Clone AT26185 Report

Search the DGRC for AT26185

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:261
Well:85
Vector:pOTB7
Associated Gene/TranscriptArl4-RA
Protein status:AT26185.pep: gold
Preliminary Size:507
Sequenced Size:1029

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2219 2002-01-01 Sim4 clustering to Release 2
CG2219 2002-04-21 Blastp of sequenced clone
CG2219 2003-01-01 Sim4 clustering to Release 3
CG2219 2008-04-29 Release 5.5 accounting
CG2219 2008-08-15 Release 5.9 accounting
CG2219 2008-12-18 5.12 accounting

Clone Sequence Records

AT26185.complete Sequence

1029 bp (1029 high quality bases) assembled on 2002-04-21

GenBank Submission: AY113302

> AT26185.complete
AAAATCGACAATATTTCATTGAAGAATGGGTGCTACAATGGTAAAACCGT
TGGTAAAAAATGGAAATATTTTGGATGCACTGCCATCACAGGCAACTCTA
CATGTAGTTATGTTAGGTTTGGATTCTGCGGGAAAAACAACGGCTTTATA
CAGACTTAAGTTTGATCAATACTTAAACACAGTGCCAACTATTGGATTTA
ATTGTGAAAAGGTACAATGTACCCTTGGCAAAGCAAAAGGAGTTCATTTT
TTGGTTTGGGATGTCGGAGGACAAGAAAAATTGAGACCACTTTGGAGAAG
TTATACACGTTGCACTGATGGCATTTTGTTTGTTATTGATTCTGTTGATA
CAGAAAGAATGGAAGAAGCTAAGATGGAATTAATGCGTACCGCTAAATGT
CCTGATAACCAGGGTGTTCCCGTTCTGATACTAGCAAATAAACAGGATCT
GCCCAACGCTTGTGGTGCAATGGAACTGGAAAAACTTTTAGGACTGAACG
AACTTTACAACCCGGTGCCTAATATATCAATGCCCTCTAGTTCCGACTCT
TCTCCCACAATTAATTTAATTGGCTGTAGAGTTTCAAACCAAAGTATTAC
AGATAAATCTTTAGAAGAGAAAAAAGAGAGTCATCTGCATTCGTCTATGA
TTCACATAAAACCTGCACTTGAAAGTAAAGACCACAATTCCACGTTAAGC
GGAGGAGCCTTGACAGCTTTTATATATCCGCAATCTCACAACAATTCTGC
TGTACTGGATCAAAAAAACCCACAAGATGTTAAAAATGGTTTTCATAACA
AAAAGATGAACAGGTCTTCATCAAATTCTGTGCAATTTAGGGGGTGGTAT
ATACAGCCAACCTGTGCTATAACTGGTGAGGGTCTCCAAGAAGGTTTGGA
CGCTCTGTATGATATGATTTTAAAACGCCGAAAAATTAATAAGTCAAATA
AAAGAAATCTGTAGCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

AT26185.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG2219-RA 1178 CG2219-RA 122..1091 1..970 4850 100 Plus
CG2219.b 1015 CG2219.b 40..1012 1..970 4795 99.6 Plus
CG2219.a 1099 CG2219.a 157..1021 106..970 4325 100 Plus
CG2219.a 1099 CG2219.a 68..158 1..91 455 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 198071..198627 967..411 2785 100 Minus
chr4 1351717 chr4 199722..199846 214..90 625 100 Minus
chr4 1351717 chr4 199410..199514 413..309 525 100 Minus
chr4 1351717 chr4 199570..199669 309..210 500 100 Minus
chr4 1351717 chr4 199896..199987 92..1 460 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:59:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 177435..177994 970..411 2800 100 Minus
4 1348131 4 179089..179213 214..90 625 100 Minus
4 1348131 4 178777..178881 413..309 525 100 Minus
4 1348131 4 178937..179036 309..210 500 100 Minus
4 1348131 4 179263..179354 92..1 460 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 177435..177994 970..411 2800 100 Minus
4 1331231 4 179089..179213 214..90 625 100 Minus
4 1331231 4 178777..178881 413..309 525 100 Minus
4 1331231 4 178937..179036 309..210 500 100 Minus
4 1331231 4 179263..179354 92..1 460 100 Minus
Blast to na_te.dros performed 2019-03-15 15:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2104..2250 810..670 118 56.8 Minus

