Clone AT26438 Report

Search the DGRC for AT26438

Clone and Library Details

Library:AT
Tissue Source:Drosophila melanogaster adult testes
Created by:Ling Hong
Date Registered:2000-06-08
Comments:Oligo dT-primed and directionally cloned at EcoRI and XhoI in pOTB7
Original Plate Number:264
Well:38
Vector:pOTB7
Associated Gene/TranscriptCG14000-RA
Protein status:AT26438.pep: gold
Preliminary Size:1140
Sequenced Size:1377

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14000 2002-01-01 Sim4 clustering to Release 2
CG14000 2002-03-28 Blastp of sequenced clone
CG14000 2003-01-01 Sim4 clustering to Release 3
CG14000 2008-04-29 Release 5.5 accounting
CG14000 2008-08-15 Release 5.9 accounting
CG14000 2008-12-18 5.12 accounting

Clone Sequence Records

AT26438.complete Sequence

1377 bp (1377 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094663

> AT26438.complete
CCAAAACTAAATCTAAACCATTTTAAACTAGAATACGTCTGTGAAATGAA
CCAGGTTTGGGTGTTTTTTAAACTCATCGAGGTGTTGCTGGGCAGTGTTT
GTATGTTTTTCCACATACGCGGCTCATCCTACTGGCCAGAGCGTACTCCT
CATGTGATCCTATATTGTGCCACATTTTCGTCCTTTACGGCGCTCGCCGC
TCTAGGCGCGTTCCGACTGCTATTGGCTAGGAGTACGGTGCTCTCCTCCC
AGCTCCTGCTCACACTGAGTGCCGTGCTGTCGCACTATTTCTGCGGCGTG
CTGATAATGCGCACCGCCATGCTGGACCCTCACCTGGCCTTCATCAATTC
TACCATCGAGTATCTGGAACATCCGCACTTTGCGCACTGCAAGCAGCAGA
GCATCGCTGCGCTGGTTACTGGCACCATGTACCTGATGCACATGTTCCAC
GTGTTCGACCTGCTGATGCGCATGGAACCCGGCGACTGGAAACGTCAGGC
GACTGGCCGTAAGTACTTTGAGGGAACAGAGTCTGGTTCAACCGGGCTAT
TTGTGCTTTCCAAGCCAGTGGACGACTTTCTATGCAAATGCTGCAGGTGC
TACTATAAGTTGGCCAATTCTCAGATCCTGTACTTCCGGCCGAACGCGGA
GGTGGAGCAGCCGCACTTTATAGTCCGCATGTGGCAGTTCATTGGGGATG
CGCGTAAAAAGTTCTTTTCGCTGCATCAGATCGAGAGTGACGAGAGTTTT
CTATCAACGCCAACAATAACCACCAGTGAATCGGATATCACACCGGTGGA
CACGGAGTACAGTGTGTACATGGAAGAGCAGGCCAATAAGATGCGCAGGT
CTGCTTCAGCCTGGCGCGGCTCCAGCGATTCCTCGAGCTTGTGGGCCAAA
ATCGAGGACAGGAGCACTGTTAGCCTTGTTTCAACTCGGTCAAGTGAGAA
CAGCGAGGCCACAATGAAACCCATTCAAATGGATCGGAAGCTAGCCCGGC
GATCTTCCATGTGGGCGGACACTGAGAAAAGGGAGAAATCGGAGATTTTG
CTGGTAGAACAGGGCTCTAGCTATTCTCGGCTCAGAACTTTAAGCAATGC
TGAATTGGTCCATAAGCCAAGCGATGCGGGAGAAAAGGAACAACAAGTTC
CAGATGCAGCCAACCCAAATATTACAAATGAAGAAGCTACGAACTCACAC
ATCGAATTCTCTTTGAAGCCTGGAACTGAGAAAACTTCGTGAATTTGATG
ACGACTTTCCCTAACGAAAATTGTAGCTATTGAAATTTTTTGTTTTGATT
ACGTCGATGTATTTTTACCATAAGATACTATAGCAGTTTATAAATGAAAC
ATACCTGTATGAGAAAAAAAAAAAAAA

AT26438.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14000-RA 1384 CG14000-RA 1..1364 1..1364 6820 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5907978..5909340 1363..1 6815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 15:59:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5908926..5910289 1364..1 6820 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5908926..5910289 1364..1 6820 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:52:14 has no hits.

