACAATG
ATGCAATCCTTTGGATGGGCCAAGCACCCCATGATTCACCGCATCAAGGA
CGTGCGCAGCGACATACCAATCACGTTCATCTACGGCTCCCGTTCGTGGA
TCGACTCGTCGTCGGGGGAGAAGATCAAGTCGCAGCGCGGCAGCAATATG
GTGGACATCAAGATCGTGACGGGCGCCGGCCACCACGTATATGCCGACAA
GCCGGACGTGTTCAACCGCTACGTGAACGAGACCTGTGATATGTACAAGG
TGGCCGGTGGCAAGCTGATAACGCCCCTGCAGCTAATCCGCGAATCCACC
GAGTCCGACGAGGAGCGCGAGCCCAGCCTGAGCACAGCGAAGACGGTCGA
GGTCCAGCCAGAAGTCCAGCCGGTGCCCCAACCTGTCACCGCAGCCGACA
CATCCACGCCGACCGCCGACGAACTGGCGGCGAACATCAAACCGAAGTGA
GCAGAAGCAGCGGCATTCGCTGAGAACCAAACAAAAATCACAGCTCGCCT
GCCAGCCTGTATCTATTAGCTTAGTGTCTTTGCCTAGTATTAAATGGTCA
TCTTATCCAAAAAAAAAAAAAAAAAA

AT25873.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-RB 1766 CG1882-RB 37..1496 1..1460 7285 99.9 Plus
CG1882-RA 2368 CG1882-RA 561..1906 115..1460 6715 99.9 Plus
CG1882.c 2642 CG1882.c 561..1906 115..1460 6715 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:12:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3700600..3701939 119..1458 6685 99.9 Plus
chr2R 21145070 chr2R 3700399..3700519 1..121 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:59:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7813279..7814620 119..1460 6695 99.9 Plus
2R 25286936 2R 7813078..7813198 1..121 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7814478..7815819 119..1460 6695 99.9 Plus
2R 25260384 2R 7814277..7814397 1..121 605 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:12:17 has no hits.

AT25873.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:13:13 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3700399..3700518 1..120 100 -> Plus
chr2R 3700602..3701939 121..1458 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:21:59 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 130..1365 115..1350 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:52:28 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 130..1365 115..1350 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:29:24 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 130..1365 115..1350 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:35 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 130..1365 115..1350 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:04 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RA 130..1365 115..1350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:06:30 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 2..1459 1..1458 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:52:28 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 2..1459 1..1458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:29:24 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 1..1458 1..1458 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:35 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 2..1459 1..1458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:04 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
CG1882-RB 1..1458 1..1458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:13 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7813078..7813197 1..120 100 -> Plus
2R 7813281..7814618 121..1458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:13 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7813078..7813197 1..120 100 -> Plus
2R 7813281..7814618 121..1458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:13:13 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7813078..7813197 1..120 100 -> Plus
2R 7813281..7814618 121..1458 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:29:24 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3700583..3700702 1..120 100 -> Plus
arm_2R 3700786..3702123 121..1458 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:14:25 Download gff for AT25873.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7814480..7815817 121..1458 99   Plus
2R 7814277..7814396 1..120 100 -> Plus

AT25873.pep Sequence

Translation from 186 to 1349

> AT25873.pep
MLRAVEKKILSYVKLPYRGFFVDIGPAVGEADKIWTISMNTESKEVPLVL
LHGLGAGIALWVMNLDAFAKGRPVYAMDILGFGRSSRPLFAKDALVCEKQ
FVKSVEEWRREMNINDMILLGHSMGGFIASSYALSHPERVKHLILADPWG
FPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWALRAAGPFGQWVVQKTRP
DIMRKFQSTIEEDINLLPQYIHQCNAQNPSGESAFHTMMQSFGWAKHPMI
HRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQRGSNMVDIKIVTGAGHH
VYADKPDVFNRYVNETCDMYKVAGGKLITPLQLIRESTESDEEREPSLST
AKTVEVQPEVQPVPQPVTAADTSTPTADELAANIKPK*

AT25873.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13636-PA 463 GF13636-PA 64..463 1..387 1870 89.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23305-PA 454 GG23305-PA 68..454 1..387 2046 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20321-PA 444 GH20321-PA 50..415 1..360 1725 87.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PG 454 CG1882-PG 68..454 1..387 2031 100 Plus
CG1882-PF 454 CG1882-PF 68..454 1..387 2031 100 Plus
CG1882-PE 387 CG1882-PE 1..387 1..387 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 1..387 2031 100 Plus
CG1882-PD 387 CG1882-PD 1..387 1..387 2031 100 Plus
CG1882-PC 387 CG1882-PC 1..387 1..387 2031 100 Plus
CG1882-PA 454 CG1882-PA 68..454 1..387 2031 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19993-PA 476 GI19993-PA 50..437 1..382 1742 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10842-PA 446 GL10842-PA 58..446 1..387 1886 90.7 Plus
Dper\GL25694-PA 343 GL25694-PA 38..338 2..317 662 39.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15096-PA 446 GA15096-PA 58..446 1..387 1886 90.7 Plus
Dpse\GA25396-PA 343 GA25396-PA 38..338 2..317 666 39.9 Plus
Dpse\GA29248-PA 343 GA29248-PA 38..338 2..317 660 39.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20984-PA 454 GM20984-PA 68..454 1..387 2069 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10511-PA 439 GD10511-PA 68..439 1..387 1938 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21242-PA 455 GJ21242-PA 50..415 1..363 1759 89.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22221-PA 460 GK22221-PA 60..460 1..387 1690 80.3 Plus
Dwil\GK14854-PA 358 GK14854-PA 44..341 2..318 625 38.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19151-PA 454 GE19151-PA 68..454 1..387 2048 98.4 Plus

AT25873.hyp Sequence

Translation from 186 to 1349

> AT25873.hyp
MLRAVEKKILSYVKLPYRGFFVDIGPAVGEADKIWTISMNTESKEVPLVL
LHGLGAGIALWVMNLDAFAKGRPVYAMDILGFGRSSRPLFAKDALVCEKQ
FVKSVEEWRREMNINDMILLGHSMGGFIASSYALSHPERVKHLILADPWG
FPEKPSDSTNGKTIPLWVRAIARVLTPLNPLWALRAAGPFGQWVVQKTRP
DIMRKFQSTIEEDINLLPQYIHQCNAQNPSGESAFHTMMQSFGWAKHPMI
HRIKDVRSDIPITFIYGSRSWIDSSSGEKIKSQRGSNMVDIKIVTGAGHH
VYADKPDVFNRYVNETCDMYKVAGGKLITPLQLIRESTESDEEREPSLST
AKTVEVQPEVQPVPQPVTAADTSTPTADELAANIKPK*

AT25873.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1882-PE 387 CG1882-PE 1..387 1..387 2031 100 Plus
CG1882-PB 387 CG1882-PB 1..387 1..387 2031 100 Plus
CG1882-PD 387 CG1882-PD 1..387 1..387 2031 100 Plus
CG1882-PC 387 CG1882-PC 1..387 1..387 2031 100 Plus
CG1882-PG 454 CG1882-PG 68..454 1..387 2031 100 Plus