AT26185.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:23:15 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 198071..198625 413..967 100 <- Minus
chr4 199411..199513 310..412 100 <- Minus
chr4 199570..199667 212..309 100 <- Minus
chr4 199725..199844 92..211 100 <- Minus
chr4 199897..199987 1..91 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:22:24 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..939 26..964 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:51 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..939 26..964 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:26:21 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..939 26..964 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:15 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..939 26..964 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:04:16 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 1..939 26..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:03 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..967 1..967 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:51 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..967 1..967 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:21 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 36..1002 1..967 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:15 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
CG2219-RA 1..967 1..967 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:04:16 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
Arl4-RA 36..1002 1..967 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:15 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
4 179264..179354 1..91 100   Minus
4 177438..177992 413..967 100 <- Minus
4 178778..178880 310..412 100 <- Minus
4 178937..179034 212..309 100 <- Minus
4 179092..179211 92..211 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:15 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
4 179264..179354 1..91 100   Minus
4 177438..177992 413..967 100 <- Minus
4 178778..178880 310..412 100 <- Minus
4 178937..179034 212..309 100 <- Minus
4 179092..179211 92..211 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:15 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
4 179264..179354 1..91 100   Minus
4 177438..177992 413..967 100 <- Minus
4 178778..178880 310..412 100 <- Minus
4 178937..179034 212..309 100 <- Minus
4 179092..179211 92..211 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:21 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 199890..199980 1..91 100   Minus
arm_4 198064..198618 413..967 100 <- Minus
arm_4 199404..199506 310..412 100 <- Minus
arm_4 199563..199660 212..309 100 <- Minus
arm_4 199718..199837 92..211 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:23 Download gff for AT26185.complete
Subject Subject Range Query Range Percent Splice Strand
4 179092..179211 92..211 100 <- Minus
4 179264..179354 1..91 100   Minus
4 177438..177992 413..967 100 <- Minus
4 178778..178880 310..412 100 <- Minus
4 178937..179034 212..309 100 <- Minus

AT26185.pep Sequence

Translation from 25 to 963

> AT26185.pep
MGATMVKPLVKNGNILDALPSQATLHVVMLGLDSAGKTTALYRLKFDQYL
NTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPLWRSYTRCTDGI
LFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAME
LEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKK
ESHLHSSMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQ
DVKNGFHNKKMNRSSSNSVQFRGWYIQPTCAITGEGLQEGLDALYDMILK
RRKINKSNKRNL*