AT26438.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:53:08 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5907978..5909340 1..1363 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 15:22:56 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1197 46..1242 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:24:04 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1197 46..1242 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:52:59 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1197 46..1242 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:00:08 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1197 46..1242 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:16:15 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1197 46..1242 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:51 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:24:04 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:52:59 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:00:09 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1363 1..1363 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:16:15 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
CG14000-RA 1..1363 1..1363 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:08 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5908927..5910289 1..1363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:08 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5908927..5910289 1..1363 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:53:08 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5908927..5910289 1..1363 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:52:59 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5908927..5910289 1..1363 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:33:05 Download gff for AT26438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5908927..5910289 1..1363 100   Minus

AT26438.hyp Sequence

Translation from 1 to 1241

> AT26438.hyp
PKLNLNHFKLEYVCEMNQVWVFFKLIEVLLGSVCMFFHIRGSSYWPERTP
HVILYCATFSSFTALAALGAFRLLLARSTVLSSQLLLTLSAVLSHYFCGV
LIMRTAMLDPHLAFINSTIEYLEHPHFAHCKQQSIAALVTGTMYLMHMFH
VFDLLMRMEPGDWKRQATGRKYFEGTESGSTGLFVLSKPVDDFLCKCCRC
YYKLANSQILYFRPNAEVEQPHFIVRMWQFIGDARKKFFSLHQIESDESF
LSTPTITTSESDITPVDTEYSVYMEEQANKMRRSASAWRGSSDSSSLWAK
IEDRSTVSLVSTRSSENSEATMKPIQMDRKLARRSSMWADTEKREKSEIL
LVEQGSSYSRLRTLSNAELVHKPSDAGEKEQQVPDAANPNITNEEATNSH
IEFSLKPGTEKTS*

AT26438.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 06:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG14000-PA 398 CG14000-PA 1..398 16..413 2067 100 Plus

AT26438.pep Sequence

Translation from 45 to 1241

> AT26438.pep
MNQVWVFFKLIEVLLGSVCMFFHIRGSSYWPERTPHVILYCATFSSFTAL
AALGAFRLLLARSTVLSSQLLLTLSAVLSHYFCGVLIMRTAMLDPHLAFI
NSTIEYLEHPHFAHCKQQSIAALVTGTMYLMHMFHVFDLLMRMEPGDWKR
QATGRKYFEGTESGSTGLFVLSKPVDDFLCKCCRCYYKLANSQILYFRPN
AEVEQPHFIVRMWQFIGDARKKFFSLHQIESDESFLSTPTITTSESDITP
VDTEYSVYMEEQANKMRRSASAWRGSSDSSSLWAKIEDRSTVSLVSTRSS
ENSEATMKPIQMDRKLARRSSMWADTEKREKSEILLVEQGSSYSRLRTLS
NAELVHKPSDAGEKEQQVPDAANPNITNEEATNSHIEFSLKPGTEKTS*

AT26438.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15443-PA 417 GF15443-PA 1..358 1..347 883 52.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24274-PA 397 GG24274-PA 1..396 1..396 1769 85.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16269-PA 275 GH16269-PA 1..224 1..210 316 32 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14000-PA 398 CG14000-PA 1..398 1..398 2067 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13205-PA 232 GI13205-PA 1..213 1..201 247 30 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19107-PA 378 GL19107-PA 1..294 1..291 873 61.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12689-PA 461 GA12689-PA 1..305 1..303 847 59.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17988-PA 376 GM17988-PA 1..373 1..374 1851 94.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11981-PA 287 GJ11981-PA 1..218 1..202 287 29.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18971-PA 397 GE18971-PA 1..397 1..397 1795 86.4 Plus