Clone AT25917 Report

Search the DGRC for AT25917

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:259
Well:17
Vector:pOTB7
Associated Gene/TranscriptCG15330-RA
Protein status:AT25917.pep: gold
Preliminary Size:546
Sequenced Size:657

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15330 2001-12-16 Blastp of sequenced clone
CG15330 2002-01-01 Sim4 clustering to Release 2
CG15330 2003-01-01 Sim4 clustering to Release 3
CG15330 2008-04-29 Release 5.5 accounting
CG15330 2008-08-15 Release 5.9 accounting
CG15330 2008-12-18 5.12 accounting

Clone Sequence Records

AT25917.complete Sequence

657 bp (657 high quality bases) assembled on 2001-12-16

GenBank Submission: AY070821

> AT25917.complete
GGTTAGTAGAAAATATTACAAAAAAAAAATATTGAAATTGGAAAAAAAAT
TCAACAAAATGGACGTTGCAACAACACTTTGGCGCTTGCAGCAGGCGCAT
CAGCGGCAACTTAACGAGTGGGACAGGATTGGTAGACGCCTCAAGCGGCT
GACGGGCAAGAGGTCCAGCGACTTGCTCATCCACGATCCGCTCCTGCAGC
CACCGTTCGTCGCCCATCCTGGCCAACGGATGAGCGGTGGTGGTCAGCAG
ACGCCGATGCCGTTGCCAATGGCCAGGAAGCAGACAACGCAGATCAGACG
CAATCATCCGAATAAATCGGTTAAATTCAAAGCATCCAATAATAACACCT
TGGATCTACTTGTCGTGGGTCAACAGCTGCAAATGCATCGTCCACCTGGA
CGACGGCATGTGCAGCTCCACAGTCCCATGTCCTCTCAGCCCCGCCAGCA
TATCGAAGAGTATGTCTATTTCTATCCGGTCCACTACCATGAGACGGACC
ACTGGCCACCACACGGCCAGCCGGAACCAAATCTTGTGGTGGATGCACGA
TTTGTGGCCGAGCTACTGGATGAGCTGCTGCTGCCTGCAGGCAATCGTAT
TTGATTTGTGCTTCGTTCAAATAAAAAAGAAACATTGCGAAAAAAAAAAA
AAAAAAA

AT25917.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-RA 639 CG15330-RA 1..639 1..639 3195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7847960..7848598 1..639 3195 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:59:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7956064..7956709 1..646 3230 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7964162..7964807 1..646 3230 100 Plus
Blast to na_te.dros performed on 2019-03-16 01:06:34 has no hits.

AT25917.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:07:28 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7847960..7848598 1..639 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:22:00 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..546 59..604 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:01:45 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..546 59..604 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:05 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..546 59..604 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:17 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..546 59..604 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:23:14 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..546 59..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:13 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..639 1..639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:01:45 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..639 1..639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:05 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..639 1..639 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:18 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..639 1..639 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:23:14 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
CG15330-RA 1..639 1..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:28 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
X 7956064..7956702 1..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:28 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
X 7956064..7956702 1..639 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:07:28 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
X 7956064..7956702 1..639 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:05 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7850097..7850735 1..639 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:00 Download gff for AT25917.complete
Subject Subject Range Query Range Percent Splice Strand
X 7964162..7964800 1..639 100   Plus

AT25917.hyp Sequence

Translation from 1 to 603

> AT25917.hyp
VSRKYYKKKILKLEKKFNKMDVATTLWRLQQAHQRQLNEWDRIGRRLKRL
TGKRSSDLLIHDPLLQPPFVAHPGQRMSGGGQQTPMPLPMARKQTTQIRR
NHPNKSVKFKASNNNTLDLLVVGQQLQMHRPPGRRHVQLHSPMSSQPRQH
IEEYVYFYPVHYHETDHWPPHGQPEPNLVVDARFVAELLDELLLPAGNRI
*

AT25917.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-PA 181 CG15330-PA 1..181 20..200 980 100 Plus

AT25917.pep Sequence

Translation from 58 to 603

> AT25917.pep
MDVATTLWRLQQAHQRQLNEWDRIGRRLKRLTGKRSSDLLIHDPLLQPPF
VAHPGQRMSGGGQQTPMPLPMARKQTTQIRRNHPNKSVKFKASNNNTLDL
LVVGQQLQMHRPPGRRHVQLHSPMSSQPRQHIEEYVYFYPVHYHETDHWP
PHGQPEPNLVVDARFVAELLDELLLPAGNRI*

AT25917.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21294-PA 207 GF21294-PA 4..200 9..175 252 36.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19675-PA 188 GG19675-PA 1..188 1..181 654 74.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15330-PA 181 CG15330-PA 1..181 1..181 980 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11989-PA 176 GM11989-PA 1..176 1..181 782 85.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16873-PA 176 GD16873-PA 1..176 1..181 780 85.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15752-PA 172 GE15752-PA 1..172 1..181 638 73.6 Plus