AT26185.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13910-PA 178 GF13910-PA 1..129 1..129 672 93.8 Plus
Dana\GF20141-PA 178 GF20141-PA 1..176 130..310 472 56.6 Plus
Dana\GF23441-PA 182 GF23441-PA 6..150 13..162 377 48.7 Plus
Dana\GF13030-PA 175 GF13030-PA 2..144 13..160 356 46.6 Plus
Dana\GF23416-PA 180 GF23416-PA 7..150 14..162 353 47 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16460-PA 305 GG16460-PA 1..305 1..312 1523 92 Plus
Dere\GG13164-PA 182 GG13164-PA 6..150 13..162 377 48.7 Plus
Dere\GG16407-PA 180 GG16407-PA 7..150 14..162 354 47.7 Plus
Dere\GG20511-PA 175 GG20511-PA 2..144 13..160 353 45.9 Plus
Dere\GG15940-PA 190 GG15940-PA 27..170 25..173 302 40.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23983-PA 292 GH23983-PA 1..290 1..311 973 65.4 Plus
Dgri\GH14762-PA 182 GH14762-PA 6..150 13..162 377 48.7 Plus
Dgri\GH14763-PA 182 GH14763-PA 7..161 14..173 360 43.8 Plus
Dgri\GH23951-PA 180 GH23951-PA 7..150 14..162 353 47 Plus
Dgri\GH20425-PA 175 GH20425-PA 2..144 13..160 344 45.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-PA 312 CG2219-PA 1..312 1..312 1629 100 Plus
Arl4-PB 313 CG2219-PB 1..313 1..312 1617 99.7 Plus
Arl4-PC 100 CG2219-PC 1..95 1..95 502 100 Plus
Arf79F-PJ 182 CG8385-PJ 7..150 14..162 362 49 Plus
Arf79F-PI 182 CG8385-PI 7..150 14..162 362 49 Plus
Arf79F-PH 182 CG8385-PH 7..150 14..162 362 49 Plus
Arf79F-PF 182 CG8385-PF 7..150 14..162 362 49 Plus
Arf79F-PC 182 CG8385-PC 7..150 14..162 362 49 Plus
Arf79F-PE 182 CG8385-PE 7..150 14..162 362 49 Plus
Arf79F-PB 182 CG8385-PB 7..150 14..162 362 49 Plus
Arf79F-PA 182 CG8385-PA 7..150 14..162 362 49 Plus
Arf102F-PB 180 CG11027-PB 7..150 14..162 346 47 Plus
Arf102F-PA 180 CG11027-PA 7..150 14..162 346 47 Plus
Arf51F-PE 175 CG8156-PE 2..144 13..160 342 45.9 Plus
Arf51F-PA 175 CG8156-PA 2..144 13..160 342 45.9 Plus
Arf51F-PC 175 CG8156-PC 2..144 13..160 342 45.9 Plus
Arf51F-PB 175 CG8156-PB 2..144 13..160 342 45.9 Plus
Arf51F-PD 175 CG8156-PD 2..144 13..160 342 45.9 Plus
Arl1-PA 180 CG6025-PA 17..149 25..162 291 42.8 Plus
Arl5-PA 179 CG7197-PA 19..147 27..160 270 41.8 Plus
dnd-PA 179 CG6560-PA 20..148 27..160 263 42.5 Plus
Arl2-PA 184 CG7435-PA 17..147 25..160 252 38.2 Plus
Arfrp1-PA 200 CG7039-PA 20..148 27..152 241 43.9 Plus
Arl8-PC 186 CG7891-PC 21..152 25..160 220 33.6 Plus
Arl8-PB 186 CG7891-PB 21..152 25..160 220 33.6 Plus
Arl8-PA 186 CG7891-PA 21..152 25..160 220 33.6 Plus
Sar1-PE 193 CG7073-PE 23..151 27..160 209 38.1 Plus
Sar1-PC 193 CG7073-PC 23..151 27..160 209 38.1 Plus
Sar1-PD 193 CG7073-PD 23..151 27..160 209 38.1 Plus
Sar1-PA 193 CG7073-PA 23..151 27..160 209 38.1 Plus
Arl6-PA 202 CG7735-PA 20..154 27..160 155 30.4 Plus
Arl6-PB 201 CG7735-PB 20..153 27..160 154 30.4 Plus
CG17819-PA 186 CG17819-PA 23..183 27..188 152 27 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14111-PA 293 GI14111-PA 1..291 1..311 966 65.3 Plus
Dmoj\GI11864-PA 182 GI11864-PA 6..150 13..162 377 48.7 Plus
Dmoj\GI14031-PA 180 GI14031-PA 7..150 14..162 353 47 Plus
Dmoj\GI19608-PA 175 GI19608-PA 2..144 13..160 345 45.3 Plus
Dmoj\GI15002-PA 196 GI15002-PA 9..151 15..162 324 42.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18160-PA 312 GL18160-PA 1..310 1..310 1173 75.1 Plus
Dper\GL25178-PA 182 GL25178-PA 6..150 13..162 377 48.7 Plus
Dper\GL17751-PA 175 GL17751-PA 2..144 13..160 355 45.9 Plus
Dper\GL18404-PA 180 GL18404-PA 7..150 14..162 352 47 Plus
Dper\GL24385-PA 181 GL24385-PA 6..149 13..162 338 47 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15309-PA 312 GA15309-PA 1..310 1..310 1163 74.4 Plus
Dpse\GA21036-PA 182 GA21036-PA 6..150 13..162 377 48.7 Plus
Dpse\GA20856-PA 175 GA20856-PA 2..144 13..160 355 45.9 Plus
Dpse\GA10714-PA 180 GA10714-PA 7..150 14..162 352 47 Plus
Dpse\GA23613-PA 181 GA23613-PA 6..149 13..162 338 47 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23230-PA 307 GM23230-PA 1..307 1..312 1599 96.8 Plus
Dsec\GM22073-PA 182 GM22073-PA 6..150 13..162 377 48.7 Plus
Dsec\GM21603-PA 175 GM21603-PA 2..144 13..160 353 45.9 Plus
Dsec\GM13026-PA 180 GM13026-PA 7..150 14..162 352 47 Plus
Dsec\GM25571-PA 180 GM25571-PA 17..160 25..173 305 40.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24390-PA 137 GD24390-PA 1..129 1..129 702 100 Plus
Dsim\GD12049-PA 182 GD12049-PA 6..150 13..162 377 48.7 Plus
Dsim\GD11108-PA 175 GD11108-PA 2..144 13..160 353 45.9 Plus
Dsim\GD20493-PA 180 GD20493-PA 7..150 14..162 352 47 Plus
Dsim\GD14586-PA 180 GD14586-PA 17..160 25..173 305 40.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21658-PA 307 GJ21658-PA 1..305 1..311 969 63.9 Plus
Dvir\GJ13559-PA 182 GJ13559-PA 6..150 13..162 377 48.7 Plus
Dvir\GJ19602-PA 180 GJ19602-PA 7..150 14..162 353 47 Plus
Dvir\GJ14973-PA 175 GJ14973-PA 2..144 13..160 345 45.3 Plus
Dvir\GJ15360-PA 193 GJ15360-PA 8..148 15..160 309 41.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13675-PA 309 GK13675-PA 1..307 1..310 980 65.5 Plus
Dwil\GK20496-PA 182 GK20496-PA 6..150 13..162 377 48.7 Plus
Dwil\GK13623-PA 180 GK13623-PA 7..150 14..162 353 47 Plus
Dwil\GK20891-PA 175 GK20891-PA 2..144 13..160 352 45.9 Plus
Dwil\GK24495-PA 167 GK24495-PA 4..147 25..173 306 40.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14526-PA 312 GE14526-PA 1..310 1..310 1420 91.9 Plus
Dyak\GE19486-PA 182 GE19486-PA 6..150 13..162 377 48.7 Plus
Dyak\GE13644-PA 175 GE13644-PA 2..144 13..160 353 45.9 Plus
Dyak\Arf102F-PA 180 GE14567-PA 7..150 14..162 352 47.7 Plus
Dyak\GE22880-PA 180 GE22880-PA 17..160 25..173 305 40.9 Plus

AT26185.hyp Sequence

Translation from 25 to 963

> AT26185.hyp
MGATMVKPLVKNGNILDALPSQATLHVVMLGLDSAGKTTALYRLKFDQYL
NTVPTIGFNCEKVQCTLGKAKGVHFLVWDVGGQEKLRPLWRSYTRCTDGI
LFVIDSVDTERMEEAKMELMRTAKCPDNQGVPVLILANKQDLPNACGAME
LEKLLGLNELYNPVPNISMPSSSDSSPTINLIGCRVSNQSITDKSLEEKK
ESHLHSSMIHIKPALESKDHNSTLSGGALTAFIYPQSHNNSAVLDQKNPQ
DVKNGFHNKKMNRSSSNSVQFRGWYIQPTCAITGEGLQEGLDALYDMILK
RRKINKSNKRNL*

AT26185.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Arl4-PA 312 CG2219-PA 1..312 1..312 1629 100 Plus
Arl4-PB 313 CG2219-PB 1..313 1..312 1617 99.7 Plus
Arl4-PC 100 CG2219-PC 1..95 1..95 502 100 Plus
Arf79F-PJ 182 CG8385-PJ 7..150 14..162 362 49 Plus
Arf79F-PI 182 CG8385-PI 7..150 14..162 362 49 Plus